| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 554,632 | 0 | T | A | 29.7% | 120.8 / 15.2 | 65 | V68E (GTA→GAA) | fimC | type 1 fimbria chaperone FimC |
| Reads supporting (aligned to +/- strand): ref base T (23/22); new base A (0/19); total (24/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.41e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCCTTATTTTTGCCGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAATTATTTCTCCGTCCAATTCAATTACAAGAATTACCCGCAG > NZ_CP009273/554389‑554880 | tCCTTATTTTTGCCGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTaaaag > 2:90481/1‑249 (MQ=255) cTTATTTTTGCCGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTaaaagaaa < 2:542551/250‑1 (MQ=255) cTTATTTTTGCCGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTaaaagaa < 2:255005/249‑1 (MQ=255) cTTATTTTTGCCGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTaaaagaa < 2:155240/249‑1 (MQ=255) cTTATTTTTGCCGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCACATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCAATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTaaaagaaa < 1:619817/250‑1 (MQ=255) tATTTTTGCCGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTaaaagaaaag > 1:287855/1‑250 (MQ=255) tttttGCCGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGt > 1:63486/1‑249 (MQ=255) ttGCCGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGtcatt > 1:84038/1‑250 (MQ=255) tGCCGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGtcatt < 2:218993/249‑1 (MQ=255) ccGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGAGGATTGAAAACAGCAGCGGTGTAACAGAAAAGtcattcat > 1:202023/1‑250 (MQ=255) tCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTcatcat < 1:441338/250‑1 (MQ=255) aGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTa < 1:495816/250‑1 (MQ=255) cacaAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGc > 1:448597/1‑249 (MQ=255) cacaAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGc < 1:432250/249‑1 (MQ=255) atgaCTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCa < 1:385202/250‑1 (MQ=255) cagaaaaTAAAGTTTTTGATGTTCATTATATTTTTTTTAAT‑CATTGCGGCCGGCGCCCAGGCGGCGGAAGGGATCGAGTTGGGTGCCACGCTTTTTATTAACCCCGCGG‑ATGCTAAACAGACTGCGATAGGGATTAAAAATAGCCATACCAATGAGCGTTTTCTGGTCATTTCGTGGATTAAAAACAGCGGGGGTTAAAAAGAAAAGACATTCATCTTTACACCGCCACTGTTTGTTAGTGAACCCaaaa < 2:325992/247‑1 (MQ=255) aaaaaaaaTTTATGGATG‑TCATTTTTTTTTTATTAATCCATTTGGCCAAGCGCCCGTGCGCCGGGAGGGACCGATTGAGGTGCCCCGTTTTTTTTTTACCCCGCTG‑ATTCTAAACAGAGTGCGGTGTGGATGAAAAATAGCAATCCAAAGGAGCGTTTTCTGGTCATTTCGTGGATTGAAAACGGCAGCGGTGAAAAAAAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCg < 2:128344/250‑1 (MQ=255) aaGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAATCGAAAATa > 2:464661/1‑250 (MQ=255) attgagtcaatatattTTTTATTGACA‑CATGTCGCCCAGCGCCATTGCAGCCGGGGGGACCACAGTGGGTGCCACGAGTATTATTTATCCCACTG‑GGGCAAAACAAACGGCGGTATGGATAAGAAATGGCCAACCAAAAGAGCGTTTTTTGGTAAATTCGTGGATTGAAAACAGCGGCGGTAAAAAAGAAAAGGCGTCAATCTTAACCCCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACttt < 2:424271/237‑1 (MQ=255) cTCATTAGATTTGATTTAAT‑CAGGTCGCGCAGCCCCCGTGCTGCGGGAGGGATCGAATAAGGTGCCGAGGTAATTATTAACCCGGCTG‑ATGTTAAACAGACTGGGGTATGGATTAAAAAGAGCCAAACAAATGAGCGCTTTCTGGTAAATTCGGGGATAAAAAACAGCAGGGGTGAAAAAAAAAAGACATTCATAATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGtatta < 2:150171/250‑1 (MQ=255) tatcTTTTATTTAAT‑CATTTCTTCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAAACGACTGCGGTATGGATTAGAAATAGCCATACCACTGAGCGATTTCTGGTCAATTAGTGGATTGAAAAAAGCCGCGGTGGAAAAGAACAATCATTCATCATTACATCGCCACTGTTTGTTAGAACACCAAAAAGGGAACATCATTTGCGTATTATTTa > 2:112922/1‑249 (MQ=255) tttaAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCTTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATCCCAATGAGCGTTTTCTGGTCAATTCTTGGATTGAAAACAGCAGCGGTGTAAAAAAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTcc < 1:334006/249‑1 (MQ=255) ttaAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCAc > 2:105060/1‑250 (MQ=255) taaaT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTACCCCGCTG‑ATGCTAAACAGACTGCGGTAGGGATTAGAAATAGCCAACCCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCa < 1:221980/247‑1 (MQ=255) aaT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCg > 1:583231/1‑250 (MQ=255) aT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGc > 1:625114/1‑250 (MQ=255) cATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTg > 1:613004/1‑250 (MQ=255) ttCGCCCCGCCCCCATCCTGCCGGAGGGTTCGCATTAGTTGCCCCGCTTTTTTTTTATCCCGCTG‑ATGCTAAACAGCCTGCGGTATGTATTAGAAATAGCCATCCCATTGAGCTCTTTCTGTTCATTTCGTGGATTGAAAACAGCAGCGGTTTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTg < 1:58065/247‑1 (MQ=255) ggCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGgcag > 1:85298/1‑248 (MQ=255) ccATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAg > 2:370114/1‑250 (MQ=255) ccGGAGGGATCGCATTAGGTGCCCCGCGTATTATTTACCCCGCTG‑TTTCTAAACAGACTGCGGTAGGGATTAGAAATAGCCATACCAATGGGCGCTTTCTGGTCAATTCGTGGATTAAAAACAGCAGCGGTGTAAAAGAAAAGTCATCCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGt < 1:463736/249‑1 (MQ=255) aGGGATCGCATTAGGTGCCACGCGTATTTTTTATCCCGCTG‑ATGCAAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTgg < 1:60282/250‑1 (MQ=255) aGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTgg > 2:382522/1‑250 (MQ=255) aGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTg > 1:417722/1‑249 (MQ=255) cGCATTAGGTGCCCCGGTTTTTATTTCCCCCGCTA‑ATGCAAAACGAACTGCGGTATGGATTAAAAATAGCCATGCCAATAAGCGCTTTCTGCTCATTTCGTGGATTGAAAACAGCGGGGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAAt < 1:373413/250‑1 (MQ=255) ttAGGTCCCACGCGTATTATTTACCCCGTGT‑ATGCAAAACAGACGGGGGTATGGATTAGAAATAGCCATACCAAGGAGCGCTTTCTGGTCAATTCGTGGATTAAAAACAGCAGCGGTGTAAAAAAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTa < 1:458753/250‑1 (MQ=255) ttAGGTCCAACGCATATAATTTA‑CCCGGTGAATGCAAAAAAGCCTGCGTTAGGGATAAAAAATAGCCATACCAATGAGCGCTTTCTGGTCATTTCGGGAATTAAAAACAGCGGCGGTGAAAAAAAAAAGTCATCCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTa < 2:222396/250‑1 (MQ=255) ggTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGTGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGa > 1:465856/1‑250 (MQ=255) gggCCAAGGGTATTATGAAGCCCGCGG‑ATGAAAAACAGACTGCGGAATGGATTAAAAATGGCAAAACCAAAGAGGGCTTTCTGGTAAATTCGTGGATGGAAAAAAGCGGGGGTGTAAAAGAAAAGTCATTCATCATTAAACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGAc < 1:220152/248‑1 (MQ=255) gTGCCACTTGTATTAATAACCCTGAGG‑AAGATAAAAGGACTGTGGAAAGGATTAGAAGAAGCCATAAGAATGGTCGCTTTCTGGTCAGATAGTGGATTGAAAACAGCAGAGGTGTAAAAAAAAAATCATTCATAATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGAc < 2:589886/250‑1 (MQ=255) ccACGCTTATTATTTACCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAAGGAGCGCTTTCTGGTCAATTCGTGGATTAAAAACAGCAGCGGTGAAAAAGAAAAGTCATTCACCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGAt < 1:651952/250‑1 (MQ=255) cgcgTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATccc > 2:349529/1‑250 (MQ=255) cgTATTATTTATCCCGCTG‑ATCCAAAACAGCCTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTAATTTCGTGAATTAAAAACAGCAGCGGTGTAAAAGAAAAGTCTTTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCtt < 1:116206/250‑1 (MQ=255) ttttatCCCGTTG‑GTGAAAAACAGTTTGGGGTTGGAATAAAAAATAGCCATCCCAGTGGGCGTTTTCTGGTAATTTGGTGGATTAAAAACAGCAGCGGTGAAAAAAAAAAGTAATTCATAATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTa < 2:639506/248‑1 (MQ=255) cGCTG‑ATGCTAAAAAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGGGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGGGAGTCTCTGTTCTGGATGAATGTTAAGAAGATCCCTTCGGTAGATAAAAAt > 1:472155/1‑250 (MQ=255) cTG‑ATGCTAAACAGACTGCGGTAGGGATTAAAAATAGCAATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTAAAAACAGCAGCGGTGAAAAAAAAAAGTCATTCATCATTCCACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGc < 1:600742/250‑1 (MQ=255) atAAACAGACGGGGTTATGGATAAGAAATAGCAATACAAATGAGCGTTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGAAAAAAAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGaa < 1:359866/249‑1 (MQ=255) cAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACgg > 1:14386/1‑248 (MQ=255) tttGGATAAAAAATAGCCATACCAAGGAGCTTTTTCTGGTCAATTCGTGGATTAAAAACAGCAGCGGTAAAAAAAAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGtttt < 2:303876/248‑1 (MQ=255) ttAAAAATAGCAATCCAAAGGAGCGCTTTCTGGTCAATTCGTGAATTAAAAACAGCAGGGGTGAAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACt < 2:568294/250‑1 (MQ=255) taaaaaaAGCCATCCAAAGGAGCGTTTTTTGGTAAATTCGTGGATTAAAAACAGCGGCGGTGAAAAAAAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTg < 2:605314/247‑1 (MQ=255) aaaaaaacccATACCAATGAGCGCTTTCTGTTCAATTGTTGGATTAAAAACAGCAGGGGTGAAAAAAAAAATTCATTCATCTTTCCACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTg < 2:66624/241‑1 (MQ=255) aaTAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGa > 1:415314/1‑250 (MQ=255) atacataTGAGCTTTTTCTGTTAAATGCGGAGTTTAAAAACAGAAGGGGTGAAAAAAAAAAGTCATTCATCATAACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATc < 2:240982/244‑1 (MQ=255) aGCGTTTTCGGGTAAATTCGTGAATAAAAAACAGCAGGGGTGAAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGaa < 1:442730/250‑1 (MQ=255) aGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCCACCGGCGATTTTATCGCGCATGa > 2:291067/1‑249 (MQ=255) gcTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGAAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAat > 2:110634/1‑249 (MQ=255) tcgggTAAATCCGTGAATGAAAAACAGCAGGGTTAAAAAAGAAAATTCTTTCACCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAattatt < 2:398946/246‑1 (MQ=255) cttGGTCAATTCGTGAATTAAAAACAGAAGCGGTATAAAAAAAAATTCATTCATCATTACGCCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAattatt < 1:452631/247‑1 (MQ=255) ggTAAATTAGTGGTTTAAAACCAGCGGCGGTATAAAAAAAAATTCATTAATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAATTATTtct < 2:262984/249‑1 (MQ=255) gtaatttCGTATATTAAAAACGCCTGCGGTGAAAAAAAAAAGTTATCCATCTTTCCGCCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAATTATTtct < 2:311760/243‑1 (MQ=255) aTTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAATTATTTCTCCGTc > 1:551189/1‑249 (MQ=255) gTGGATTAAAAACAGCAGCGGTGAAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAATTATTTCTCCGTCcaat < 1:162128/249‑1 (MQ=255) cggcgggggTGAAAAAAAAAAGCCATTCATCATTCCACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAGCGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAATTATTTCTCCGTCCAATTCAATTACAAGaa < 1:17456/243‑1 (MQ=255) gcagcGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAATTATTTCTCCGTCCAATTCAATTACAAGAAtt < 1:382522/250‑1 (MQ=255) gtgtAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAATTATTTCTCCGTCCAATTCAATTACAAGAATTACCCg > 1:624893/1‑249 (MQ=255) tAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAATTATTTCTCCGTCCAATTCAATTACAAGAATTACCCGCAg > 1:297496/1‑249 (MQ=255) | TCCTTATTTTTGCCGTCAGGAATACACAAGGCGTATTAACTATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAAT‑CATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTG‑ATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTTGTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTTCTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTATCGCGCATGAAATTATTTCTCCGTCCAATTCAATTACAAGAATTACCCGCAG > NZ_CP009273/554389‑554880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |