New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	3416618 =	71 (0.800)	5 (0.150) +GAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGG	4/192	6.6	15.7%	intergenic (+65/+166)	yhdZ/rrf	amino acid ABC transporter ATP‑binding protein/5S ribosomal RNA
	?	NZ_CP009273	= 3416648	68 (0.770)					intergenic (+95/+136)	yhdZ/rrf	amino acid ABC transporter ATP‑binding protein/5S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACACATGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCG  >  NZ_CP009273/3416403‑3416894                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                           aaCACATGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGG‑CCCGcccccccccc                                                                                                                                                                                                                                                        >  1:541472/1‑250 (MQ=255)  acacATGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCt                                                                                                                                                                                                                                                       <  2:634999/250‑1 (MQ=255)     caTGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCATGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCg                                                                                                                                                                                                                                                    <  1:33155/250‑1 (MQ=255)       tGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGG‑CCTTCCCGCccccccccccc                                                                                                                                                                                                                                                  >  2:786510/1‑247 (MQ=255)        gagaTGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTGCCCCCCCCCCCCCCCCCggg                                                                                                                                                                                                                                                  >  1:381071/1‑250 (MQ=255)                  ttGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAAGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGT‑CCTGCCCCCCCCCCCCCCCGCCCGTGCTT‑Cg                                                                                                                                                                                                                                      >  1:784262/1‑250 (MQ=255)                             gTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTTCCCCCCCCCCCCCCGGCCGTTGCTT‑CTCCACG‑tttac                                                                                                                                                                                                                           >  1:570044/1‑246 (MQ=255)                                gCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGG‑GCTGCCCCCCCCCCCCCCGGGCGGTTCTT‑TCCAACG‑TTCCAAtac                                                                                                                                                                                                                       >  1:293213/1‑248 (MQ=255)                                 cTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCg                                                                                                                                                                                                                      <  1:488908/250‑1 (MQ=255)                                 cTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCg                                                                                                                                                                                                                      <  1:280438/250‑1 (MQ=255)                                   gACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGG‑CCCGCCCCCCCCCCCCCCCGCCGTTGCTTCCGCACCG‑TCCaatcccct                                                                                                                                                                                                                     >  2:692746/1‑244 (MQ=255)                                    aCCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGG‑GCTGCCCGCCCCCCCCCCCGCCGGCGCCT‑TGCAGCG‑GTCaaacaacccc                                                                                                                                                                                                                   >  2:622620/1‑243 (MQ=255)                                          tAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCTCCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑CTCAAATCCGCTCCcggcg                                                                                                                                                                                                             <  1:798112/250‑1 (MQ=255)                                          tAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTCCCCTCCCCCCTCCGCGCCGTTTCCT‑CGCAACG‑TTTACATCCCCTCCccgcg                                                                                                                                                                                                             >  1:712111/1‑250 (MQ=255)                                                ttATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGT‑CCTGCCCGCCCCCCCCCCGGCCGTTGCTT‑CGCCACG‑TTCCAATACGCTCCCGGCGGGTTTg                                                                                                                                                                                                       >  1:224023/1‑250 (MQ=255)                                                     gATCGTGGGGAAATAGTGGAGCAAGCTGCTCCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCt                                                                                                                                                                                                   <  1:767769/249‑1 (MQ=255)                                                         ggggggAAATAGTGGAGCAAGATGCACGTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACAAGGGCATTTTTATCGCAGGTAATCAATTAATTGACTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCCCCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCg                                                                                                                                                                                              <  2:202446/248‑1 (MQ=255)                                                         gTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGG‑CCTGCCCGCCCCCCCCCCGGCCGTTGCTT‑CTCAACG‑CTCAAATCCCCTCCCCGCGGGCTTGTCCTAcacc                                                                                                                                                                                              >  2:429942/1‑247 (MQ=255)                                                              gAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGgaga                                                                                                                                                                                         <  1:368504/250‑1 (MQ=255)                                                               aaaTAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGagag                                                                                                                                                                                        <  1:633805/250‑1 (MQ=255)                                                                   gatGGAGCAGGCTGCACCTGATGAATTTTTTGCGCATCCTAAAGCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATCAATTGAATGTTAGTTCGAAAGGCAAAAAGGCCATCCTTGCGGATGGCCTTTCGCTTGATTTGATGTCTGTCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGtt                                                                                                                                                                                    <  2:395842/248‑1 (MQ=255)                                                                      ggAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGTGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCAc                                                                                                                                                                                 <  2:841192/250‑1 (MQ=255)                                                                          cAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGG‑CCCGCCCCCCACCCCCCCCGCCGGTGCTT‑CTCAACG‑CTCACATCCCCCCCCCCCGGGTTTGTGCTTCCCGGGagaggggttcccggc                                                                                                                                                                             >  2:611934/1‑239 (MQ=255)                                                                          cAAGCTGCAACTGATGAATTTTTTGCGCACCATAAAACAGAGCGTACGAGGGCATTTTTATCACAGGGAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCGTTCGGATGGCCTTCCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGac                                                                                                                                                                             <  2:469203/250‑1 (MQ=255)                                                                           aaGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGaca                                                                                                                                                                            <  1:42639/250‑1 (MQ=255)                                                                                  acgtgatgaTTGTTTGGCGCAACCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATGGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAacaaca                                                                                                                                                                     <  2:657810/247‑1 (MQ=255)                                                                                       atgaATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAt                                                                                                                                                                  <  2:851851/248‑1 (MQ=255)                                                                                          aaTTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAAc                                                                                                                                                            <  1:387695/250‑1 (MQ=255)                                                                                                   agcAGCCTAAATCAGGGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGcc                                                                                                                                                    <  2:640767/248‑1 (MQ=255)                                                                                                    gcATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCa                                                                                                                                                  <  1:753401/250‑1 (MQ=255)                                                                                                       tCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGTTAATCCATTAATTGAATGTTAGTTCGAAAATCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTc                                                                                                                                               <  1:835261/250‑1 (MQ=255)                                                                                                         caaaaTCAGAGCGTACGAGGGCATTTTTACCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCt                                                                                                                                              <  1:120876/247‑1 (MQ=255)                                                                                                              tCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGAc                                                                                                                                        <  1:469646/250‑1 (MQ=255)                                                                                                              tCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGAc                                                                                                                                        <  1:154876/250‑1 (MQ=255)                                                                                                                            ggCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGttt                                                                                                                         <  2:191149/250‑1 (MQ=255)                                                                                                                                       cccggttatcccATGAATGGAAGTTTAGGTCGAAAGGAAAAATGGCCATCCGTTCGGAGGGCCTTTCGCTTGTTTTGAGGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTc                                                                                                              <  2:169646/240‑1 (MQ=14)                                                                                                                                          aGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTCCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCTT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTgg                                                                                                           <  2:447587/250‑1 (MQ=255)                                                                                                                                            ttAATCCATTAATTGAATGTTATTGCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCCCCCTCCGCGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCa                                                                                                         <  1:699233/249‑1 (MQ=255)                                                                                                                                            gTAATCCATTAATTGAATGTTAGTACAAAAAGCAAAAAGGCCGTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCGCCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCa                                                                                                         <  2:91266/250‑1 (MQ=255)                                                                                                                                                tCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTc                                                                                                     <  1:442131/250‑1 (MQ=255)                                                                                                                                                  cATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTcc                                                                                                    <  1:607569/249‑1 (MQ=255)                                                                                                                                                  cATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTcc                                                                                                    <  1:713038/249‑1 (MQ=255)                                                                                                                                                   aTTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCt                                                                                                  <  1:430299/250‑1 (MQ=255)                                                                                                                                                    ttAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTa                                                                                                 <  2:610280/250‑1 (MQ=255)                                                                                                                                                       aTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTAct                                                                                               <  1:349679/249‑1 (MQ=255)                                                                                                                                                          gAATGTTAGTACGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCGTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACtctc                                                                                            <  1:616645/249‑1 (MQ=255)                                                                                                                                                           aaTGTTAGTTCGAAAAGCAAAAAGGCCCTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGc                                                                                          <  1:764709/250‑1 (MQ=255)                                                                                                                                                                 aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTAGGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATggg                                                                                     <  2:134759/249‑1 (MQ=255)                                                                                                                                                                 aGTTCGAAAACCAAAAAGCCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTGTGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTGCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATggg                                                                                     <  2:109013/249‑1 (MQ=255)                                                                                                                                                                     cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTCCCTCCCCCCCCCCCCCCGGCCCGTTCTTT‑TCCAACC‑TTCAAACCCCCCCCCCCGGGGTTTTTCCTCTCCGGGGGGGGGTTTCCCCCCAAACAAAAAAA‑AAAAAAAAAAACCCACCCTTCC‑TCTGAGCCCTTTTTTTTTTTTTTTTTTTTGGCGGTTCCTTACCTTCCCCTGGGggga                                                                                 >  2:549145/1‑250 (MQ=255)                                                                                                                                                                              aaaaGGCCATCCTTTCGGGGGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTa                                                                       <  2:629848/250‑1 (MQ=255)                                                                                                                                                                                     cATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCgg                                                                <  1:765909/250‑1 (MQ=255)                                                                                                                                                                                       tCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGgcg                                                              <  1:397782/250‑1 (MQ=255)                                                                                                                                                                                              ggATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGGGACCCCACACTACCATCGGCGCTACggg                                                       <  1:127302/250‑2 (MQ=255)                                                                                                                                                                                              ggATGGCCTTTCGCTTGATTTGAGGTCTGGCAGTTTAGGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACgg                                                        <  2:541472/249‑1 (MQ=255)                                                                                                                                                                                                          gCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTg                                           <  1:219440/250‑1 (MQ=40)                                                                                                                                                                                                           cTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGa                                          <  1:806290/250‑1 (MQ=40)                                                                                                                                                                                                             tgatttgatGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCCCCCCCCCCCCGGCCGGTGCTT‑TGCAAAGCTTCAAACCCCCCCCCCCGGGGTTTTTCCCCCCTGGGGGGGGGTTC‑CCCCCCAACAAAAAATAAAAAAAAAAAGCCCA‑CCTTCCCCCTGAG‑ACCTTTTTTTTTTTTTTTGTCTGGGCGGTTCCTCCTCTCCCCTGGGGGGACCCCCCACCACCACCCGAGCGACGGCGTTTCCCCTCTggtg                                        >  2:546829/1‑247 (MQ=255)                                                                                                                                                                                                              gatttgatGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAg                                         <  1:611934/248‑1 (MQ=40)                                                                                                                                                                                                                  tgatGTCTGGCAGTTTAGGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCgg                                    <  2:346744/249‑1 (MQ=39)                                                                                                                                                                                                                           gCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTc                           <  1:211057/249‑1 (MQ=38)                                                                                                                                                                                                                                   tGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGac                  >  1:785696/1‑250 (MQ=38)                                                                                                                                                                                                                                        ggcgT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCCCACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACcg             >  2:733857/1‑250 (MQ=38)                                                                                                                                                                                                                                        ggcgT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACcg             <  2:135918/250‑1 (MQ=38)                                                                                                                                                                                                                                           gT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATTGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCgcgc          >  1:447972/1‑250 (MQ=38)                                                                                                                                                                                                                                                tGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACt      >  1:716148/1‑250 (MQ=38)                                                                                                                                                                                                                                                  cccGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTg     <  2:87486/249‑1 (MQ=38)                                                                                                                                                                                                                                                    cgcgACCCTCCGGGCCGTTGCGT‑CGCAACG‑TGCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTgccg  <  2:505139/250‑1 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                           AACACATGAGATGGGGTTTGCACGAACCGTCGCTGACCGGGTAATTTTTATGGATCGTGGGGAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTT‑CGCAACG‑TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAG‑CCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCG  >  NZ_CP009273/3416403‑3416894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.