| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,333,713 | 0 | A | G | 32.6% | 81.6 / 11.7 | 50 | G176G (GGA→GGG) | melB | melibiose:sodium transporter MelB |
| Reads supporting (aligned to +/- strand): ref base A (3/30); new base G (16/0); total (20/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.89e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTAGTGCGCATCTGTTTGAAGGTACTACTCAGATTGTCTTTGTTTGCGTGACCTACATCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGTAGCCAGCAACATTATTACCGGCTTTGCTATCTATTATTTCTC > NZ_CP009273/4333469‑4333961 | ttAGTGCGCATCTGTTTGAAGGTACTACTCAGATTGTCTTTGTTTGCGTGACCTACATCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑CGGGGTTTgg > 1:435710/1‑250 (MQ=255) cgcATCTGTTTGAAGGTACTACTCAGATTGTCTTTGTTTGCGTGACCTACATCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTc < 2:327000/249‑1 (MQ=255) tttGAAGGTACTACTCAGATTGTCTTTGTTTGCGTGACCTACATCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGGGGGGGTC‑GGGGGTTTGGG‑CTTTATATGTTcc > 1:274306/1‑249 (MQ=255) tttGAAAGTACTCATCAGATTGTCTTTGTTTGCGTGACCTACATCCTCTGGGGCATGACTTACACCATGGTGGAGATTCCCTTCGGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTGTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCa < 2:317634/250‑1 (MQ=255) ctactCAGATTGTCTTTGTTTGCGTGACCTACATCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGAGGTC‑GGGGGTTTTGCGTTTCA‑ATTTTTACTCTGGGACt > 1:202426/1‑250 (MQ=255) cTTTGTTTGCGTGACCTACATCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCCTTTGTTAATTATGTCGGCGGTGGGGAGC‑GGGGGTTTGGC‑TTTTACATGTTTCCTCTGGGACTGATTGCCtttttt > 1:255369/1‑250 (MQ=255) tgtttgCGTGACCTACATCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCtttttt < 1:118210/247‑1 (MQ=255) gttgCGTGACCTACATCCTCTGGGGCAGTGCTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAGCCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTTCCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTg < 2:375329/248‑1 (MQ=255) gCGTGACCTACATCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGttt < 2:406969/249‑1 (MQ=255) gTGACCTACATCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGGGGTC‑GGGGGTTTTGG‑TTTTTGATGTTTACTCTGGGACTGGTCGCCTtttttttttttttt > 1:284433/1‑247 (MQ=255) aCCTACATCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGGGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACca < 2:215199/250‑1 (MQ=255) aTCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTTTTAATTATGTCGGCGGTGGCGGTC‑GGGGGGTTGGC‑TTTTTGATGTTCCCTCTGGTTTCGCTTGCCCTTTTTATTGTTTTTACCCtcatca > 1:148087/1‑250 (MQ=255) ccTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGGGGTGGGGGTCGGGGGTTTTGGT‑TTTCAAAGGTT‑ACTTCGGGTGTGGTAGCCCTTTTTTTTTTTTTAACCATTATCAct > 1:140876/1‑250 (MQ=255) ctctGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGAAGCTACCCTTTTTTAATTTTGTCGGCGGTGGGGGTC‑GGGGGTTTGTC‑TTTTTGATTTTTACTCTGGGACTGGTTGGCCTTTTTTTTGTTTGAAcccttcttctcc > 1:81351/1‑240 (MQ=255) tGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAAtgt < 1:221516/250‑1 (MQ=255) cTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGGGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGGTC‑GGGGGTTTTGG‑TTTTAGATTTTTACTCTGGTACTTGTTGCCCTTTTTTTTTTTTCAACCATCATCACTC‑TTCGCCATTT‑GCa > 1:502084/1‑250 (MQ=255) ttACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGGGGGGATC‑GGGGGTTTGGC‑TTTCAGATGGTTACTATGGGAATGTTAGCCTTTTTTTTTGTTTCTAACATCATCACCC‑TGCGCCATGT‑Gcct > 1:543141/1‑248 (MQ=255) acacCATTATGGATATTCCCTTCTGGTCGCTTGTTCCAACCAGCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATg < 2:424522/249‑1 (MQ=255) acacCATTAGGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATg < 2:280501/249‑1 (MQ=255) ttATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGGGGGT‑GGGGGTTTTGG‑TTTTTCATTTTTACTCTGGTTCTGATCGCCCTTTTTTTTTTTTTTATCATCATCACCCTTACCCAATG‑‑GCATGAAGTCtt > 2:281600/1‑250 (MQ=255) ttATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCtt < 2:331194/250‑1 (MQ=255) gATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGt < 2:463606/250‑1 (MQ=255) ccTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACa < 1:616062/249‑1 (MQ=255) cTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGGGGGGGTC‑GGGGGTTTTGC‑TTTTAGATGTTTACTCTGGTACTGTTCGCCCTTTTTTTTGTTTTAAACCTCATTCCTC‑TTCGCAAAGTGGCTTGAGGTTTTTTctctggaaatcaa > 1:82442/1‑238 (MQ=255) cATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGGTTTGGC‑TTTTAGATGTTCACTCTGGTACTGATCGCCTTTTTTTTTGTTTTAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑Tgaaggaagg > 1:425859/1‑249 (MQ=255) tAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACtt < 1:607114/250‑1 (MQ=255) tAAACGTCAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACtt < 2:275421/250‑1 (MQ=255) aCGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTaaa < 1:51328/250‑1 (MQ=255) aacTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCt < 1:276051/250‑1 (MQ=255) gTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAAttt < 1:356019/250‑1 (MQ=255) gTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAAt < 2:165035/248‑1 (MQ=255) tATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGGGGGGGGCGGGGGGTTTGGG‑TTT‑AGATGTTTACTCTTGGACTGGTCGGCTTTTTTTTTTTTTTAAACATCAATACTC‑TGCGCAAAGT‑GCATGGAATCTTTTTGTCAGACAAAAAAACCTCTGC‑TGAAGGGAGCCATCTGACACTTTAAACACACGTTTCGCTAAATTATaaa > 2:245861/1‑249 (MQ=255) tttttGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGc < 2:485816/249‑1 (MQ=255) ccAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGGTTTGGG‑TTTTAGATGTTCACTCTGGGACTGATCGCCTTTTTTATTGTTTTAACCATCATCACTC‑TGCGCAATTT‑GCATGAAGTCTTTTTGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTTTAAAAACGATCAGCTTTTATg > 1:112948/1‑250 (MQ=255) aGTCTGGCAGGCTTTGTTACGGCAGGGGTGACGCTACCATTTGTTAATTATGTCGGCGGGGGGGGTT‑GGGGGTTTTGG‑TTTTCGGTGTTTCCTCTTGGACTGGTTTCCCTTTTTTTTTTTTTAACCCTCATTACTC‑TTCGCCATAT‑GCATGAAGTTTTTTTGTTAGACAAACCACCCGCTGCTTGAAGAAAG‑CATCTGACACTTAAAAACATCGTTTCGCTCATTTTTAAAAACTATCAACttttaatcc > 2:591045/1‑244 (MQ=255) cTGGCAGGCTTTGTTACGGCAGGGGTGACGCTACCATTTGTTAATTATGTCGGCGGGGGCGGTC‑GGGGGGTTGGG‑TTTTAGATGTTTACTCTGGTGCTGGTTGCCCTTTTTTTTGTTTTAACCATCATTACCC‑TGCGCCAATT‑GCATGAAGTCTTTTTGTCAGACAAACAACCGTCTGC‑TGTAGGAAACCATCTGACACTCAAAGCCATCGTTTTGCTCATTTTTAAAAAAGCTAACCTTTCATACctct > 2:109765/1‑250 (MQ=255) aCGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCACTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCtt < 2:214450/249‑1 (MQ=255) ggCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCCTGCCTCTTGGGTATGGCTCTTGCt > 2:505083/1‑250 (MQ=255) ggCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCt < 1:320608/250‑1 (MQ=255) tgACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGt < 2:179599/250‑1 (MQ=255) aTTTGTTAATTATGTCGGCGGTGGCGATC‑GTGGATTTGGC‑TTTCGGATGTTCACTCTGGTACTGATCGGCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGTAGCCAGCAAc < 2:318127/250‑1 (MQ=255) tGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGTAGCCAGCAACat < 2:284048/249‑1 (MQ=255) ttAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGTAGCCAGCAACatta < 2:355188/249‑1 (MQ=255) ttATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGTAGCCAGCAACATTATTAcc < 1:206113/250‑1 (MQ=255) tGTCGGCGTTGGCGATT‑GGGGATTTGGC‑TTATAGATGTTCACTCTGGTACTGATCGCCTTTTTTAATGTTTCAACCAACATCACTC‑TGCGCAATGT‑GCATCAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGTAGCCAGCAACATTATTACCGGc < 2:278108/250‑1 (MQ=255) tCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATTGAACCAGCAACATTATTACCgggct > 2:257209/1‑247 (MQ=255) ggcggTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGTAGCCAGCAACATTATTACCGGCttt < 1:111345/249‑1 (MQ=255) gTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGTAGCCAGCAACATTATTACCGGCTTTGctat < 1:160978/250‑1 (MQ=255) aTC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGTAGCCAGCAACATTATTACCGGCTTTGCTATCtatta > 1:237731/1‑250 (MQ=255) gATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGTAGCCAGCAACATTATTACCGGCTTTGCTATCTATTATTtctc < 1:101209/250‑1 (MQ=255) | TTAGTGCGCATCTGTTTGAAGGTACTACTCAGATTGTCTTTGTTTGCGTGACCTACATCCTCTGGGGCATGACTTACACCATTATGGATATTCCCTTCTGGTCGCTGGTTCCAACCATCACGCTCGATAAACGTGAGCGCGAACAACTGGTTCCTTATCCGCGTTTTTTTGCCAGTCTGGCAGGCTTTGTTACGGCAGGTGTGACGCTACCATTTGTTAATTATGTCGGCGGTGGCGATC‑GGGGATTTGGC‑TTTCAGATGTTCACTCTGGTACTGATCGCCTTTTTTATTGTTTCAACCATCATCACTC‑TGCGCAATGT‑GCATGAAGTCTTTTCGTCAGACAATCAACCGTCTGC‑TGAAGGAAGCCATCTGACACTTAAAGCCATCGTTGCGCTAATTTATAAAAACGATCAGCTTTCATGCCTCTTGGGTATGGCTCTTGCTTATAATGTAGCCAGCAACATTATTACCGGCTTTGCTATCTATTATTTCTC > NZ_CP009273/4333469‑4333961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |