| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,217,689 | 0 | G | A | 40.0% | 79.3 / 21.0 | 55 | pseudogene (2228/2243 nt) | BW25113_RS25990 | autotransporter outer membrane beta‑barrel domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (29/4); new base A (0/22); total (29/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.15e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CAGGAGAAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGCATTACCCAT > NZ_CP009273/1217442‑1217922 | cAGGAGAAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑Ga > 2:824464/1‑249 (MQ=255) aGGAGAAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑Gaa < 2:567502/249‑1 (MQ=255) tCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATccc < 1:607668/250‑1 (MQ=255) tCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATccc < 2:476115/250‑1 (MQ=255) aCGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGt > 1:596045/1‑250 (MQ=255) gacgacTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGc > 1:790866/1‑249 (MQ=255) tttGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTaaaaaa > 2:611818/1‑250 (MQ=255) tttGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGcgtcg > 2:102689/1‑249 (MQ=255) gAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAGACCGCGTCGTATTcct > 2:220326/1‑248 (MQ=255) aaTGAGTTGGTTCAAAAAAAGAAAAGTTTTGGTGGTCTAAATAAGGGGTGTAAAGGTCAAAAAGGAGGGGGGAATTAGTTGGGGGAAAATTAAGCGG‑GGCG‑AAAGG‑GCAACCCTA‑AACCCAG‑CGCCCAGCGTGTGGGGATGGGGGGCGTGCGGCTGGTTAATATGGCCTACAATC‑CCCCCGAAGTG‑TGGGGGGCCTT‑AAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCg < 2:565342/250‑1 (MQ=255) aaCTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTAATCGAcgc > 2:472912/1‑250 (MQ=255) taggacaccATAAAAAGAAAGGTTTTGCTGTCAAAATAAACGGTTAGAAAGTAGAAAAAGGTGGGGCGAAT‑ATTTGGGGGAAAATTAATTT‑GG‑GTAAAAGTGACA‑CCTGAAACCCGG‑CGCCCGGCGTGTGGGGATTGGGGGCGTGCGGTTGGGTGATAAGGGTTCCAATG‑ACCCCGCGGTGTTGGTGGGCT‑T‑AAAATATAAGGTTTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGAcgcg < 2:265218/243‑1 (MQ=255) aCTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAATAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGAcgcg > 1:487410/1‑250 (MQ=255) aCTGGATCCAAAACAGTAAAGTTTTTTCTTTCTCAAGGAACGGTGAGAAAGTCGAAAAAGATGGGGCGAGTATTGTGGGGAAAATTAAACTT‑GGCGTAAAGG‑GCAC‑CCTA‑AACCAAG‑CGGCCAGCGTCTGGGGAATGGGGGCGGGCGGCTGGGTGATAAGGGCTACAATG‑ACCCCGCAGTGAGGGTGGGCT‑T‑AAAATATAATTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGAcgcg < 2:122570/250‑1 (MQ=255) cTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCgg > 1:639347/1‑250 (MQ=255) tggaccaaaaaaaGTAAAGATTTTGCTGTATAAAGAAGAGGTGAGAAAGTCAAACAGGAGGGGGGGAGAATTTTGGGAAAAATTAAACTG‑GGCGAAAAGG‑CAAA‑CCGA‑AACCCAG‑CGGCCGGCGTGGGGGGAATGGGGGCGTGCAGCTGGGTGAAAATGGCTACAATG‑ACCCCGCAGTGATGGTGGGCC‑T‑AAAATATAAGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGt < 2:756105/238‑1 (MQ=255) gATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTa > 1:209041/1‑249 (MQ=255) ataaataacgaaaaaGGTTTTGCAGTCACGAGGATCGGAGGGAAAGAGAAACAAAGGGGGGCGAGAAATTGGGGGGAAAAAAAGCTG‑GGCGAAAAGG‑GCAC‑CCTA‑AATCCAG‑CGGCCAGCGTGGGGGAAAGGGGGGGGTGCAGCTGGGTATTAATGGCAAAAATG‑CCCCCGCAGTGATGGTGGGCC‑A‑AAAATATAATTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACa < 2:269475/238‑1 (MQ=255) ccATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACata > 1:222428/1‑250 (MQ=255) aaaGATTTTGCTGTCAAAAGGAACGGTGTAAAAGTCGAAAAAGAGGGGGCGAGTAATTGGGGGGAAATTAAACTG‑GGCGTAAATG‑GCAC‑CCTG‑AATCCAG‑CGGCCGGCGTGTGGGGAATGGGGGCGTGCAGCGGGGTGATAATGGCTACAATG‑ACCCCGCAGTGATGGTGGGCT‑T‑AAAATATAATTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAAtatta < 2:194169/250‑1 (MQ=255) aaGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACCTATGAAAtattat > 2:577703/1‑250 (MQ=255) ttttGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTAttttt > 1:707267/1‑250 (MQ=255) tcAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAg > 1:164652/1‑249 (MQ=255) aaTGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCAc > 2:521865/1‑250 (MQ=255) gtgtAAAAGTCAAAAAAGAGGGGGCGAGTAA‑TTGGGGGAAAATAAACTTGGGCGTAAGTG‑GCAC‑CCTA‑AACCCAG‑CGGCCAGCGTCTGGGGAAGGTGGGCGGGCAGCTGGGTAATAATGGCTAAAATG‑ACCCCGCGGTGATGGTGGGCC‑G‑AAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGgtg < 1:885461/250‑1 (MQ=255) aaGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGtcatc > 1:430550/1‑249 (MQ=255) gTCGAACAAGATGGGGCGAGTAATTTGGGGGCAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGATACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GTAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGGATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCTATAGCACGCATGGTGTCATAAAt > 2:863814/1‑250 (MQ=255) gTCGAAAAAGATGGGGCGAGTATTTGGGGGAAAATTAAACTG‑GGCGAAAAGG‑GCAC‑CCTG‑AACCCGG‑CGGCCAGCGTCGGGGGAATGTGGGCGTGCAGCGGGGTGATAATGGCTACAATG‑ACCCCGCAGTGATGGTGGGCC‑T‑AAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAAt < 1:367577/250‑1 (MQ=255) aaCAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGcc > 1:154893/1‑250 (MQ=255) cagggtGGGGGGAGTAATTGGGGGAAAATAAAAGTT‑GGCGTAAATG‑GCAA‑CCAG‑ACCCCGG‑CGCCCAGCGTCGGGGGAATGGGGGCGGGGGGGTGGGTTATAATGGCAAAAATG‑ACACCGCAGTGATGGGGGGCC‑T‑AAAATATAATTTCTCATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGt < 2:24751/245‑1 (MQ=255) cAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGt > 1:43945/1‑250 (MQ=255) aGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCAt > 1:160760/1‑250 (MQ=255) gTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CATG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGAGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCAtt > 1:813549/1‑250 (MQ=255) attggggaaaaattaaattT‑GGCGTAAAGG‑GC‑A‑CCTGAAACCCGG‑CGGCCAGTGTGGGGGAAGTGGGGGCGGGAGGCGGGTTAATAATGGCTACAATG‑CCCCCGCAGTGATGGTGGGCA‑T‑AAAATATAAGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTg < 2:311273/240‑1 (MQ=255) tttGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCg > 1:586829/1‑250 (MQ=255) gggggagAAATTAAATTG‑GGCAAAAAGG‑GCAC‑CCTA‑AACCCGG‑CGGCGAGCGTGTGGGGAGTGGGGGGGGGCAGCGGGTTTATAAGGGCTAAAATG‑ACCCCGGAGGGTTGG‑GGGCC‑TAAAAATATATTTTTGGTCCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCgg < 2:198097/248‑1 (MQ=255) ggggAAAATAAATTT‑GGGGGAAATG‑GGCA‑CCCG‑AAACCCGCCGGCGGGCGTTGGGGGAGGGGGGGGGTGCGGGTGGGTGATAATGCCTAAAAGC‑ACCCCGGAGTGATGGGGGGCC‑T‑AAAATATATGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGt < 2:851511/250‑1 (MQ=255) aaaTTAAACGG‑GGGGAAAAGG‑GCAC‑CCGA‑AACCCAG‑CGGCCGGCGGGTGGAGAATGGGGGGGTGCAGGGGGGTGAAAAGGGCAAAAACA‑CCACAGAGGTGATGGTGGCCA‑T‑AAAATATAATTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTa < 2:415302/250‑1 (MQ=255) aaaTAAAAGTT‑GGCAAAAGTG‑GCAT‑CCGG‑ACTCAGG‑CGGCCGGCGTGGGGGGAAGGTGGGGGTGCGGGGGGTAGAAAATGGC‑ACAAAGCACCCCGAATGGAGGGGGGGCC‑T‑AAAATATAAGTTCTGCTCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTa < 2:117332/250‑1 (MQ=255) tAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAgcg > 1:417080/1‑249 (MQ=255) aaagtG‑GCAC‑CCTG‑AACCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTAATAATGCCTACAATG‑CCCCCGCAGTGATGGTGGGCC‑T‑AAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTc < 1:126780/246‑1 (MQ=255) gaaagtgccacccTG‑AATCCGG‑GGGCAGGCGTCGGGGGAAGGGGGGCGTGCAGTTGGGTAATAATGGCTACAATG‑CCACCGCAGTGATGGTGGGCC‑T‑AAAATATAATTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGAtt < 1:685370/239‑1 (MQ=255) aaTG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAg > 2:490455/1‑250 (MQ=255) ccga‑CCAG‑AAGCCAG‑GGCCCGGCGTGGGGGAAAGGGGGGGGGGCAGGGGGTTAATAGTGGCTAAAATG‑ACCCCGGAGGGTGGGGGGACA‑T‑AAAAAAAAATTTCTGCCCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGtttt < 2:726223/247‑1 (MQ=255) ccacccgg‑AACCCAG‑CGGCCGGTGTTTGGGGAAGGGGGGCGTGCAGTGGGGTGATAATGGCTACAAGG‑CCACCGAGGTGTGGGTGGGCT‑A‑AAAATATAAGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGtttt < 2:639347/243‑1 (MQ=255) cAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTg > 2:352503/1‑250 (MQ=255) ggggCCAGCGTCGGGGGAATGGGGGCGTGCAGCTGGGTAAAAATGGCTACAAGG‑ACCCCGGAGTGATGGGGGGCC‑T‑AAAATATAAGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGgc < 1:585789/248‑1 (MQ=255) agtgtgtGGGGAAGGGGGGCGTGCAGCTGGGTAAAAATGGCAAAAAGG‑ACACCGGGGTGAGGGTGGCAA‑A‑AAAATATAAGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAg < 2:669974/244‑1 (MQ=255) tGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCg > 1:232207/1‑249 (MQ=255) gggggAGTGGGGGCGTGCAGCTGGGTAATAAGTGCTAAAATG‑ACCCCGCAGGGGTGGTGGGCA‑A‑AAAATATAAGTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCg < 2:22244/248‑1 (MQ=255) cTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAAt > 1:247171/1‑250 (MQ=255) cAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTg > 1:644974/1‑250 (MQ=255) caccgcggggtgggtggGCT‑T‑AAAATATAATTTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGcatta < 1:421753/238‑1 (MQ=255) cGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGcattacc > 1:424037/1‑249 (MQ=255) taGTGGTGGTGGGCA‑C‑GAAATATAAGTCTTAACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGcattacccat < 2:61702/249‑1 (MQ=255) | CAGGAGAAAAACAGCGGTCCGCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAACGGTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTT‑GGCGTAAATG‑GCAA‑CCTG‑AATCCAG‑CGGCCAGCGTCTGGGGAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATG‑ACACCGCAGTGATGGTGGGCC‑T‑GAAATATAAGTTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCTGATTCAGTTTTTCTACCACTTTGGCGCTCAGTTCCGGAGATTGCTCAATTTTTAAATCACGGCTGGCAACGCTGGCATTACCCAT > NZ_CP009273/1217442‑1217922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |