Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092732,221,7290AT32.1% 79.6 / 12.7 54pseudogene (509/1436 nt)mdtQmultidrug resistance outer membrane protein MdtQ
Reads supporting (aligned to +/- strand):  ref base A (11/25);  new base T (17/0);  total (29/25)
Fisher's exact test for biased strand distribution p-value = 6.98e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.54e-01
Rejected as consensus: Frequency below/above cutoff threshold.

CCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATG  >  NZ_CP009273/2221483‑2221978
                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                   
ccccGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTTCTCGCGGTTCCCCGCCCCTGCTTTTAcc                                                                                                                                                                                                                                                                 >  1:1062494/1‑250 (MQ=255)
ccccGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTGGTCCCTGTTCGCCCCCCCTGCCTTTAcc                                                                                                                                                                                                                                                                 >  1:1038494/1‑250 (MQ=255)
ccccGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCGCGTTCCGCCGCCCGTGCTTTTAcc                                                                                                                                                                                                                                                                 >  1:595173/1‑250 (MQ=255)
 cccGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAAcc                                                                                                                                                                                                                                                                 <  2:792948/249‑1 (MQ=255)
       aCATCGTTGAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCa                                                                                                                                                                                                                                                         <  2:1098497/250‑1 (MQ=255)
            gTTGAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCCGCAATTGGCGGGGTTTTTCCGCTTTCCCCCCCCCGGGTTTAACCGCACCCaagggg                                                                                                                                                                                                                                                    >  1:57927/1‑245 (MQ=255)
            gTTGAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCgg                                                                                                                                                                                                                                                    <  1:619068/250‑1 (MQ=255)
            gTTGAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTTCCCCCGTTTCCCCCCCCCGGCTTTTACCCTAACCcggcgg                                                                                                                                                                                                                                                    >  1:26890/1‑250 (MQ=255)
              tGAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCCACCCTGCCACCCAGCAATTGGCGGGTTTGATTCCGGTCCTCCGCCCCTGGTTTTACCACACTCAGGCgggg                                                                                                                                                                                                                                                  >  2:689012/1‑249 (MQ=255)
               gAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCGCGGTTCCCCCCCCCCGCGTTTACCGGACCCCCGCGGGcg                                                                                                                                                                                                                                                 >  2:924321/1‑249 (MQ=255)
               caGCTACTGCCGGCTTTTGACGGCATTAATATCGGCTTCCACAGCTTCAACTGAAGAATTAATCCCGTTCTGATATAACTGCGGATCGTTCAAGATAATGGTGTTCTGCGCTTTTTCGATGTGCTGCAAGACCGTGTTTAGCGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGGTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGc                                                                                                                                                                                                                                                  <  2:1531336/248‑1 (MQ=255)
                  ctgctgCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTa                                                                                                                                                                                                                                              <  1:590209/250‑1 (MQ=255)
                     ctgcCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGGTCGCGGTCCCCCGCCCCGGCTTTTAACGTACCCAGGCggggcggaacc                                                                                                                                                                                                                                           >  1:1281921/1‑242 (MQ=255)
                     ctgcCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAAcc                                                                                                                                                                                                                                           <  1:238786/250‑1 (MQ=255)
                     ctgcCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAAcc                                                                                                                                                                                                                                           <  1:921872/250‑1 (MQ=255)
                                  cTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACCCTTCCAACCAGCAATTGGCGGGGTTGGCCCCGTTCCGCCGCCCGCGCTTTCACCGTACCCAACCCGGCAGCAAACTccccccccttcc                                                                                                                                                                                                                             >  1:159378/1‑244 (MQ=255)
                                   tGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTGCTCGCGTTCCGCCGCCCCGGCTTTTAACCTAACCCGGCGGGCGGTAACCTCCCCCCGGTTCtt                                                                                                                                                                                                                           >  1:597713/1‑250 (MQ=255)
                                    ggCATAAAAATCGGCTTCCACTCCGTCAACGAAAGAAGTAATCCCGTTGTGAGATTGCTGGCGATCGGTCGCGATAAGGGTGTTCGGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTGGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTGCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCtt                                                                                                                                                                                                                           <  2:887030/249‑1 (MQ=255)
                                     gCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCttt                                                                                                                                                                                                                          <  2:225947/249‑1 (MQ=255)
                                     gCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTc                                                                                                                                                                                                                         <  2:766030/250‑1 (MQ=255)
                                            tatCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTTGTCCGGGTTCGCCCCCCCCGCCTTTACCCTGCCCAGGGGGGGCGTAACCCCCGCCCCGCTTTTTTcccccat                                                                                                                                                                                                                   >  2:1407198/1‑247 (MQ=255)
                                              tCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTTCCCGCCAGCAATTGGCGGGGTTTCTCGCGCTCCGCCCCCCGCGCTCTTACCCTACCCCCGCGGGCAGCATACCCCCCCCCCCTCTTTCCCCCCatat                                                                                                                                                                                                                >  2:1269976/1‑250 (MQ=255)
                                                   ttCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTTGTCGCGGTCCGCCGCCCCGGCTTTTACCCTAACCCGGCGGGCCGGAACCCCCCCCCGATTCTTTCCCCCGATATc                                                                                                                                                                                                               >  1:289262/1‑246 (MQ=255)
                                                        cacCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTATTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCa                                                                                                                                                                                                     <  1:950089/250‑1 (MQ=255)
                                                              cAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGccc                                                                                                                                                                                                <  2:574965/248‑1 (MQ=255)
                                                              cAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTTCTCGCGGTCCGCCCCCCCTGCTTTTACCCGACCCAGGCGGGCCGTAAACCCCCCCCGCTTCTTTCCCCCGATATCGGGATGCccgcccgc                                                                                                                                                                                              >  1:9675/1‑250 (MQ=255)
                                                              cAACTGAAGAAGTAATCCCGTTCTGATATAGCGGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGccc                                                                                                                                                                                                <  2:153170/248‑1 (MQ=255)
                                                                                    cTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTGGTCGCGGTCCGCCCCCCCTGCTTTTACCCTACCCCGGCGGGCCGTAAACCCCGCCCGGTTTTTTTCCCCGATATCGGGATTGCCGCCCGCCGTTAAGCCCAAAATAACCTTg                                                                                                                                                                      >  1:642812/1‑250 (MQ=255)
                                                                                                gCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTTCTCGCGTTCCGCCGCCCGGGCTTTAACCGTACCCAGGCGGGCCGTAAACTCCGCCCGATTCTTTTCCCCGATATCGAGATGCCCACCCGCCCGTAAGCCAAAAGCACCGTTGGGGTACCACagg                                                                                                                                                          >  1:438950/1‑250 (MQ=255)
                                                                                                   gtcggtcggTATAATGGTGTTCGTCTTTTTTTCTATTGGCTGCAAGACCGTTTTAACCGCCGCGGGGTTTTGCCCCCCCCAGACCGGGCGGGCCACGCTCCCGGCCAGCATTGGGGGGTTTTGCCCGCGTCCCGCCCCCCGTCCTTAACCCGTCCCAGGGGGGGCGGAACCCCCCGCCCGATTTTTCCCCCAGAAATCGAGAGGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCg                                                                                                                                                       <  2:601068/249‑1 (MQ=255)
                                                                                                      ggTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTGGTCGCGGTCCGCCCCCCCCGGTTTTACCGTAACCCAGCGGGCCGCAAACTCCCCCCCGTTCTTTCCCCCGCTATACAGAAGCCCGACCCCCACTTAACCCAAAAAAACCTGTGGGGACCACGGGCCgggc                                                                                                                                                    >  2:1209340/1‑248 (MQ=255)
                                                                                                        tgccgttAATGTTGTTCTGCTCTTTTCCTTTTGGTGGAAAACCGTGGTTAACCGCCGCTGGGTTGGACCCCCCCGAAGAGGGCGGGTCTAGGCGGCCGGCCGGCAGTGGGGGGGTTTGCCCGCGTCCCGCCGCCCGTGCTTAACCCTTACCCAGGCGGGGAATACCCCCCGCCCGATTCTTCCCCCAAAAATCGGGATGCCACCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGt                                                                                                                                                 <  2:562387/244‑1 (MQ=255)
                                                                                                                       tCTGCTTTTTTTCTTTTGCCGACAACCCGGTTGTTACCGCCCCTGGGTTGTCCCTCCCCCAGTACGGGCGGTCTCCGCTGCCACCCCGAAATTGGCGGGTTTGCCCGCTTCCCGCCGCCCGTTTTTTACCCGTACCCGGGCGGGCAGTACCCTCCCCCCGTTTCTTCCCCCATATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGAt                                                                                                                                   <  2:1497607/249‑1 (MQ=255)
                                                                                                                                              ccaacacggttttAACCCCCCCTGGGGTTGCCCCCCCCCAGTACGGGGGGTCTCCGCCCCCGGCCAGAATTGGGCGGTTTTGCCCGCCTCCCGCCCCCCGTTTTTTACCCGTCCCCGGGCGGGCAGTACCCTCCCCCCGATTCTTCCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCAt                                                                                                            <  2:22885/240‑1 (MQ=255)
                                                                                                                                              cAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTTCGCGCGTTCCCCCCCCCCCGCGTTTACCGCACCCCAGCGGGCCGTAACCCCCCCCCCAGTTTTTTCCCCAATAACGAGATGCCCACCCCCCCGTAAGCCAAAAGTATCGCTCGGTGACCCCGGGCCGGGCGGTCCTTGCGGCGGGTCCGTTCGTGCAGAACGCCCCCAt                                                                                                            >  2:685144/1‑250 (MQ=255)
                                                                                                                                                  acctgttttcagcgccgcCTGGGTTGCCCACCCCCAGTACGGGCGGCTTCCGCTGCCCGCCAGAAATGGGGGGGTTTCCTCCCGTCCCCCCCCCCGTGCTTTAACCGCACCCAGGCGGGCAGAACCCCCCGCCCGATTCTTCCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAg                                                                                                        <  2:759048/238‑1 (MQ=255)
                                                                                                                                                   ccGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCCACGCCGCCAGCCAGCAAATGGCGGGGTTTCTTTCGGTCCCCCCCCCCCGCTTTAACCCCACCCCAGCGGGGCGGAACCCCCCCCCCCATTTTTTCCCCAGGAATGCGATGACAACCCCCCGCTTAACCCAAAAAATCCCTGGGGTACCCCGGGCCGGTCCCACCCTCTTCCCGCGCGTTCCGAGCAACCGGCCCCACTAAgac                                                                                                      >  2:960047/1‑248 (MQ=255)
                                                                                                                                                                        ggttgcgcccccccccGTCCAGGGGGGCTCCGCGCCCCGCCGGCATTGGGCGGGTTTCCTCGCGTCCCGCCCCCGTTGCTTTACCCCCCCCGGGGCGGGAAGTCCCCCCCCCCCTGTTCTTTCCCCAGATATGGAGGGGCCGGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACAtttttt                                                                                     <  2:1507852/237‑1 (MQ=255)
                                                                                                                                                                               ccACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTTCTCGCGGTTCGCCGCCCGGGGTTTTAACGTAACCCGGGGGGGAGGAACCTCCCCCCCGATCTTTCCCCCGATAACGGGATGGCCAGCCCCCGGTTAGCCAAAAAGAACGGTGGGGGTCCACCGGGCGGGGCGAACCCGCGCCGGGGCGGTTAGAGGACAACGGGCCCCTAAACCTTCCTGCGGCCAtttttgtcgcccc                                                                              >  2:499426/1‑242 (MQ=255)
                                                                                                                                                                                                  ggCTACGCTGCCAGCCAGCAATTGGCGGGTTTTCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCCCCGCCCGCTTCTTTCCCCCGATATCGAGATGCCAGACCGCCCTTAAGCCCAAAATACCGTTGGTGTACCACGGGCCGGGCGGACCCACGGCCGGATCGGTCAGAGCAAACAGCGCCATTTAGCCCTCTGCCCGCATTTTTTGTCGCCCCATCTCCGCCGCAAAgac                                                            >  2:320890/1‑247 (MQ=255)
                                                                                                                                                                                                        cGCTGCCAGCCAGCAATTGGCGGGTTTTCTCGCGTTCCGCCGCCCGTGCTTTTACCGTACCCCGGCGGGCAGTAACCTCCGCCCGCTTCTTTCCCCAGATATCGAGATGCCAGCCCCCCCTTAAGCCCAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGGTCGTTCCGAGCAAACGGCCCCCTTAAGCCTTCTGCCGCCATTTTTTTCCCCCCCCTCTCCCCCCAAAAGTCGATCtt                                                      >  2:976221/1‑249 (MQ=255)
                                                                                                                                                                                                            gccagccaACAATTGGCGGGTTTGCTCGCGTCCCGCCGCCCGTGTTTTACCCGCCCCCAGGCGGGAAGAACCCCCCGCCCGATTCTTCCCCCAGATATCGAGAGGCCGGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGa                                                  <  1:856397/250‑1 (MQ=255)
                                                                                                                                                                                                                   agcAATGGGCGGTTTTGCGCGCGTCCCCCCGCCCGTGCTTTACCCGTCCCCAGGCGGGCAGTACCCCCCGCCCAATTCTTTCCCCAGATATCGAGATCCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCt                                           <  1:75299/250‑1 (MQ=255)
                                                                                                                                                                                                                     cccttGGCGGGTTTCGCCCGCTTCCCCCCCCCCTTTTTTAACCCGACCCCGGGGGGGCAGTACCCCCCCCCCTTTTTTTCCCCCAATTTCCGGGTGCCCGCCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTg                                          <  2:289262/247‑1 (MQ=255)
                                                                                                                                                                                                                        ttGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCCGCCCGCCGTTAAGCCAAAAATACCGGTTGTGTACCACCGGCCGGGCGTACCTGCGGGCGGAACGGTCAGAGCAAAAGGCCCCATTTAGCCTTCTGCCGACATTTTTTGCCGCTCCATATTCCCCGCAAAGTCGATCTGCGGACCATCCTGCGTg                                      >  2:526205/1‑250 (MQ=255)
                                                                                                                                                                                                                            ggctgtttgccgcgcgTCCCGCCCCCCGCTTTTTACCCGCCCCCGGGCGGGCAGTACCCCCCCCCCTTTTCTCTCCCCATATCTGGAGATCCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTgg                                     <  2:329817/237‑1 (MQ=255)
                                                                                                                                                                                                                                gTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTg                               >  1:735847/1‑250 (MQ=255)
                                                                                                                                                                                                                                gTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTg                               >  1:602011/1‑250 (MQ=255)
                                                                                                                                                                                                                                              ccgccgCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGGCGATCTGCGGACCATCCTGAGTTGCAACTGCCTTCGCCTTGGc                  >  1:1536632/1‑250 (MQ=255)
                                                                                                                                                                                                                                              ccgccgCCCGTCTTTTACCCGTCCCCAGGCGGGAAGTACCCCCCCCCCGTTTCTTCCCCCAGATTCCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGc                  <  1:362212/250‑1 (MQ=255)
                                                                                                                                                                                                                                                 ccgccCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCtt                >  1:32922/1‑249 (MQ=255)
                                                                                                                                                                                                                                                    cccGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagc            >  1:930438/1‑250 (MQ=255)
                                                                                                                                                                                                                                                       gTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagctag         >  2:1401924/1‑250 (MQ=255)
                                                                                                                                                                                                                                                            ttACCCGTCCCCAGGCGGGCAGTACCCCCCCCCCGATTCTTCCCCCAAATAGCGAGACGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGa     <  1:1025046/249‑1 (MQ=255)
                                                                                                                                                                                                                                                              aaCCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATg  >  1:1176599/1‑250 (MQ=255)
                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                   
CCCCGCGACATCGTTGAGCTGCTGCCGGGTTTTGCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTCTATTTGCTGCAAGACCGTGTTTAACGCCGCCTGGGTTTGCCACTCCCAGTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGTTTGCTCGCGTTCCGCCGCCCGTGCTTTAACCGTACCCAGGCGGGCAGTAACCTCCGCCCGATTCTTTCCCCAGATATCGAGATGCCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGGCCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCATATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATG  >  NZ_CP009273/2221483‑2221978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: