| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,171,107 | 0 | C | A | 35.9% | 122.4 / 34.2 | 78 | E55* (GAG→TAG) | nudF | ADP‑ribose diphosphatase |
| Reads supporting (aligned to +/- strand): ref base C (37/13); new base A (0/28); total (37/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.62e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCCCCGGGCTTGCCAGGAAACTTAACACCGGTTTGGT‑CCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTAAATGTGAATTTCAGCGACGTTTGACTGCCGTTTGAGCAGTCATGTGTT > NZ_CP009273/3170864‑3171347 | ccccgGGGCTGGCCAGAAATCTT‑ACCCCGGTTTGGTCCCGTTGGACTATCGGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAAt < 1:564019/250‑1 (MQ=255) ccAGAAAACTAACCCCCGTTTTGTC‑CCGTTCGACTACCCGCCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCAc < 1:436469/250‑1 (MQ=255) aaaCTTAACACCGGTTTGGT‑CCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCCCCTCAt > 2:457831/1‑250 (MQ=255) cTTAACACCGGTTTGGT‑CCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGAc > 1:425056/1‑250 (MQ=255) tAACACCGGTTTGGT‑CCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACt > 1:42032/1‑249 (MQ=255) cGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGAAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGac > 2:575846/1‑247 (MQ=255) tATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGa > 2:194382/1‑250 (MQ=255) cagcccccGCCTCTTCAATCGCTCCGCGACGGGCAACATCTTCCCCACTTCCCCCCTCTTCAATCACCCCGGCAACCATCCCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTCCATCACGCAC‑TGGGTAAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACg < 1:491747/245‑1 (MQ=255) gccccGCCTCTTAAACCCCTTCCCGACGGCCAACCTCCTCCACCCTTCCCCCCTCTCCAATCACCCCGGCACCCATCCCCATGAGCCAAGGGGTTTCCG‑TGGTGTCGTACGCGGCAACCCTAATCGGCCCAATCAGCACAACTTCACCACGCAC‑GGGGTCAAA‑GGGTAGGAAGCCGGCGGCGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGaaa < 2:805979/248‑1 (MQ=255) cccccGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACCCTTCCCCCCTCTTCAATCACCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑GGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGaaa < 1:75261/248‑1 (MQ=255) tCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAAt > 1:645997/1‑250 (MQ=255) ctTCAATCCCTCCGCGACGGGCAACATCTTCCCCACTTCCACCCTCTTCAATCACCCCGGCACCCATCCCCAGTAGCCAAGGGGTTCCGC‑TGGTGTCGTACGCGCCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCCC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAg < 1:150645/250‑1 (MQ=255) ttCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCtata > 2:322722/1‑246 (MQ=255) aaTCACTTCGAGAAGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCAGAATCAGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCAGCGTGACAGCGCTCAAAAATTTCACGCCGCAACTCAAGACACATTTGCCCGTTGAATGGACGAAGACGAAATCTATAAAGATc > 2:677871/1‑249 (MQ=255) cctccgccccGGACAAGATCTTCCACCCTTCCACCCTCTTATACCTCCCAGGCACCACTCCCAATTCCGCATGGTCTTTCGC‑TGGTGCCTTACTCGCCATTCCATTTCTGCACAAACAGCAAACCTTCACCACGCAC‑TGGGTCAAA‑GGGTACCAAGACGGCGGCTTGCCCGCGTTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATg < 2:371128/241‑1 (MQ=255) ttCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCACGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGa > 1:397410/1‑249 (MQ=255) cgcgACGGCCAACATCTTCCCCACTTCCCCCCTCTTCAATCACCCCGGCACCCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAACCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGaaaa < 1:90093/250‑1 (MQ=255) gcgACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGaaaa > 1:387654/1‑249 (MQ=255) ccggccaccttctcCCACCCTTCCCCCCTCTTCAACCACCCCGCCACCCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAACCCGAATCTGCTCAACCAGCACACCTTCATCACGCAC‑TGGGTCAAG‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAg < 1:464780/240‑1 (MQ=255) cGGGCAAAATCTTCCACACTTTCACCCTCTTAAATCACCCCGGAAACAATCCCAAGTAGCCAAGGGGTTTCGC‑GGGTGTCGTACGCGGAAACCCGAATCTGCTAAATCAGAACAACTCAATCACGCAC‑GGGGTAAAA‑GGGGAGCAAGACTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGc < 1:3550/250‑1 (MQ=255) gggCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGcc > 1:182205/1‑250 (MQ=255) ggCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCcg > 1:154936/1‑250 (MQ=255) cAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCcgc > 2:525652/1‑249 (MQ=255) aaCATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAATCCGCGa > 1:420274/1‑250 (MQ=255) ccACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAgtgt > 1:461653/1‑250 (MQ=255) cacaCTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGtt > 1:756441/1‑250 (MQ=255) tttCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCg > 2:571496/1‑250 (MQ=255) cccccTCTTCAATCATCCCGCCACCCACCTCCCATCGCCAAGGTGTTTCTC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCACTCACCCCATCTTCATCCCGCAG‑TGGTTCAAG‑GGGTTGCAATCCGGCGGCTGTACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTg < 2:762427/247‑1 (MQ=255) aCCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTCTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGc > 2:461664/1‑249 (MQ=255) cccTCTTAAACCATCCCGGAAACCCTCTCCAGTGGCAATGGTGTTCCAC‑TGGTGTCGCCCGGGTAAAGCCGAATCGCCTCAATAACCACACCTTCAACCGGCAC‑TGGTAAAAA‑GGGAAGAAATACTGGGGGTTAACCGAGCAAAAAATTTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCaa < 2:309792/250‑1 (MQ=255) ttCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAAtt > 1:384545/1‑250 (MQ=255) cAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGCCTCATTTGCCCGTTGAATAGACGAAGACGAAATCTATAAAGATCTAATGAAAAAAAACCGCGATAAAGGGTTTCTCGTGCAATAATTTc > 2:165047/1‑250 (MQ=255) aacccgcccGGCACCCATCTCCAGT‑GCCATGGGGTTTCCCGTGGGTGCGGACGCGGCAATCCAAATCGGCAAAAACAGCAAACTTTCCCCCCGCAC‑GGGTACAAA‑GGGTAAAAAGAGGGCGGCGTGCCCGCGCAAAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCt < 2:358923/244‑1 (MQ=255) catcCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAAttt > 2:389138/1‑245 (MQ=255) atcCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTc < 1:389138/245‑1 (MQ=255) atcCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACAt > 1:490040/1‑250 (MQ=255) ccGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAGTAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGt > 1:221066/1‑250 (MQ=255) caacccACCTCCAGAAGCCAGGGGGTTCCGG‑TGGGGCCTGACGCGGCAACCCAAATCTGCCAAAACAGAACACCTCCACCACGCAC‑GGGGACAAG‑GGGGAGCAAGCGGGCGGCGGGACCGCGCAAAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGtttt < 2:771781/246‑1 (MQ=255) cATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGcc > 2:599648/1‑249 (MQ=255) aTCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCa > 1:437832/1‑249 (MQ=255) tcCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGCTTCTCGTGCAATAATTTCTACATCGTTTTTTCCAAATg > 2:274323/1‑250 (MQ=255) cAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATgc > 1:709502/1‑248 (MQ=255) aGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCATTTTTGCCAAATGTAACgg > 2:496484/1‑250 (MQ=255) cAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACggg > 1:265053/1‑248 (MQ=255) ggttttCGC‑TGGTGTCGTCCGCGGCAACCCAAATCTGCTCAATCAGCACACCTCCATCACGCAC‑TGGGTAAAG‑GGGTAGCAAGACTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGtt < 1:271331/247‑1 (MQ=255) ggTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTg > 1:834262/1‑250 (MQ=255) ggTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTg > 2:601543/1‑250 (MQ=255) ttccGC‑TGGGGCCGTACGCGGCAATCCGAATCTGCACAATCAGCACAACTTCATCACGCAC‑TGGGTAAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTc < 1:540373/247‑1 (MQ=255) tgtCGC‑TGGTGTCGTCCGCGACAATCCAAATCTGCTCAATCAGCACACCTTCATCACGCCC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTc < 1:228512/248‑1 (MQ=255) tctc‑TGGTGTCATAGCCGGAAACCCACATCTCCACAACCACCACAACGTACACGCGCAG‑GGGGTAAAA‑GGTTAGCAAGACGGGGGAGTGACCCCGCTAAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCt < 2:313657/246‑1 (MQ=255) cGC‑TGGTGTCGTACGCGGCAACCCAAATCTGCACAATCACCACACCTTCATCACGCCC‑TGGTTCAAA‑GGGTAGCAAGCCTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTgg < 1:502166/250‑1 (MQ=255) gC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGc > 2:204820/1‑250 (MQ=255) cgttgggggcgcaCGCGGCAATCCGAATCTGCTCAAACAGCACAACTACACCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGCCCGCGCAAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTg < 2:645997/237‑1 (MQ=255) cGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCAt > 2:159764/1‑250 (MQ=255) gcaCGCGGCAACCCGAATCTGCTCAACAAGCACACCTTCACCCCGCCC‑TGGGTAAAA‑GGGTACCAAGCTTGCGGCGTGACCGCGCTAAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCAtt < 1:549909/248‑1 (MQ=255) tccgcggaaccccGAATCTGCTAAACCAGCAAAACTTCACCCCGCA‑‑TGGGTAAAAGGGGTAGAAGGATTGCGGGGTGACCGCTCAAAAAAATTGCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTg < 2:106310/239‑1 (MQ=255) cgcgGCAACCCGAATCTGCACAACCAGCAAAACTACACCACGCAC‑TGGGTCAAA‑GGGTAGAAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGtt < 1:121346/250‑1 (MQ=255) gcgGCAATCCGAATCTGCTCAATCAGCACAACTTCACCCCGCAC‑TGGGTAAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTa < 1:669197/250‑1 (MQ=255) gAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTgg > 2:749922/1‑249 (MQ=255) aTCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCAc > 1:382886/1‑250 (MQ=255) ccgcaaaaccAGCACACCTTAATCAC‑CACAGGGGACAAG‑GGGGAGAAAACATGCGGCGTAACCGCGCTCAAAAATTACCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTa < 2:16724/241‑1 (MQ=255) cTCAACCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACGGCGGCGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAACAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATa < 1:815218/250‑1 (MQ=255) tCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGCAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAg > 2:483229/1‑250 (MQ=255) caagcacacaaaCTACACCACGCAC‑GGGGTAAAG‑GGGTAGAAAGACGGCGGCGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGt < 2:301603/240‑1 (MQ=255) aaccAGCACACCTCCACCCCGCCC‑TGGGTCAAA‑GGGAAGCAAGACTGCGGCGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGt < 1:115093/246‑1 (MQ=255) aTCAGCACAACTTCACCACGCAC‑GGGGTAAAA‑GGGTAGCAAGACGGGGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGa < 1:289345/250‑1 (MQ=255) gCACACCTCCACCCCGAAC‑GGGGAAAAA‑GGGAAGCAAGACGGCGCCTGGCCCGCGCAAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTa < 1:24216/250‑1 (MQ=255) gCACAACTTCATCCCGCAC‑TGGGTCAAA‑GGGTAGCAAGACGGCGGCGTGCCCCCCCTAAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTa < 2:387654/250‑1 (MQ=255) cacaACTCCATCACGCAC‑GGGTTCAAA‑GGGAAGCAAGACTGCGGCGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTaa < 1:817347/250‑1 (MQ=255) catccCGCAC‑TGGGTAAAA‑GGGTAGCAAGACTGCGGCGTGCCCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTAAATGTGAAt < 1:600924/250‑1 (MQ=255) gCAAGCCGGCGGCATACCCGCACTAAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTAAATGTGAATTTCAGCGACGTTTGACTGCCGttt < 2:78232/250‑1 (MQ=255) gACTGCGGCGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTAAATGTGAATTTCAGCGACGTTTGACTGCCGTTTGAGc < 1:811911/250‑1 (MQ=255) gcggcgGGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTAAATGTGAATTTCAGCGACGTTTGACTGCCGTTTGAGCAGTc < 1:622665/250‑1 (MQ=255) cggcctccccGCCCTCAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTAAATGTGAATTTCAGCGACGTTTGACTGCCGTTTGAGCAGTCa < 1:508280/242‑1 (MQ=255) gaccccGCGCTAAAAAATTACCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTAAATGTGAATTTCAGCGACGTTTGACTGCCGTTTGAGCAGTCAtgtg < 2:678905/246‑1 (MQ=255) gTGCCCGCTCTAAAAATTTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTAAATGTGAATTTCAGCGACGTTTGACTGCCGTTTGAGCAGTCAtgtg < 2:221066/250‑1 (MQ=255) gTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTAAATGTGAATTTCAGCGACGTTTGACTGCCGTTTGAGCAGTCAtgtg > 2:163195/1‑250 (MQ=255) gACCGCGTAAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAAGAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTAAATGTGAATTTCAGCGACGTTTGACTGCCGTTTGAGCAGTCATGTGtt < 1:739410/250‑1 (MQ=255) | CCCCCGGGCTTGCCAGGAAACTTAACACCGGTTTGGT‑CCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGC‑TGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCAC‑TGGGTCAAA‑GGGTAGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGGTTGTCTGGCTTAAGCATTGTTAATGTCCTGGCACTAATAGTGAATTAAATGTGAATTTCAGCGACGTTTGACTGCCGTTTGAGCAGTCATGTGTT > NZ_CP009273/3170864‑3171347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |