| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,570,447 | 0 | A | T | 34.8% | 82.5 / 18.1 | 46 | L278Q (CTA→CAA) | hsdS | type I restriction‑modification system specificity subunit |
| Reads supporting (aligned to +/- strand): ref base A (6/24); new base T (16/0); total (22/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.53e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAAATACCTTTTTGACCAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCTTGAC > NZ_CP009273/4570198‑4570690 | gAAATACCTTTTTGACCAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTa > 1:320047/1‑250 (MQ=255) tttttGACCAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑ATTTGTTTACtt > 1:599749/1‑250 (MQ=255) ttttGACCAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑GTTTGTTCACttt > 2:399511/1‑250 (MQ=255) tttGACCAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCAAtt < 1:119498/248‑1 (MQ=255) tGACCAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCtt > 2:42245/1‑249 (MQ=255) aaGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTTCTTTTTGAACAttt > 1:282242/1‑249 (MQ=255) ttCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAAc < 1:379725/249‑1 (MQ=255) gTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCg < 2:186838/250‑1 (MQ=255) tcatTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTATTTCA‑TTTTTTCACATTTTTGAAACAGAataacaatttg > 1:96342/1‑242 (MQ=255) aTTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTATTCACTTTTTGTAAAATTTATAAAACGAATAACGtttttttttaca > 1:1257/1‑242 (MQ=255) aaaaaaaTATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACt < 2:172912/250‑1 (MQ=255) aaaaTATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGTGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAAt > 1:243263/1‑250 (MQ=255) aaaaTATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTTATTTTTTAACATTCTTTCAAACACAAATTGTTTTTTTTT‑ACATGT‑CCAGCACTCCCAGAACaaa > 2:291462/1‑249 (MQ=255) atatTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCg < 1:290579/250‑1 (MQ=255) gATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTTACTTTTTTAAAATTTTAGAAAACCAAAATCGGTTTTATCT‑TCATGGCCCACCAC‑TACAGAACTAATGCGTAGTAtt > 1:575185/1‑250 (MQ=255) ggTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑ATTAGTTTACTTTTTTAAAATTTTCTAAACCGCATATTGTTTTTTTCT‑ACATGG‑TCCGCACGTGCAGAACTCATGCGTAATATTGAATgcatc > 2:182812/1‑245 (MQ=255) tGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTCTGAAAAATCTATAAACCGAAAATTGTTTTTATTT‑TAATTG‑CCAAGAAGAACAAAACTACAGCGTAGGATTTGATGA‑GCCAAAC‑CACATTTAtt > 1:237991/1‑250 (MQ=255) gAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTtga < 2:300759/250‑1 (MQ=255) tCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTTACTTTTTTTACATTTTTGAAAACGCAAATCGTTTTTATTT‑ACATTG‑CCAGCACGTACAAAAATAAAGAGGAGTATTTGGTGA‑ACAACAC‑CAACTTTATTTTGCttttttga > 1:505622/1‑244 (MQ=255) tAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑Acc < 2:494100/250‑1 (MQ=255) tAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑CTTTGTTCTCCTTCTTAAAACTCTAGAAAACCCAAATAGCTTTTTTCTAAAATGG‑CCA‑AACCCACAGAAACAAAATGTAGGATTGGGTGT‑CCAAAAA‑CACCTTCAATTTGCTTTTATGaaaaaa > 1:447719/1‑246 (MQ=255) aTCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGaaa < 1:535044/239‑1 (MQ=255) atatAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑CTTTGTTTACTTTTTTAAAATTCTAGAAAAAGAAAATCTTTTTTTTAT‑TAATGT‑CCCACACGAACAAAAACAATACGAATAATTTGTTTA‑ACAACACACACTTCAATTTGTC‑TTGATGAAAA‑ACCAATACAGAAttt > 2:521199/1‑248 (MQ=255) aGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTTTTAACATTTTTTATAACGAATAATGTTTTTTTTT‑TCATTT‑CCCGCCCCTTCAGAAAAAATACTGAGTATTGTATGG‑TCCACAC‑CCACTTCATTTTGCTTTTTTGAAAG‑AAAATTACTTAATTCCGtt > 2:210394/1‑249 (MQ=255) ttgtAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCaaa < 2:54201/249‑1 (MQ=255) ttgtAATTATTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCaaa < 2:62689/249‑1 (MQ=255) tgtAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTCACTTTTTGAACATTTTAGAAAACGAATAACGTTTTTATCT‑TCATTG‑CCCGCACGTACAAAAATAATACGGAGGATTTGAAGA‑ACAACAC‑CACCTTCATTTTGCTTTGATGAAAGAACAATTAAG‑AAATCAATTAAA‑AAAGATTCaaaaa > 1:204469/1‑249 (MQ=255) gtAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTTTTTAAAATTTAGAAAACGAAAATTGTTTTTATTT‑ACATGG‑CCCACACGGACAAAAAAAAAACGTGATATTTGGTTA‑ACAACAA‑CACATTTCTTTTGCTTTTTTTAAAG‑ACCAATAAGTAAATTAATTAAG‑ATAAATTTaaaaat > 1:258337/1‑248 (MQ=255) aaTTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTATTTCACTTTTTTAACATTTTAAAAAACGAATATCGTTTTTATCT‑TCATTG‑GCAGCACGTACAAAACTAATGCGTAGTATTTGATGA‑CCAACAC‑CACTTTCATTTTGCTTTTATGAAAA‑ACCATTAAGTAAATTAGTTAAA‑ATAGATTTAAAAatt > 1:266192/1‑249 (MQ=255) cacaAACACCAACAAATTCTAAACTTCCGTTATAGCGATTAAATAAAAGATCTCCATCTTGTAAGTTGTGGCGG‑TTTAGTTCGCTTTCTGAACAGTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCGTAAATACAGa < 1:458620/250‑1 (MQ=255) acaAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGaa < 2:246092/250‑1 (MQ=255) cacCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTg < 2:517188/250‑1 (MQ=255) ccAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCg < 2:321826/250‑1 (MQ=255) ccAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCg < 1:507761/250‑1 (MQ=255) ttCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCaaaa < 1:242953/250‑1 (MQ=255) aaCTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCTG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACg < 1:447075/250‑1 (MQ=255) gTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCAtttt < 1:477611/250‑1 (MQ=255) ttATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCAttttt < 1:291462/250‑1 (MQ=255) taGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCt < 2:599749/249‑1 (MQ=255) aGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTTACTTTTTTAAAATTTTTTAAACCCAATATTGTTTTTTTTT‑TCTTGG‑CCCGCCCGTACAAAACTAAATCGTAATATTTGATTG‑CCAAAAC‑CACCTTCCTTTTGCTTTTTTTAAAA‑ACCATTTACTAATTTTATTAAA‑ATAGATTTAAAATTTTACTTTTTTAATACAAAATGTTGTGGCTCCAAATTACACCAttttttttt > 2:261025/1‑246 (MQ=255) aGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑CTTTGATTATTTTTTATACAATCTAGAAACCCAAAAATGTTTTTTTTT‑TAATAG‑CCACAACGTACAGAAATAATAAGTCGTTATGGGTGAGCCACAAC‑CCTTTTCTTTTGTTTTTATTGAAGA‑ACCTTAATTTAATTTA‑TTTAG‑ATAGAATCCAAATTTTACTTTTTTTATACAGAATGTTTATGCCCAAAATTAGATCATTTTTCttt > 1:5146/1‑248 (MQ=255) taaataaaAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAAttt < 2:434940/250‑1 (MQ=255) taaataaaAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAAttt < 2:265947/250‑1 (MQ=255) taaaAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTTACTTTTTTTAAATTTTTTAAAACCAATAACGTTTTTTTTT‑TCATTG‑CCCGCACCGACAGAAATAAATCGTAGTAATTGTTGA‑CCAACAC‑CACCTTCTTTTTGCTTTTTTTGAAA‑AACAATACTGTATTTAGTTAAGAAAAAATTAAAAATTTAA‑TTCTTTAATAAAAAAAGTTTGGGGCCAAAATTACTTCCTTTTTTTTTCTATTTTTCa > 2:321848/1‑250 (MQ=255) aaaGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCAtt < 1:112482/250‑1 (MQ=255) gATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAAc < 1:42245/250‑1 (MQ=255) gg‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCTTGAc > 2:365648/1‑249 (MQ=255) | GAAATACCTTTTTGACCAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCT‑ACATGG‑CCAGCACGTACAGAACTAATGCGTAGTATTGGATGA‑CCAACAC‑CACTTTCATTTGGCTTTGATGAAAG‑ACCATTACGTAATTCAGTTAAG‑ATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCTTGAC > NZ_CP009273/4570198‑4570690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |