| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 782,311 | 0 | A | C | 42.0% | 116.2 / 19.1 | 69 | G247G (GGT→GGG) | gpmA | 2,3‑diphosphoglycerate‑dependent phosphoglycerate mutase |
| Reads supporting (aligned to +/- strand): ref base A (32/8); new base C (0/29); total (32/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.68e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAGTTTCATTC > NZ_CP009273/782064‑782557 | gaggCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACTTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTAcc < 2:227031/247‑1 (MQ=255)gATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTAcc < 1:353648/250‑1 (MQ=255)gATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGGGCTCCA‑TTTTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTccc > 2:159900/1‑250 (MQ=255) ccTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCACATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTgg < 2:662223/250‑1 (MQ=255) gCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGttt > 2:660394/1‑250 (MQ=255) tCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGc > 1:501990/1‑249 (MQ=255) tGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAAccgc > 1:218812/1‑250 (MQ=255) cGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCg > 1:102881/1‑250 (MQ=255) cTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGTTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCCCCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTCCCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCAtt < 1:369766/250‑1 (MQ=255) ggCGAATGCAGAAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGGGGCGTATCCGATGAATCACCACAGGCCTGATAAGCC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTCCCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTAc < 1:244979/250‑1 (MQ=255) cGAATGCAGTAAAAGCGCGTCGCGGTTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCCCCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTAAAACGAA‑TGACGTTTACTTCGTTTTCCCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTAccc < 1:552095/250‑1 (MQ=255) aaTGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTAcc > 1:830252/1‑247 (MQ=255) gCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGat > 2:463128/1‑249 (MQ=255) aaagGCGGGTCGCGGGT‑AGGTTTAAGTTGTCGGATGCG‑CGTCAAGGGTGGCTTTTCGAATAAATCCCCCCAGGCCTGATAAGTC‑GCGCACCGTCACAAAGGTAAATGTCCCCCA‑TGTTTACCAACAAAAAAGCCGCCTCCCTTGCTGTCGGTTTTTCCATTTTAACCGAA‑TGCCTTTTCCTTCGCTTTCCCGTGTTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGc < 2:362172/250‑1 (MQ=255) gcgTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGttt > 1:106363/1‑248 (MQ=255) cgTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAg > 1:616544/1‑250 (MQ=255) gggTAAGGTTTAA‑TGGCCGGCTGGGCCGTC‑AGGGTGGCTTTTCCGATAAATCCCCAAAGGCCTGAAAAGGC‑GCGAAGCGTCGCATCAGGCATTGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGCCTCTCTTGCGGTCGGTTTTCTCATTTTAAACGAA‑GGACTTTTACTTCTCTTTCCCCTGTTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGttt < 2:396617/250‑1 (MQ=255) gttaggttttAA‑TTGGCGGTGGCGCCGTA‑AGAGTGGCGTACCGGATGAACCCCCACGGGCCTAAAAGGTC‑GCGCAGCGCCGCATCAGGCAA‑GTGCCCCATTTGTTACAAAAAAAAAAGCCGACTCCCTTGCAGTCGGTTTTCTCATTTAAAACGAA‑GGACTTTTCCTTCGTTTTCCCCTGTTTTGAAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTg < 2:827352/243‑1 (MQ=255) ttAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATtctc > 2:55450/1‑250 (MQ=255) aatgggcGGAGGGGCCGGC‑GGGGTGGCGTATCCGATGAATCCCCACAGGCCGAATAAGTC‑GCGCAGCGCCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCGGTCGTCTTTCTCATTTTAAACGAA‑TGACGTTTCCTTCGTTTTCCCCTGTTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCtcg < 2:17853/243‑1 (MQ=255) atggtgggATGCGCCGGC‑GGGGGGGCGTACCCGATGAATCCCCACCGGCCTAATAAGCG‑CCGCAGCGTCGCAGAAGCCATGGTCCTCAA‑TTGTAAACAAAAAAAAGGCCGACCCCCTTGCAGTCGGTTTCCTCTTTTAAAACGAA‑TGACTTTTCCTTCGCTTTCCCTTGTTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCtcgt < 2:732979/243‑1 (MQ=255) gcCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATacac > 2:357188/1‑250 (MQ=255) tC‑AGGGTGGCGTACCGGATGAATCCCCACGGGCCTGAT‑AGTCGGCGCAGCGCCGCATCAGGCAATGTGCTCCA‑TTTTTAGAAAAAAAAAAGCCGCCTCACTTGCAGTGGGTTTTCTCATTTTAAACGAA‑TGACTTTTACTTCGCTTTCCCCTGTTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGc < 2:728911/250‑1 (MQ=255) tGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACg > 1:351928/1‑250 (MQ=255) gTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCCGCGGAACGcctg > 2:678842/1‑248 (MQ=255) gTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAg > 2:484049/1‑250 (MQ=255) aTCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAC‑TGACGTTTACTTCGCTTTACCCTGGTTTGTAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCATGCCAGTc > 2:384340/1‑250 (MQ=255) accacAGGCCTGATAAGTC‑GCGCAGCGTCTCCTCAGGCAATGTGATCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGTTTTGCAACCGCCGCTGCTTTCCCTGCGATCTCGTCAGCATTACCCAGATAATCGCGTTTCCGCGGTTTGTAATTCCGGTAGAACTCATACTCCAGCGGCACGCCGGTCggataattaaca > 2:492395/1‑240 (MQ=255) cgggCCTGAAAAGTC‑GCGCGGCGTCGCATAAGGAAATGTCCCCCA‑TTGTTAACAACAAAAAAGCCGACTCACTTGCAGTCGGTTTTCTCATTTTAAACGAA‑TGACGTTTCCTTCGCTTTCCCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCaa < 1:359511/248‑1 (MQ=255) aaaaGTC‑GCGCAGCTTCGCATCAGCCTTTGTGCTCCA‑TTGTTAGCAAAAAAAAAGCCGCCTCCCTTCCAGTCGGTTTTCTCATTTTAAACGAT‑TGCCGTTTCCTTCGCTTTCCCCTGTTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCAAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAAtct < 1:660471/246‑1 (MQ=255) agccggcgggcgcCGCAGCGGGCAATGGTCTCCT‑TTGTAAGAAACAAAAAGCCCGCCCCACTTGCGGCCGGCTTTCCCATTTAAACCGAA‑TGCCTTTTCCTTCTTTTTCCCCGGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCtcttct < 2:106162/241‑1 (MQ=255) gcgcAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGc > 1:434170/1‑250 (MQ=255) cGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTAt > 2:117899/1‑250 (MQ=255) cGCATCAGGCAATGTGCTCCA‑TTGTTAGAAACAAAAAAGCCGACTCCCTTGCGGTCGGTTTTCTCATTTTAAACGAA‑GGACTTTTCCTTCGCTTTCCCCGGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTAt < 1:735749/250‑1 (MQ=255) tCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATc > 2:448665/1‑247 (MQ=255) gggCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGTCTCCCTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGTCGTTTACTTCGCTTTCCCCGGGTTTCCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGat < 1:317882/249‑1 (MQ=255) aGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGa > 1:359528/1‑249 (MQ=255) ggaaaTGTGCTCCA‑TTGTTAGAAACAAAAAACCCGACTCTTTTGCAGTCGTTTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTCCCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGata < 1:171734/247‑1 (MQ=255) gCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGatat > 2:486602/1‑250 (MQ=255) tgCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCAc > 1:137404/1‑249 (MQ=255) cTCAA‑TTGTTAACAAAAAAAAAGCCGACTCTCTCGCAGTCGGTTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCTGGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAg < 2:830252/250‑1 (MQ=255) tCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAgc > 1:222737/1‑250 (MQ=255) ccA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAgcg > 2:694667/1‑250 (MQ=255) cA‑TTTTTAGAAAAAAAAAAGCCGACTCACTTGCAGTCGGTTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTCCCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAgc < 1:656882/248‑1 (MQ=255) a‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCa > 2:789143/1‑250 (MQ=255) gTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACg > 2:634934/1‑249 (MQ=255) aagaaaaaaaaaaGCCGCCTCATTTGCATTCGGTTTTCTAATTTTAAACGAA‑TGCCGTTTCCTTCGCTTTCCCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTa < 1:608098/242‑1 (MQ=255) caaAAAAGCCGCCTCACTTGCAGTCGGCTTTCTCATTTAAAACGAA‑TGACGTTTACTTCGCTTTCCCCTGTTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGtt < 1:843387/250‑1 (MQ=255) aaaGCCGACCCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGTGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGCCGCATTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCCCCAGCGCACGTAAAGAGTTACCg > 2:230972/1‑250 (MQ=255) accccGACTCCCTTGCAGTCGGTTTTCTCATTTTAAACAAT‑TGCCTTTTCCTTCGCTTTACCCTGTTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCgt < 1:384274/247‑1 (MQ=255) cccccTCATTTCCATTCGCCTTTCTATTTTTAAACGAA‑TTCCTTTTCTTTCCTTTTCCCCTGTTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGtgtg < 2:25104/246‑1 (MQ=255) gaatcccTTGCGGTCGGCTTTCTTATTTTAAACGAA‑TAACGTTTACTGCCCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCa < 1:259508/244‑1 (MQ=255) gACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCCCCAGCGCACGTAACGAGTTACCGTGTGcc > 2:623237/1‑249 (MQ=255) acctctctTGCAGTCGGTTTTCTCATTTAAACCAAT‑TGCCTTTTCCTTCGCTTTCCCCTTGTTTGCAGCCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCa < 2:695733/248‑1 (MQ=255) gCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCgatgat > 1:511038/1‑249 (MQ=255) cggTCGGCTTCCTCATTTAAAACAAA‑TGACTTTTCCTTCGCTTTCCCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATc < 1:58633/247‑1 (MQ=255) aGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTCCTTCGTTTTCCCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCAc < 1:746829/250‑1 (MQ=255) tgtgttttcctaTTTGAACCAAA‑TGCCGTTTCCTTCTCTTTCCCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCAcgc < 1:577124/239‑1 (MQ=255) tCGGTTTTCTCATTTTAACCGAA‑TGACGTTTACTTCGCTTTACCCTGGTTGGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCAc < 1:654209/248‑1 (MQ=255) cTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCt > 1:59014/1‑249 (MQ=255) tttCTCA‑TTTAAACGAACTGCTTTTTACTTCGCTTTCCCGTGTTTTCCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTc < 2:576967/249‑1 (MQ=255) gAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATAcgc < 1:357188/250‑1 (MQ=255) ttccTTCGCTTTCCCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAAt < 1:660394/246‑1 (MQ=255) ttACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGaa > 1:424855/1‑248 (MQ=255) tACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGTTCACCGCTCTTCATACGCGGCAGCATAg > 2:47851/1‑250 (MQ=255) gcctctcTTTCCCTTGGTTGGCACCCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAg < 2:698412/243‑1 (MQ=255) ccttgtcTTTCCCATTGTTTGCAGCCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAg < 2:811786/243‑1 (MQ=255) aCTTCTCTTTCCCCTGTTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAg < 1:341185/249‑1 (MQ=255) tttCCCCGGGTTTCAAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAGTTTCAtt < 1:157465/249‑1 (MQ=255) tttACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAGTTTCATTc > 1:818516/1‑250 (MQ=255) | GATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAA‑TTGTCGGATGCGCCGTC‑AGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTC‑GCGCAGCGTCGCATCAGGCAATGTGCTCCA‑TTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAA‑TGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAGTTTCATTC > NZ_CP009273/782064‑782557 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |