| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,340,902 | 0 | G | A | 34.9% | 75.1 / 10.6 | 43 | S33F (TCT→TTT) | pdeR | cyclic di‑GMP phosphodiesterase |
| Reads supporting (aligned to +/- strand): ref base G (25/3); new base A (0/15); total (25/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.38e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCTCAGCAAAGGAAAGCCCGTGTGATAAATCACGAGCAACCGCCGGTGTGTCATGCCATGCAGACGCGTTGCCAGCCCATTCCCGTTTATT‑GATTTTTCGTCCTACCAGATGCACAGAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAG > NZ_CP009273/1340657‑1341149 | gCTCAGCAAAGGAAAGCCCGTGTGATAAATCACGAGCAACCGCCGGTGTGTCATGCCATGCAGACGCGTTGCCAGCCCATTCCCGTTTATT‑GATTTTTCGTCCTACCAGATGCACAGAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGaa > 1:665822/1‑248 (MQ=255) gCCCGTGTGATAAATCACGAGCAACCGCCGGTGTGTCATGCCATGCAGACGCGTTGCCAGCCCATTCCCGTTTATT‑GATTTTTCGTCCTACCAGATGCACAGAAAGATCGCTTTCATCGACGGTAAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGGTCGGCAGATAACTGCAATGTTCGCACAGGGTCTGTG‑GTTTCG‑GTGGGAGAAAAGCGCAAGACactgct > 2:156497/1‑245 (MQ=255) cccGTGTGATAAATCACGAGCAACCGCCGGTGTGTCATGCCATGCAGACGCGTTGCCAGCCCATTCCCGTTTATT‑GATTTTTCGTCCTACCAGATGCACAGAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCgctg > 1:17057/1‑250 (MQ=255) tgtgATAAATCACGAGCAACCGCCGGTGTGTCATGCCATGCAGACGCGTTGCCAGCCCATTCCCGTTTATT‑GATTTTTCGTCCTACCAGATGCACAGAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCttt > 2:746219/1‑250 (MQ=255) cccGAGCAACCGCCGGTGTGTCATGCCATGCAGACGCGTTGCCAGCCCATTCCCGTTTATT‑GATTTTTCGTCCTACCAGATGCACAGAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCg < 1:81252/248‑1 (MQ=255) ccggtggtttCATCCCCTGCAACCGCGTGCCCACCCCTTCCCCTTTTTTT‑GTTTTTCCTTCCAACCAAAGGCACAGAAAGTTCGTTTCCAGCGCCGGTCAGACTCACCATCGGGCGGGGGGTGATGACCGTCATTCCCCGGATGCGAGCGGCCTGTGCGGCAGAAAACGGCAATGTACGATCAGGTTCTGTG‑TTTTCG‑GTGGTAAAAAAGCGAAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGAt < 2:858773/241‑1 (MQ=255) cgTTGCCAGCCCATCCCCTTTTATT‑GTTTTTTCGCCCTACCAGATGCACAAAAAGATCGTTTTCATCGACGTCCAGACTCATCATCAGGCTGGAGGTGATGCCCTTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGTTTCTGTG‑TTTTGG‑GTGGTAAAAAAGCGAAAAACATCGCTGCTTCCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACaa < 1:856882/250‑1 (MQ=255) gcccACCCCTTTCCTGTTTATT‑TATTTTCCGCCCTACCATATACACAAAAAGTTCTCTTCAATCGACGGACAATCACACAATCGGGGGGGATGTGATGCCCTTCTTTTCCCTGATGCGAGCAGCCTGTTCGGCAAATAATGCCAATGTCCGATTGGGTTTTGTG‑GTTTGG‑GTGGTAAAAAAGCGCAAAACACCGCTGTTTTCCTTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAAc < 2:868240/246‑1 (MQ=255) accccATTCCC‑TTTATTGGATTTTCCGTCCTACCAGAGGCAGAAAAAGACCCTTTTCATCGCCGGTCAGCCTAACCATAAGGCGGGAGGTGATGACCGTCTTGTCCGTGATGCGAGCAGCCTTTTGGGAAGAAACCTGCAATGTACGACCAGTTTCGGTG‑GTTTGG‑GTGGAAAAAAAGCACAAACCATCGCTTTTTTCCGTAAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTtgtg < 2:693841/248‑1 (MQ=255) ccccATTCCCTTTTATT‑GTTTTTCCGCCCTACAAGATGCAAAAAAAGATCGCTTTCATCGGCGGTCAGCCTCACCATCAGGTTGGGGGTGATGCCCGTCTTTCCCCGGATGCGAGCGGCTTGTTCGGAAAATAACTGCAATTTCCGATCGGGTTCTGTG‑GTTTCG‑GTGGTAAAAAAGCGAAAAACATCGCTGTTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTgg < 2:144370/249‑1 (MQ=255) ccccATTCCCTTTTATT‑GATTTTTCGTCCTCCCAGATGAACAAAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGCCCGTCTTTCCCCTGATGCGAGCAGCCTGTTCGGAAGATAACTGCAATGTACGATCAGTTTCTGTG‑TTTTGG‑GTGGTAAAAAAGCGCAAACCATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTgg < 1:312683/249‑1 (MQ=255) ccATTCCCGTTTATT‑GATTTTTCGTCCTACCAGATGCACAGAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGAc > 1:470169/1‑250 (MQ=255) ttCCCGTTTATT‑GATTTTTCGTCCTACCAGATGCACAGAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCACTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAAAATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTcc > 2:201311/1‑250 (MQ=255) tCCCGTTTATT‑GATTTTTCGTCCTACCAGATGCACAGAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTccc > 1:101602/1‑250 (MQ=255) cTACCAGATGCACAGAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGCTGCatat > 2:783416/1‑250 (MQ=255) cccAGATGCACAGAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCGGGAGGTGATGACCGTCTTTCCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGTTTCTGTG‑TTTTGG‑GTGGTAAAAAAGCGCAAACCATCGCTGCTTCCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATAtcc < 1:80347/249‑1 (MQ=255) gATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCg > 2:696968/1‑248 (MQ=255) tttCATCGACGGTCAGACTCATCATCAGGCTGGCGGTGATGACCGTCATTTCCCTGATGAGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAAACGCCAGTAAGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCcgt > 1:660594/1‑249 (MQ=255) cGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTta > 1:273513/1‑249 (MQ=255) cGACGGCAAGACTCATCATGAGGCGGGGGGTGATGACCGTCATTCCCCGGAGGCGAGCACCCTGTTCGGAAGATAACTGAAATGTACGATCGGGTTCTGTG‑GTTGGG‑GGGGAAAAAAAGCGAAAAACATCGCTGTTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTtaa < 1:485955/250‑1 (MQ=255) tCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCTGTtaaataa > 1:824390/1‑248 (MQ=255) tCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTtaaataa > 1:529630/1‑248 (MQ=255) cAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGTGGTTAAATAAAAg > 1:806020/1‑250 (MQ=255) cAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAg > 2:691207/1‑250 (MQ=255) tcaGGCTGGAGGTGATGACCGTCTTTCCCCTGATGCGAGCAGCTTGTCGGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑TTTTGG‑GTGGAAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGa < 1:559771/250‑1 (MQ=255) tGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACa > 1:340025/1‑250 (MQ=255) ggTGATGACCGTCATTCCCCTGTTGCGAGCCGCCTTTTCGGAAGAAAACTGCATTGAAGGATCAGTTTTTGGG‑TTTTCG‑GTGGTAAAAAAGCGCAAAACACCTCTCTTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGaa < 1:878131/250‑1 (MQ=255) cccgtaggCGAGCAGCCGGTGCGGAAGATAACTACAATGTACGATCAGGTT‑TGTGTGTTGCG‑GTGAAAAAAAAGCGAAAACCATCGCTTCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAAc < 2:529630/243‑1 (MQ=255) tGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCa > 1:206913/1‑250 (MQ=255) gtcttGTTCGGAAAATACCTGAAATGTACGATGAGGTTTTGTG‑GTTTGG‑GTGGAAAAAAAGCGCAAAACTCCGTTTTTTCCCATCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGttttttt < 2:81723/246‑1 (MQ=255) agcCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGttttttt > 1:115752/1‑250 (MQ=255) agcCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAAAGCATTGttttttt > 2:2414/1‑250 (MQ=255) ccTGTTCGGCAGATACCTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAACGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGACCGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAACAGGAACAACATGACTTACATGAAATTAACGGCGGCTCAACGCATTGgtttttttt > 1:141264/1‑249 (MQ=255) cAATTTACGATCAGGTTCTGTG‑GTTTGG‑GTGGTAAAAAAGCGCAAAACTCCCCTGTTTCCCGTAAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCa < 1:248207/250‑1 (MQ=255) tgatcatttcggTTTTGGG‑GGTTCGTGTGGAAAAAAACCGAAAAACCCCCCTGCTTCCCACAACCCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGt < 2:428827/240‑1 (MQ=255) tGTACGTTCAGTTTTTGTG‑GTTTGG‑GTGGTAGAAAAGCGAAAAACATGTCTGTTTTCCGTAAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGtt < 1:563117/250‑1 (MQ=255) gATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTTTTTATTTATTTGTAATCCAGTTTTgg > 2:378626/1‑249 (MQ=255) gTTTTGTG‑TGTTCG‑GGGATAAAAAAGCAAAACACGGCTCTTCTTTCCCACAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGTGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAAc < 2:801105/249‑1 (MQ=255) gtg‑GTTGGG‑GTGGTAAAAAAGCAAAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAg < 1:56390/249‑1 (MQ=255) cG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCAAGTTTTTaa > 1:194971/1‑249 (MQ=255) tggtAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACg > 1:647696/1‑249 (MQ=255) tggtAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAAAGCCAGTTTTCAAACg > 1:810597/1‑249 (MQ=255) tAGAAAAGCGCAAAATATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCCTTTTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAg > 2:497583/1‑250 (MQ=255) | GCTCAGCAAAGGAAAGCCCGTGTGATAAATCACGAGCAACCGCCGGTGTGTCATGCCATGCAGACGCGTTGCCAGCCCATTCCCGTTTATT‑GATTTTTCGTCCTACCAGATGCACAGAAAGATCGCTTTCATCGACGGTCAGACTCATCATCAGGCTGGAGGTGATGACCGTCATTTCCCTGATGCGAGCAGCCTGTTCGGCAGATAACTGCAATGTACGATCAGGTTCTGTG‑GTTTCG‑GTGGTAGAAAAGCGCAAAACATCGCTGCTTTCCGTCAACCGCCAGTATGGATTGTGCGATCCGAGAAAGTTGTACAACGTTGTGGACTCCCTAACGGTTTTCATGATGCATATCCTCCGGTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAG > NZ_CP009273/1340657‑1341149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |