| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 117,994 | 0 | A | T | 28.1% | 157.7 / 12.0 | 64 | L15L (CTT→CTA) | aroP | aromatic amino acid transporter AroP |
| Reads supporting (aligned to +/- strand): ref base A (2/44); new base T (18/0); total (20/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.28e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTTCCAGCCAGAGGCGAAACCGGCAAAACTGCCCCAGTATTTATAAGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGAATAATGGTATGCGGCAGCGAATGCACCCGCTTTATGCATGGTTGAAGATGAGTTGCTTAAAAAGAAACCGT > NZ_CP009273/117745‑118243 | gtTCCAGCCAGAGGCGAAACCGGCAAAACTGCCCCAGTATTTATAAGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTa < 1:95156/250‑1 (MQ=255) agccagAGGCGAAACCGGCAAAACTGCCCCAGTATTTATAAGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGcc < 2:312333/250‑1 (MQ=255) gagGCGAAACCGGCAAAACTGCCCCAGTATTTATAAGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCt < 2:369443/250‑1 (MQ=255) gagGCGAAACCGGCAAAACTGCCCCAGTATTTATAAGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCt < 1:264733/250‑1 (MQ=255) ggCGAAACCGGCAAAACTGCCCCAGTATTTATAAGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGCGGGTTTTTTAGGCCCC‑GCtt > 2:29744/1‑250 (MQ=255) ccGGCAAAACTGCCCCAGTATTTATAAGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGGTTTTATTGCCGCGGCTTTa‑ctgct > 1:437336/1‑250 (MQ=255) aaaaCTGCCCCAGTATTTATAAGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTTAGACGC‑GCGTTAcctggctctct > 2:585021/1‑243 (MQ=255) aaaCTGCCCCAGTATTTATAAGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGGCCGC‑GCTTTAGCTGCTCTCCgc > 1:288081/1‑249 (MQ=255) ccAGTATTTATAAGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGa < 1:301800/250‑1 (MQ=255) aGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCAGTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCcatcat < 2:481515/249‑1 (MQ=255) tGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTc < 1:545067/250‑1 (MQ=255) gCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGt < 2:491738/250‑1 (MQ=255) cgCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCggtggt < 2:240353/249‑1 (MQ=255) gCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGgtt < 1:14695/250‑1 (MQ=255) ttctacGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATc < 2:555807/250‑1 (MQ=255) cGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTa < 1:286174/247‑1 (MQ=255) gACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTGCGCa < 1:22587/250‑1 (MQ=255) caccaTTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTATGTCGC‑GCCTTTGCTTCTCGCCGGTCTGTTTGCCCTTCC‑TCATGAAACCCTCGGGGGGGGGTGGtttttttttttttcccggt > 2:400773/1‑238 (MQ=255) accaTTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGa < 1:236650/250‑1 (MQ=255) caTTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATg < 2:357186/250‑1 (MQ=255) aCCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCgtgt < 1:285072/249‑1 (MQ=255) cTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGtt < 1:371957/250‑1 (MQ=255) cTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGtt < 1:551260/250‑1 (MQ=255) gCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGTCCTTCCCTCATGAAA‑ACTCGTGGGGTGGTTGTTTTTTTTATCTACGCAGTGGTGCGTGTGTAAGTTTGCaa > 1:625565/1‑250 (MQ=255) gAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGACCCC‑GCCTTTTCCGCTCGCCCGTCTG‑TTTGACTTCCATCATGAAA‑CCACCTTGGGGGGTGGGTTTTTTTTTTTAAGCCGGGTTGGGTGGGTGAGTTTGCTATTTCGAttg > 2:565124/1‑250 (MQ=255) aaaGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTttgt < 2:63662/250‑1 (MQ=255) aaGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTTACCTTCCCTCCTGAAA‑CCTCGTGCGGGGGGTGTTTTTTTTATTTTCGCAGTGATGCGTGTGTAAGTTTTCAATTTCCtttttt > 1:207247/1‑250 (MQ=255) aaGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTttgtt < 1:574872/250‑1 (MQ=255) aTAAAACCAGCAATGGCGTAACCCAGGATAATCCCGGTCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTa < 2:531478/250‑1 (MQ=255) aaaCCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAAtt < 1:347892/250‑1 (MQ=255) aaCCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAAttt < 1:544323/250‑1 (MQ=255) aaCCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAAttt < 2:56866/250‑1 (MQ=255) aaCCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAAttt < 1:233706/250‑1 (MQ=255) gccAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACGGTATTGCGGAGGCGCTGCCCAGGAATAGCCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTg < 2:576613/249‑1 (MQ=255) aCCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGGCCGC‑GCCTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑ACTCGTGCGGGGGGTGGTTTTTT‑ATTTACGCAGTGATGCGGGTGTAAGTTTTGAATTCCCTTTGTTGTATTAATTTGt > 1:231060/1‑250 (MQ=255) cAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGGCCGC‑GCTTTTGCTGGTCGCCGTGCTG‑TTGACCTTTCATCATGAAA‑ACTCGTGCGGGGGGTGTTTTTTTTATTTACGCCGGGATGCGTGGGGAAGTTTGGAATTCCGTTTGTTTTATTAATTTGTTTa > 1:136675/1‑249 (MQ=255) ccAGGATAAACCCCGGCCCTGCGGAACTG‑ATTACCGAGGCCCTTCCCCGGAAAAACCCGGTCCCTATCCCGCCCCCCAGCGCGATTAGCCTAATATGGC‑CGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGtt < 2:147063/250‑1 (MQ=255) cAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGttt < 2:145429/250‑1 (MQ=255) cAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAAGTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGttt < 1:618490/250‑1 (MQ=255) aGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGCCTTTTAGGGCGC‑CCCTTATCTGCTCCCCGTGCTG‑TTTACACTCTTTTATGAAA‑ACTCGTGTGGGGGTTTTTTTTTTTTTTTATGCCGCGCTGGGGGTGTTTGTTTTCAAATCCGTTTTTTTTTTTTATTTTTTTTATTTAAATAAGttt > 2:104561/1‑249 (MQ=255) tCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGtt < 1:401871/250‑1 (MQ=255) tGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTTCCTCCTGAAA‑CCTCGTGCGGGGGTTGTTTTTTTTATCTTCGCCGGGATGCGTGTGGAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTTCATTAAAGAAGTTTTGATTGtttaa > 1:24764/1‑246 (MQ=255) tGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGGCCGC‑GCTTTAGCTGCTCGCCGGGCTG‑TTGGCCTTCCATCATGAAA‑CCTCGTGCGGGGGGTGTTTTTTTTATCTACGCAGGGATGCGGGGGTAAGGTTTGAATTCCGTTTGTTGTATTAATTTTTTTTTATCAAAGAAGGTTTAATTTTTTCa > 1:224678/1‑249 (MQ=255) gCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACaa < 2:41284/248‑1 (MQ=255) gCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACaa < 2:416075/248‑1 (MQ=255) cccTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACaaaaa < 1:415084/250‑1 (MQ=255) ccTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGGCCCC‑GCTTTAGCTGCTCGCCGGGCTG‑TTGACCTTCCCTCATGAAA‑ACTCGTGCGGTGGTTGTTTTTTTTTTCTTCGCAGTGATGGGGGTGTGAGTTTGCAATTTCGTTTTTTGTTTTAATTTGTTTTCATTAAAAAAGATTGTATTTTTACaaaaa > 2:47285/1‑249 (MQ=255) cTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑ACTCGTGCGGGGGGTGTTTTTTTTATCTTCGCAGGGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTTCATCAAAGAAGTTTTAATTGTTACaaaaaaa > 1:191721/1‑248 (MQ=255) g‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTcc < 1:389739/250‑1 (MQ=255) aCTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCg < 2:109305/250‑1 (MQ=255) gagtgcGGAGGTGCTACCCAGGAATAACCCGGTCCCTTTCGCGCCACCCAGCTCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑TCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTTCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCa < 2:340365/244‑1 (MQ=255) ttACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAAGCCCC‑GCCTTTTCTGCTCGCCGTGCTG‑TTGATCTTCCACCATGAAA‑ACTCCTGCGGGGGGTGTTTTTTTTTTCTACGCAGTGATGCGTGTGTAAGTTTGCGATTTCGTTTTTTGTTTTTATTTTTTTTTATCAAAAAAGGTTGTATTGTTATAAAAAAACATCCGTcc > 2:231162/1‑246 (MQ=255) ttACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGAt < 1:285033/250‑1 (MQ=255) gAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGa < 2:87782/250‑1 (MQ=255) cTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGGCCGC‑CCCTTAGCTGCTCGCCCGGCTG‑CTTTCACTCCCTCATGAAA‑CCCCCGGGGGGGGGTGTTTTTTTTATCTTCGCCGTGATGGGTGTGGAAGTTTGCAATTCCGTTTTTTGTATTAATTTTTTTTCATCAAAGAAGTTTGAATTTTTACAAAAAGAATTCCGTCAGAACAAGAATAATg > 2:570959/1‑250 (MQ=255) ccAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAAGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTTGCCTTCCATCATGAAA‑CCTCGTGCGGGGGGTGTTTTTTTTATCTACGCAGGGATGCGTGTGTAAGTTTTCAATTTCGTTTTTTGTATTAATTTTTTTTCATCAAAAAAGTTTTAATTGTTACAAAAAAACTTCCGTCAGATCAAAAATAATTGTAt > 1:501354/1‑250 (MQ=255) tAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTTAGGCCGC‑GCTTTTTCTGCTCGCCGTGCTG‑TTTACCTTCCATCATGAAA‑ACTCGTGCGGGGGGTGTTTTTTTTTTCTACGCAGGGATGCGTGTGTAAGTTTGCAATTTCGTTTGTTGTATTAATTTGTTTTCATCAAAGAAGTTTGAATTGTTACAAAAAGACTTTCGTCAGATCAAGAATAATGGTATGCGGCAg > 1:491641/1‑250 (MQ=255) aCCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGAATAATGGTATGCGGCAGc < 2:28295/249‑1 (MQ=255) gcCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTGTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGAATAATGGTATGCGGCAGCGAATGCACCCGCTTTAt < 1:470389/250‑1 (MQ=255) aCCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTCTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGAATAATGGTATGCGGCAGCGAATGCACCCGCTTTATGCa < 1:225780/250‑1 (MQ=255) agactaaTATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGAATAATGGTATGCGGCAGCGAATGCACCCGCTTTATGCATGGTTGAAGATGa < 2:517057/245‑1 (MQ=255) gC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGAATAATGGTATGCGGCAGCGAATGCACCCGCTTTATGCATGGTTGAAGATGAGTTGCTTaaaa < 1:47285/250‑1 (MQ=255) c‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGAATAATGGTATGCGGCAGCGAATGCACCCGCTTTATGCATGGTTGAAGATGAGTTGCTTaaaaa < 1:89677/250‑1 (MQ=255) tttAAGGCCGC‑GCTTTAGCTGCTCGCCGTTCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGAATAATGGTATGCGGCAGCGAATGCACCCGCTTTATGCATGGTTGAAGATGAGTTGCTTAAAAAGaaa < 1:396717/249‑1 (MQ=255) ttAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGAATAATGGTATGCGGCAGCGAATGCACCCGCTTTATGCATGGTTGAAGATGAGTTGCTTAAAAAGAAAcc > 1:22034/1‑250 (MQ=255) aaGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGAATAATGGTATGCGGCAGCGAATGCACCCGCTTTATGCATGGTTGAAGATGAGTTGCTTAAAAAGAAGCCGt > 1:192302/1‑250 (MQ=255) | GTTCCAGCCAGAGGCGAAACCGGCAAAACTGCCCCAGTATTTATAAGCAAAGTGGCTAAAGGAGCCTGCGACAGGTTCTTCGACCACCATTTCACCCAGCTGACGCATGATCAGAAAGGCGATAAAACCAGCAATGGCGTAACCCAGGATAATCCCTGGCCCTGCGG‑ACTGTATTACGGAGGCGCTACCCAGGAATAACCCGGTCCCTATCGCGCCACCCAGCGCGATAAGCTGAATATGGC‑GGTTTTTAAGGCCGC‑GCTTTAGCTGCTCGCCGTGCTG‑TTGACCTTCCATCATGAAA‑CCTCGTGCGGTGGTTGTTTTTTTGATCTACGCAGTGATGCGTGTGTAAGTTTGCAATTCCGTTTGTTGTATTAATTTGTTTACATCAAAGAAGTTTGAATTGTTACAAAAAGACTTCCGTCAGATCAAGAATAATGGTATGCGGCAGCGAATGCACCCGCTTTATGCATGGTTGAAGATGAGTTGCTTAAAAAGAAACCGT > NZ_CP009273/117745‑118243 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |