Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	1,264,332	0	A	T	36.4%	56.3 / 10.1	33	I238F (ATT→TTT)	kdsA	3‑deoxy‑8‑phosphooctulonate synthase
Reads supporting (aligned to +/- strand):  ref base A (5/16);  new base T (12/0);  total (17/16)
Fisher's exact test for biased strand distribution p-value = 2.26e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AGAAGGCGGCAACGAAAAAGTGATTCTTTGCGATCGCGGTGCTAACTTCGGCTATGACAACCTGGTTGTCGATATGCTGGGCTTCAGCATTATGAAGAAAGTGTCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCTTTTTTGC‑TTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCG  >  NZ_CP009273/1264088‑1264581                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                         agaagGCGGCAACGAAAAAGTGATTCTTTGCGATCGCGGTGCTAACTTCGGCTATGACAACCTGGTTGTCGATATGCTGGGCTTCAGCATTATGAAGAAAGTGTCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTGGGGCTGTGGGGGGCGGtttttttg                                                                                                                                                                                                                                                                      >  2:752373/1‑248 (MQ=255) agaagGCGGCAACGAAAAAGTGATTCTTTGCGATCGCGGTGCTAACTTCGGCTATGACAACCTGGTTGTCGATATGCTGGGCTTCAGCATTATGAAGAAAGTGTCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGaa                                                                                                                                                                                                                                                                     <  1:258661/250‑1 (MQ=255)             cGAAAAAGTGATTCTTTGCGATCGCGGTGCTAACTTCGGCTATGACAACCTGGTTGTCGATATGCTGGGCTTCAGCATTATGAAGAAAGTGTCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGGCTG‑GGGGGGGTGGTTTTTTGAGGG‑Gat‑ccgggt                                                                                                                                                                                                                                                       >  1:835624/1‑248 (MQ=255)                                           tAACTTCGGCTATGACAACCTGGTTGTCGATATGCTGGGCTTCAGCATTATGAAGAAAGTGTCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTCGGTCTG‑GCGGGGGTGTTTATTTGAGCG‑CGT‑CCCGGTCCGGGACATGCGGCATGTG‑A‑TTG‑TCCCTcc                                                                                                                                                                                                                      >  1:4341/1‑250 (MQ=255)                                                       tGACAACCTGGTTGTGGTTATGCTGGGCTTCACAATTATGAAGAAAGTGTCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑Ct                                                                                                                                                                                                        <  2:151703/249‑1 (MQ=255)                                                                     tCGATATGCTGGGCTTCAGCATTATGAAGAAAGTGTCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAAc                                                                                                                                                                                        <  1:544744/249‑1 (MQ=255)                                                                             cTGGGCTTCAGCATTATGAAGAAAGTGTCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGGTGGTTTTTTAAGGG‑CAT‑CCGGGTCCGGGACATGCGGAATGTG‑A‑TGG‑GTCATCCGCG‑CTG‑CCG‑CCGGG‑TAAACT‑GGGAACGTTCCTc                                                                                                                                                                                >  1:421197/1‑249 (MQ=255)                                                                                ggttcagacATTAGGAGGAAGGGTTCTGGTACTTCGCCGTTGTTTTCCGCCTTGCCCCCCGCCCTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑c                                                                                                                                                                           <  2:367375/242‑1 (MQ=255)                                                                                          ttATGAAGAAAGTGTCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGGTGTTTATTTGAGGG‑CAT‑CCGGGTCCGGGAAATGCGGAAAGTG‑A‑TGG‑TCCATACCCG‑CCG‑CCG‑CCGGG‑TAAACT‑GGGAACGTTCCTCCAA‑CC‑GATGaaa                                                                                                                                                                  >  1:483798/1‑248 (MQ=255)                                                                                                agaaAGAGTCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGGGGGTTTTTTAAGGG‑GAT‑CCGGGTCCGGGACAAGGGGAATGTG‑A‑TGG‑TCCCTCCGCG‑CTG‑CCC‑CTGGG‑CAAACT‑GGGAACGGTCCTCAAG‑CA‑GAAGGAAACGGTtga                                                                                                                                                          >  1:464758/1‑250 (MQ=255)                                                                                                        tCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTgg                                                                                                                                                 <  1:711372/250‑1 (MQ=255)                                                                                                                        tGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGGCGTTTTTTTAAGCG‑CAT‑TCCGGGCCGGAAACAGCCGAATGGG‑ATTGT‑TCCTCCCCCC‑CCG‑CCC‑CTGGT‑TAAACG‑GGACACGTT‑CTCCAA‑CC‑GAAGAAAACGGTTGGTGA‑TCTGGTGAAAGGGTTCgcag                                                                                                                                  >  2:328740/1‑249 (MQ=255)                                                                                                                            tttCGGCGGGACCCTCGCACTGCAATGCCGCGTTCCGTTTGGCGCATCTTCCGGTGTTCGTCGTGCTCAGGTGGCTGAGTTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACt                                                                                                                              <  1:590898/249‑1 (MQ=255)                                                                                                                            tttCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGGCTG‑GCGGGGGGGGTTTTTTGAGCG‑CAC‑CCCGGGCCGGGGCAAGCGGAATGGG‑G‑TGG‑GTCCTCCCCC‑CCG‑CCC‑CCGGG‑CAAACTGGGAACCGTTCC‑CAAA‑CAGGATAAAAGCGATGGGTGT‑TCGGGGGAAAGGTTTCgaaaacgg                                                                                                                              >  2:324458/1‑245 (MQ=255)                                                                                                                                 aCGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGtt                                                                                                                                                                                    <  1:323567/193‑1 (MQ=255)                                                                                                                                 aCGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGGCTG‑GCGGGGGTGTTTTTTTAAGCG‑CAT‑CCGGATCCGGGACAAGCGGAAAGTG‑A‑TGG‑GTCCTCCCCG‑CTG‑CCG‑CTGGC‑TAAAAT‑GGGAACGGTCCTCAAG‑CA‑GATGAAAGCGATTGATGG‑TCTGGTGGAAGGGTTTGAAGAAATGGaaaa                                                                                                                        >  1:84420/1‑247 (MQ=255)                                                                                                                                    tGACCCACGCACTGCAAGGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTGGTGCTCAGGTGGCTGGGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAg                                                                                                                     <  2:783210/250‑1 (MQ=255)                                                                                                                                         cACGCACTGCAATGCCGCGTGCCGTTTGGCGCAGCTTCGGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAga                                                                                                               <  1:635135/250‑2 (MQ=255)                                                                                                                                          aCGCCCTGCAATGCGGTGATCCGTTTGGCGCAGCTGCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTa                                                                                                              <  1:199832/250‑1 (MQ=255)                                                                                                                                           cGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTaa                                                                                                             <  1:348059/250‑1 (MQ=255)                                                                                                                                                   aaTGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCGGGTTTTTGATGCGCCCA‑CCGCACCCGGAAAACGGGGAA‑GTG‑G‑TGGTTCCCTCC‑CG‑CCG‑CCC‑CCGCCGTAAATC‑GGACCCG‑TCCTCAAG‑CA‑GACGAAAGAGGTTGTTGA‑TTTGGGGAGAAGGGTCGAAGAACTGGAGACCAA‑GCAGGAATGtttttt                                                                                                     >  2:701298/1‑250 (MQ=255)                                                                                                                                                   aaTGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGCCGTCGTGCTCAGGTGGCTGAGCTGGCGCGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCtttttt                                                                                                     <  1:101735/250‑1 (MQ=255)                                                                                                                                                      gCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGGGGGTTTTTTAAAGG‑CAT‑ACCGGTCCGGGAAAAGCGGAAAGTG‑A‑TGG‑TGCCTTCCCG‑CCG‑CCG‑CCCGG‑TAAAAA‑GGAACCGCTCCTCAAG‑CA‑GATGAAAACGGGTGATGA‑TCTGGGGGAAGGGTTTGCAGAAATTGGTAACAG‑CAAATAATCttttttttt                                                                                                  >  2:213567/1‑247 (MQ=255)                                                                                                                                                        cgcgATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGGCTG‑GCGGGGGGGGTTTTTTTAACG‑CCT‑CCCGGTCCGGGAAACGCGGAAAGTG‑A‑TTG‑GCCATCCCCG‑CTGCCCC‑CTGCC‑TAACTG‑GGAACCGTT‑CTCCAG‑CA‑GAAGAAAAGGATTTATGA‑TCTGGGGGAAGGGTTTGGAGAAACGGGTACCAGACAGAAAATCttttttcttt                                                                                                 >  2:675038/1‑246 (MQ=255)                                                                                                                                                          cgATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGGGCTCAGGTGGCTGATCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCTTTTTTGC‑TTGaa                                                                                             <  1:283552/250‑1 (MQ=255)                                                                                                                                                              ccGTTTGGCGCAGCTGCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCTTTTTTGC‑TTGAAAAAt                                                                                         <  1:420187/250‑1 (MQ=255)                                                                                                                                                                   tGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGGTGGTTTTTTAAACG‑CAT‑CCCGGACCGGGAAATGCGCAATGGGTA‑TGG‑T‑CATCCCCGCCTC‑CCC‑CTGCC‑CAAA‑T‑GGGACCGTTCCTCCAGCCA‑GATGAAAACGATTGTGTA‑CTTGGGGAAGGGTTTGGAA‑AAATGGATACCCA‑CAAAGAATCTTTTTTTCTTTGAAAATTaaa                                                                                      >  2:779177/1‑249 (MQ=255)                                                                                                                                                                          ggtgccGGTGGTCGTCGTGCGCAGGTGGGTGAGGTGGCAGGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCTTTTTTGC‑TTGAAAAATAAAGTATTAGCg                                                                             <  1:240602/246‑1 (MQ=255)                                                                                                                                                                                                   tGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGGTGTTTTTTTAAAGG‑CATCCCGGACCCGG‑ACATGCGGAAAGTG‑G‑TGG‑GCCCACCCCG‑CCG‑CCG‑CCGGG‑TAAAAT‑GGGAACGGTCCTCCAA‑CC‑AATGAAAACGATTTGTGATTTTGGGGAAGGGTTTGGAAAAAAGGGTAACCAC‑AAAGAAACTTTTTTTTT‑TTGAAAATTAAGAAATTGCGGTTTTGGGTTAAACCttttttattg                                                     >  2:188358/1‑246 (MQ=255)                                                                                                                                                                                                              gCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGGCGCTTTTTTAAACG‑CCT‑CCCGGTCCGGGAAATGCGGAATGGG‑G‑TGG‑GTCATTCCCG‑CTC‑CCGCCGGGC‑AAAACT‑GGACCCTTTCCCCAA‑‑CA‑GGGGAAAACGGTTGATGG‑TATGGGGGAAGGGTTTGAAAAAATGGGTACCAC‑CCAATAAACTTTTTTTT‑TTTTAAAAAAAAGGATTAACGTTCTTCGGTATACCTTTTTTTTTGGGGGGCgggat                                          >  2:104746/1‑246 (MQ=255)                                                                                                                                                                                                                     ccGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCTTTTTTGC‑TTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAg                                  <  1:383781/250‑1 (MQ=255)                                                                                                                                                                                                                                               gCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCTTTTTTGC‑TTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGcc         >  2:64797/1‑250 (MQ=255)                                                                                                                                                                                                                                                   tttATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCTTTTTTGC‑TTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGtt     >  1:767288/1‑250 (MQ=255)                                                                                                                                                                                                                                                     tATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCTTTTTTGC‑TTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTc   >  2:25776/1‑250 (MQ=255)                                                                                                                                                                                                                                                      aTTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCTTTTTTGC‑TTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCTGGTTTCg  >  2:15805/1‑250 (MQ=255)                                                                                                                                                                                                                                                      aTTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCTTTTTTGC‑TTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTc   <  2:133441/249‑1 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                         AGAAGGCGGCAACGAAAAAGTGATTCTTTGCGATCGCGGTGCTAACTTCGGCTATGACAACCTGGTTGTCGATATGCTGGGCTTCAGCATTATGAAGAAAGTGTCTGGTAACTCGCCGGTGATTTTCGACGTGACCCACGCACTGCAATGCCGCGATCCGTTTGGCGCAGCTTCCGGTGGTCGTCGTGCTCAGGTGGCTGAGCTGGCACGAGCCGGTATGGCGGTAGGTCTG‑GCGGGGCTGTTTATTGAAGCG‑CAT‑CCGGATCCGGAACATGCGAAATGTG‑A‑TGG‑TCCATCCGCG‑CTG‑CCG‑CTGGC‑TAAACT‑GGAACCGTTCCTCAAG‑CA‑GATGAAAGCGATTGATGA‑TCTGGTGAAAGGTTTCGAAGAACTGGATACCAG‑CAAGTAATCTTTTTTGC‑TTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCG  >  NZ_CP009273/1264088‑1264581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑