| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,852,805 | 0 | T | G | 51.0% | 48.9 / 78.4 | 51 | V785G (GTT→GGT) | mutS | DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): ref base T (9/16); new base G (26/0); total (35/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.85e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.27e-08 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTCTGTCGCTGGCGTGGGCGTGCGCGGAAAATCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAAC > NZ_CP009273/2852562‑2853053 | gTCTGTCGCTGTCGTTGGCGTGCGCGGAAAATCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCGTCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGttatta < 1:417422/249‑1 (MQ=255) gTCGCTGGCGTGGGCGTGCGCGGAAAATCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCCCTGGCAGGC‑GGGCCCAAAGAGGGTATTAAacgc > 1:108813/1‑250 (MQ=255) gcgtgggcgtgCGCGGAAAATCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCTGCTCTGGCCGGG‑GTGCCAAAAGAGGTGTTTAAGCGCGCGCGGc > 2:48349/1‑250 (MQ=255) gggcgtgCGCGGAAAATCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCGAAAGAGGGTATTAAACGCGCAAGGCaa > 1:103629/1‑248 (MQ=255) cgcgGAAAATCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTTGCGCCCTGGGCGGCGGGGCCAAAAAGGGTAATTAAGCGCCCCGGGCAAAACTTGCg > 2:194070/1‑250 (MQ=255) cgGAAAATCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGTCGCTCTGGCCGGC‑GGGCCACAAGAGGGTATTAAAGTGGCACGGCACAAACGGCGTgt > 2:224202/1‑249 (MQ=255) gAAAATCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGG‑GGGCCAAAAGAGGGTATTAAGCGCGCACGGCAAAAGCCGCGTGacg > 2:224692/1‑248 (MQ=255) aaaaTCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGG‑GCGCCAAAAGAGGGTATTAAACGCGCACGGCGAAAGACGCGTggggt > 1:376160/1‑246 (MQ=255) aaaTCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTg < 1:521636/250‑1 (MQ=255) cGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGGTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGGAAGCAt > 1:168011/1‑250 (MQ=255) gAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGGTATTAAACGCGCACGGCCAAAACTGCGTGAGCTGGAAAGCAtt > 1:303491/1‑250 (MQ=255) aTAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGGCAAAAGAGGGTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTc > 1:190447/1‑250 (MQ=255) gATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTTCAGCCCCTGCAGGG‑GGGCCAAAAAAAGGTATTAAGCGGCCACGGCCAAAGGCGGGGGAGCGGGAAAGCAATTT‑GCCg > 2:301886/1‑250 (MQ=255) gATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCg < 2:132132/250‑1 (MQ=255) gATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GCGCCAAAAGAGGGTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGAATTTC‑Gcc > 1:214049/1‑249 (MQ=255) cATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGGCCTGGCAGGC‑GGGCCCAAAGAGGGTATTAAGCGCGCACGGCCAAAGCTGCGTGAGCTGGAAAACATTTT‑GCCGAAccacgc > 2:138916/1‑245 (MQ=255) tttGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCaa < 2:161148/249‑1 (MQ=255) cTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGGGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCCACGCAAggg > 1:41736/1‑246 (MQ=255) tACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGGAGGG‑GGGCCAAAAGAGGGTATTTAGCGCGCACGGGCAAAGCCGCGGGAGCTGGAAAGCATTTT‑GCCGGACGCCCCCGCTACGCAAgggggg > 2:71078/1‑248 (MQ=255) ccACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGGCCAAAGAGGGTATTAAGCGCGCACGGCAAAAGCTGCGGGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGGGGGTgg > 1:106561/1‑249 (MQ=255) tATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGGAGGC‑GTGCCAAAAAAGGGTATTAAACGCGCACGGCAAAAGCTGCGGGAGCTGGGAAGCATTTC‑GCCGAACGCCCCCGCTACGCAAGTGGATGGTACg > 1:580141/1‑249 (MQ=255) tATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCCCCGGGAGGC‑GGGCCAAAAAAGGGTATTAAAGGCGCACGGCAAAAACCGCGGGAGGTGGAAAGCATTTT‑CCCGAACGCCGCCGCCACGCAAgggggagggaag > 1:79760/1‑241 (MQ=255) tttCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCaa < 1:428110/250‑1 (MQ=255) aCCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCttt < 1:158323/248‑1 (MQ=255) cccAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCt < 1:77348/250‑1 (MQ=255) gagaAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GGGCCCAAAGAGGGTATTAAGCGCGCACGGCAAAAGCTGCGGGAGCTGGGAAGCATTTC‑GCCGGACGCCGCCGCTCCGCAAGTGGGTGGGACGCAAAAGGCTTTGCTGTCAGTAc > 2:196135/1‑247 (MQ=255) aaGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGGGGGTCTGGCAGGG‑GGGCCAAAAGGGGGTATTAAGCGCGCACGGGCAAAGCTGCGGGAGCTGGGAAGGGTTTCTGCCG‑ACGCCGCCGCCACGCCAGGGGGTGGGAGGGCAACGGCTTTGCTGTCAGTACCAGAA‑GGAAATTc > 2:253958/1‑250 (MQ=255) cGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGGTGCAGCCCTGGCAGGC‑GGGCCCAAAGAGGTTATTAAGCGCCCACCGCCAAAGCTGCGGGAGCTGGAAAGCATTTT‑GCCGGACGCCGCCGCCACGCAAGTGGGATGTACGCCAATGTCTTTTCTGTCAGTACCCGCA‑AAAACTTCGCCt > 2:157314/1‑250 (MQ=255) tCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGGTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGGGGGTGGGAAGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAAATTCGCCCGc > 1:458213/1‑250 (MQ=255) gcgaacgggattctcGATGCACTGGGGCACGACGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCgg < 2:277427/239‑1 (MQ=255) cGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGaa < 1:239293/250‑1 (MQ=255) gTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGGTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTAAGCAAATGTCTTTGCTGTCAGGACCAGAA‑GAAACTTCGCCTGCGGTCGAAg > 1:137913/1‑250 (MQ=255) tGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCCGCTCTGGCAGGC‑GTGCCAAAAGAGGGTATTAAGCGCGCACGGCAAAAGATGCGTGAGCTGGAAAGCATTTT‑GCCGAACGCCCCCCCTACGCCAGTGGGGGGGACGCAAAAGTCTTTTCTGTCAGTAACAGAA‑AAAACTTCCCCCGCGGGCGAAGc > 2:466082/1‑250 (MQ=255) tGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGGTATTAAGCGCGCACGGCAAAAGCTGCGGGAGCTGGGAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGGTGGGACGCAAATGGCTTTGCTGTCCGGACCAGAA‑GAAAATTCGCCTGCGGTCGAAGc > 1:282708/1‑250 (MQ=255) aTGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGaaaa < 1:71078/250‑1 (MQ=255) gAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGa < 1:427706/248‑1 (MQ=255) gACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GGGCCAAAAGAGGGTATTAAGCGCGCACGGCCAAAGCTGCGGGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCCACGCAAGTGGATGGGAAGCCAATGTCTTTGCTGTCAGTACCCGAA‑GAAACTTCGCCGGCGGGCGGAGCTCTGGGAAATCTTTATCCGGATtcac > 2:229660/1‑250 (MQ=255) cacCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GCGCCAAAAGAGGGTATTAAGCGCGCACGGCCAAAGCTGCGTGAGCTGGGAAGCATTTC‑TCCGGACGCCCCCCCCACGCAAGCGGGTGGGACGCAAATGTCTTTTCTGTCCGTACCCGAA‑AAAACCTTGCCCGCGGTCCAAGCTCTGGGAAAACTTTATCCGGGTtcactc > 2:11537/1‑250 (MQ=255) tGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCCGGC‑GTGCCCAAAGAGGGTATTAAGCGCGCACGGCAAAAGCTGCGTGGGCCGGAAAGCATTTT‑GCCGAAAGCCGCCGCCACGCCAGTGGGTGGGACGCAAATTGTTTTGCTGTTCGTACCAGCA‑GAAACTTTGCCCGCGGTCGAAGCCCTGGAAAATCTTGATCAGGATTCAATccccccc > 2:548490/1‑249 (MQ=255) ccTTTAGGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCcgc < 2:460069/249‑1 (MQ=255) cGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCCGGCAGGC‑GGGCCCAAAAAGGGTATTTAGCGCGCACCGCCAAAGCTGCGTGAGCTGGGAAGCATTTC‑GCCGGACGCCGCCGCCCCGCGAATGGATGGTAAGCAAAAGTCTTTTGTGGCAGTACCAGCA‑GAAACCTCTCCCGCGGTCGTAGATCTGGTAAATCTTGTTTCGGGTTCACTCACCCCCCGTCCGgctgcgggt > 2:189981/1‑243 (MQ=255) gCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTgg > 1:135010/1‑250 (MQ=255) gATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTTGCAGGC‑GGGCCCAAAGAGGGTATTAAACGCGCCCGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGGAAGCCGCCGCCAACCCAGTGGGTGGGAAGCCAATGTCTTTTCTGTCAGTACCAGAAGGAAACTCCGCTGGGGGTGGAAGCCTTGGAAATTTTTATTCCGGATTCAC‑CACCCCCCCGCAGGCGCCGGatggggttt > 2:276536/1‑242 (MQ=255) cgcgGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGc < 1:258468/250‑1 (MQ=255) gcggcgAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCt < 2:621321/250‑1 (MQ=255) gCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAagag > 1:203303/1‑250 (MQ=255) cGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGta < 2:203303/249‑1 (MQ=255) gCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACaa < 1:196135/249‑1 (MQ=255) c‑GTGCCAAAAGAGGTTGTTAAGCGCGCACGGCAAAAGCTGCGTGGGCTGGAAAGATTTTC‑GCCGAGCGCCGCGGCTACGCAAGTGGATGGTACGCAAATGTCTTTGTTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTAt < 2:425728/250‑1 (MQ=255) gTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATc > 1:594809/1‑250 (MQ=255) gCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCgg > 1:118117/1‑250 (MQ=255) gTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAAc > 1:186328/1‑250 (MQ=255) | GTCTGTCGCTGGCGTGGGCGTGCGCGGAAAATCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACCATTGCCTTTATGCACAGCGTGCAGGATGGCGCGGCGAGCAAAAGCTACGGCCTGGCGGTTGCAGCTCTGGCAGGC‑GTGCCAAAAGAGGTTATTAAGCGCGCACGGCAAAAGCTGCGTGAGCTGGAAAGCATTTC‑GCCGAACGCCGCCGCTACGCAAGTGGATGGTACGCAAATGTCTTTGCTGTCAGTACCAGAA‑GAAACTTCGCCTGCGGTCGAAGCTCTGGAAAATCTTGATCCGGATTCACTCACCCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTATCGGGAATATTAAC > NZ_CP009273/2852562‑2853053 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |