| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 30.9% | 116.0 / 26.3 | 69 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| Reads supporting (aligned to +/- strand): ref base C (8/39); new base T (21/0); total (30/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.29e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AATAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTGAA > NZ_CP009273/4593918‑4594401 | aaTAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCAttttttttttttt > 2:256003/1‑249 (MQ=255)aaTAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATtttttcttttt < 2:67655/249‑1 (MQ=255) aTAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGCATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGCATCTCGCTTGCGGCGG‑CCTGttcttcttttttt > 2:24728/1‑248 (MQ=255) cgcgcAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCa < 2:534776/250‑1 (MQ=255) cgcgcAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑GTATTTTTTCTTTTTCTTccc > 2:188490/1‑249 (MQ=255) gcAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCATTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TGCTTTTTTTTTTTTTTTCCAt > 2:565435/1‑248 (MQ=255) aGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTCTGCTATggg > 1:118864/1‑247 (MQ=255) aGGGTGCAAGAGAACGTAACGTGGCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTGGCGGGTAACCCTTATAAGCTCCATTCCTATTCCAGTCAGGAGTCATTTCAGGATTCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATgaga < 2:534529/250‑1 (MQ=255) cAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAg > 1:199280/1‑250 (MQ=255) aaGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCCTTTTTTTTTTTTTTTCCATTTGAAGTGatc > 2:516074/1‑248 (MQ=255) gagaACTTAACTTTCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAgcgc < 2:304833/250‑1 (MQ=255) gaACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCag < 2:790426/250‑1 (MQ=255) aacttGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATAAAGAAGAGAAATGGCGCACTCATAGAAAAAGGCGTCAAGAGTAGTATCGGTATTGAGAGTGTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATGCCAGTCAGGAGTCATTTCAGGATGCCATGACGCGGATCTCGTTTGCGGCGG‑TCATTTTTGCTTTTTCTGCCATGAGAAGGGAGCGCagagag < 2:385116/248‑1 (MQ=255) ttCTGTTTATGGAGATGCCGCAGAATGGGACACAGCCGAAGTAAGAAGAGAAATGTCGCACTCATAGAAAAATGAGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTGTGCGGGTAACCCGTATAAGCTCCATACCTATACCAGTAAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCtt < 2:745767/250‑1 (MQ=255) cTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCtt < 2:164809/248‑1 (MQ=255) cTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCtt < 1:814412/248‑1 (MQ=255) cTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCtt < 1:219805/248‑1 (MQ=255) gTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTTCCCTGAGAAGGGAGCGCAGAGAGGGGTTATTTTGCct > 1:593707/1‑250 (MQ=255) tGGAGATGCCGCAGAATGGACCACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCAGGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTTCGGGTAACCCTTATAAGCTCCTTACCTATACCAGTCAGGAGTCTTTTCAGGATGCCATTTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGATGGATTATCTTGCctgact < 1:737897/249‑1 (MQ=255) tGGAGATGCCGCAGAATGGAACACAGCTGAATTAAGAAGAGAAATGCCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCCTTTTTTCTTTTTCTCTCTTGAGAAAGGAGCGCACAGAGGGTTTTTTTTGcttttttg > 1:382047/1‑243 (MQ=255) tGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCctgact < 1:848149/249‑1 (MQ=255) ggAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTTTCTTGTGAAGTGTGCGCAGAGGGGGGTTATTTTGCcttactg > 2:466217/1‑249 (MQ=255) gagaTGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCctgactg‑a < 1:737361/249‑1 (MQ=255) tGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TTCTTTTTTCTTTTTTTTCCCCGAGTAGGGAGCGCAGAGAGGGGTTTTATTTCCTGGCTG‑AACAgg > 1:801579/1‑250 (MQ=255) tGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTgg < 1:652754/250‑1 (MQ=255) gAATTGAACACAGCCGAATTAATAAGAGAACTGTCGCACTCATAGAAAAATGCGTCATGAGGAGTATCGGTATTGAGATTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGAGATTATCTCGCCTGACTG‑AACTGGC‑GATTaa < 2:176596/250‑1 (MQ=255) cacaGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTCTTCCATTAGAAGTGAGCGCAGGGAGGGATTTTTTTTCCTGTCTG‑AACTGGC‑GATTAAG‑TTTTcgc > 1:653124/1‑250 (MQ=255) acaGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCCTTTTTTTTTTTTTTGCCCTGAGGAGGGGGGGGCGAGGGGGGTTATTTTGCCTGACTG‑AACTGGC‑GGTTAAG‑GTTCcccg > 1:184744/1‑250 (MQ=255) aaTTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCgg < 2:199280/250‑1 (MQ=255) aTTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGc < 1:12691/250‑1 (MQ=255) tAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTGCCATGAGAAGGGAGGGCGGGGGGGGGTTATCTTGCCTGCCTG‑AACTGGG‑GGTTAAGTTTTCCGCG‑TAccggcgg > 1:622564/1‑245 (MQ=255) agaagaGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGtt < 2:370691/249‑1 (MQ=255) agagAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTGCCCTGTGAAGTGGGGGCAGAGAGGGGTTATATTGCCTGACTG‑GAATTGC‑GGTTTAG‑TTTTCGCG‑TACCCGGCGGTTGGt > 2:780612/1‑250 (MQ=255) aaaTGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTTTTCCATGAGAAGTGAGCGCAGAGAGGGGTTATCTTTCCTGACTG‑AACTGGC‑GATTAAG‑TTTCTGCG‑TACCCGGCGTTTTGTTAtt > 1:163361/1‑250 (MQ=255) tGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCg < 2:139676/250‑1 (MQ=255) cACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGgatga < 1:268685/250‑1 (MQ=255) aTAGAAAAATGCGGCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGgatgatgat < 2:708208/249‑1 (MQ=255) gCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAGCCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCCTTTTTTTTTTTTTTTCCATGAGAAGGGAGGGCAGAGGGGGGTTTTCTTGCCTGACTG‑AAAAGGC‑GATTAAA‑TTTCCGCG‑TAACCGGCGGTTTGTTTTTGCGGGTGATGATATTTAAGCTCg > 1:130888/1‑250 (MQ=255) gCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCCTTTTTTTTTTTTTTTCCCTGAGAAGTGAGCGCGGGGAGGGGTTATCTTTCCTGGCTG‑AACTGGC‑GGTTAAG‑TTTTCGCG‑TACCCGGCGGTTTGTTTTTTCGGGTGGTGGTATTgtaagtcg > 1:313022/1‑243 (MQ=255) gTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCCTTTTTTTTTTTTTTGCCATGAGAAGTGAGCGCAGAGAGGGGTTTTCTTGCCTGACTG‑AACTGGC‑GGTTAAG‑TTTTCGCG‑TACCCGGCGGTTTGTTTTTTCGGGTGATGATATTTAAGGTCGGc > 1:16004/1‑250 (MQ=255) tGAGTAGTATCGGTATTGAGAGTTTAGTCAGAAAGTTTGCGGGGAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGAt < 2:803976/250‑1 (MQ=255) agtagtATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTg < 2:112044/250‑1 (MQ=255) agtaTCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTGCCATGAGGAGGGGGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GGTTTAG‑TTTCCCCG‑TACCCGGGGTTTAGTTTTTGCGGGTGATTATATTTAAGCTCGGCCGATTgggt > 1:207593/1‑248 (MQ=255) taTCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTTCCACTGGAAGGGAGCGCCGGGAGGGGGTTTTTTTCCTGACTGTAACT‑GC‑GGTTAAG‑TTTCCGCGTTCCCCGGCGTTTATTTTTTGTGGTGGATGAATATGAAGCTGGGTTGGTTTGttt > 2:580735/1‑249 (MQ=255) taTCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCa < 1:466217/250‑1 (MQ=255) aTCGGTATTGTGAGTTTATTCAGAAAGCTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTTCATTTTTT‑TTTTTTTTCTCTTAGTCGCGTGCGCCGAGAGGGGTTATTTTTCCTGCCTG‑AACCTGC‑GAGTACT‑GTTCTGCG‑AACTCGGCGTTTTGGTTTTGCGGGGGATGATGTTCATGACCGGCTGCTTTGTTcct > 2:497533/1‑248 (MQ=255) agTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTTTCCTGAGAAAGGTGGGGCGAGAGGGGGTTTTTTGCCTGACTG‑AACTGGC‑GAGTAAG‑TTTTCCCG‑GACCCCGCGGTTTGTTTTTTTGGGTGATGATATTGAAGCTCGGCTGATTGGTTTATTGTCgtccttac > 2:148008/1‑243 (MQ=255) gTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCAcc < 1:845171/250‑1 (MQ=255) tttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTTTGCCATGAGAAGTGGGCGCCGAGGGGGATTATCTTTCCTGACTG‑AACTGGC‑GGTTTAG‑TTTCCGCG‑GAACCGGCGGTTTGGTATTTCGGGTGGTTATTTTTAAGGTCGGCTGGTTGGTTCATTTTCggcctccacg > 2:148738/1‑241 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTTTCCAGAGAAGGGAGCGCCGAGGGGGGTTATCTTGTCTGACTG‑GAATGGC‑GATTAAG‑ATTTCGCG‑TACCCCGGGGTTTGTTATTGCGGGTGGTGATATTTAAGTGCGGCTGATTGTGTCATTTTCGCCCTCaacca > 2:611796/1‑246 (MQ=255) aGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGgtgt < 2:136546/250‑1 (MQ=255) tttGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTGCCCTGAGAAGTGAGCGCCGAGGGGGGTTATCTTGCCTGACTG‑AAATGGC‑GGTTTAA‑TTTCCGCG‑TTCCCCGCGGTTTGTTATTGCGGGTTGTGATATTTAAGCTCGGCTGGTTGGTTTATTGTTGGCATCACCCCTGGGCGGTGGAt > 1:142844/1‑250 (MQ=255) ggTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGGTGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTa < 2:460358/250‑1 (MQ=255) cccTTATAAGCTCCATACCTATACCAGGCAGGAGTAATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCg < 2:26951/250‑1 (MQ=255) ccTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGt < 2:55412/250‑1 (MQ=255) aTACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGAt < 1:624185/250‑1 (MQ=255) tACCTATACCAGTCAGGAGTAATTTAAGGATGCCATGGCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TCCCCGGCG‑TTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGAttt < 1:665452/250‑1 (MQ=255) cTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTGCCATGAGAAGTGAGGGCAGAGAGGGGTTATTTTTCCTGACTG‑AACTGGC‑GGTTAAG‑TTTTCGCG‑TACCCGGCGGTTAGTTTTTGCGGGTGATGATATTGAAGCTCGGCTGGTTGGTTCATTTTCGCCCTCACCGCTGGGCGGGGTATTAAGGAAAGCGTCCACGCTGGGGAttttt > 1:582905/1‑250 (MQ=255) cTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGTAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGAttttt < 1:687237/250‑1 (MQ=255) ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTGCCATGAGAAGTGAGCGCAGAGAGGGGTTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTTCGCG‑TACCCGGCGGTTAGTTATTGCGGATGATGGTATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGGATTAAGTAAAGCGTCAACGCTGGAGAtttttta > 1:626561/1‑248 (MQ=255) taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGAGCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTtc < 2:504074/248‑1 (MQ=255) ccAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCCTTTTTTTTTTTTTTTCCCTGAGAAGTGGGGGCCGAGGGGGAGTTTTTTTCCTTACTG‑GAATGGCGGTTTAAT‑TTTCCCGG‑TA‑CCGGCGGTTTTTTTTTTGGGGTGATGTTATTTTAGCTCGGCTGGTTGGTTTTTTTTCGCCACTACCCCCGGGCGGGGGATTAAGTAAAGCGTCTACCCGGGGGAtttttttt > 2:326244/1‑245 (MQ=255) ccAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTtcatc < 1:834500/249‑1 (MQ=255) aGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTTTGCCCTGAGAAGTGAGCGCAGAGAGGGGTTTTTTTGCCTGACTG‑AACTGGC‑GATTTAG‑TTTTCGCG‑TACCCGGCGTTTTGTTATTGCGGGTGGTGGTATTTAAGGTCGGGTGATTTGTTTATTTTTGCCCTCCCCGCTTGGCGGTGTATTTAGTAAAACGTCAACGCTGGGGAGTTTTCATCAGGAACTCtt > 1:160733/1‑250 (MQ=255) aGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCtt < 2:338554/250‑1 (MQ=255) gATGCAATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTaa < 2:644030/250‑1 (MQ=255) tCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTa < 1:148738/249‑1 (MQ=255) cgcgGATCTCGTTTGCGGCGG‑TCATTTTTTTTTTTTTTGCCCTGAGAAGTGGGCGCAGAGAGGGGTTATTTTGCCTTACTG‑AAATTGC‑GATTTAG‑TTTTCGCG‑GACCCGGCGGTTTGTTTTTTCGGATGATGATATTTAAGCTCGGCTGGTTTGTTTATTTTCGCCATCACCCCTGGACGGGGGGTTTAATAAAGAGTCCACGCTGGGGATTTTTTATCAGGAAATCTTTTTTTCATTTACATGTGTACg > 2:600902/1‑250 (MQ=255) gATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAg < 1:486420/250‑1 (MQ=255) gTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACGCTTTTTGTCATTAAATGGTGTACGTCAGGcgac < 1:661975/249‑1 (MQ=255) gcggcgG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGcgaccgac < 2:789203/249‑1 (MQ=255) cATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATGTTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTGaa > 1:816823/1‑249 (MQ=255) | AATAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGG‑TCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTG‑AACTGGC‑GATTAAG‑TTTCCGCG‑TACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTGAA > NZ_CP009273/4593918‑4594401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |