Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 2,319,929 | 0 | T | G | 41.1% | 136.2 / 13.6 | 73 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
Reads supporting (aligned to +/- strand): ref base T (4/39); new base G (30/0); total (34/39) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.66e-16 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GACAGTAATTAAAGCCGCCATTGAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGTAAAGCGGCAGCCGCAATTGAGTCCGGTGCTTTTACA > NZ_CP009273/2319680‑2320178 | gACAGTAATTAAAGCCGCCATTGAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGt < 1:604483/250‑1 (MQ=255) aaaGCCGCCATTGAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGgaaaaa > 1:844557/1‑248 (MQ=255) aaGCCGCCATTGAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAatat < 1:822293/250‑1 (MQ=255) aaGCCGCCATTGAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGagaaaa > 1:441634/1‑247 (MQ=255) ccgccATTGAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAg > 1:926345/1‑250 (MQ=255) cATTGAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCAAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGGTGGGAAATATGAggg > 2:520759/1‑246 (MQ=255) aTTGAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGGGGGGAAAAATGAGGTTAg > 1:70864/1‑250 (MQ=255) ttGAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGCCAGGCGCAGAGCATTGTGGCGGGGGGGGTGGGAAAAATGAGtttgta > 1:664681/1‑247 (MQ=255) tGAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGGAAATATGAGTTTatac > 1:922333/1‑247 (MQ=255) gAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGAGAATATATGTTTAGccc > 2:615832/1‑250 (MQ=255) tGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCACCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGAAGGAGAAAATAAAGTTAGcgccccat > 2:892432/1‑247 (MQ=255) gCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGGGGGGAAAAAAGGGTTTAACCCCCcacc > 2:121498/1‑249 (MQ=255) cAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCtactt < 1:310249/250‑1 (MQ=255) cAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCtactt > 1:291610/1‑250 (MQ=255) cAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGGAAATATTAGTTTAGACCCcttctt > 1:386966/1‑250 (MQ=255) aaTCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGGAAAAATGAGTTTAGCCCCCCCATTACTc > 2:620942/1‑250 (MQ=255) acaacaCGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCaaa < 1:312132/249‑1 (MQ=255) caacaCGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAg < 1:932606/250‑1 (MQ=255) aacaCGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGGTGGGAAATATGAGTTTAAGCCCCTACTTTATCGATGCaaaaa > 1:643353/1‑248 (MQ=255) acGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGGAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACg > 1:923997/1‑250 (MQ=255) cGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGGAAATATGGGGTTAGCCCCCTACTTACTCGATGCAAAAACACGc > 1:890887/1‑250 (MQ=255) atgaAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTgg < 1:556815/250‑1 (MQ=255) gTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGGAAATATTGGGTTTGCCCCCTCCTTACTCTATGCAAAAAAACGCTCTGGTTAtt > 1:776159/1‑249 (MQ=255) tGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCg < 1:50511/250‑1 (MQ=255) tGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTg < 1:733340/249‑1 (MQ=255) ggTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGga < 2:60062/249‑1 (MQ=255) ggTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCAGGAAGAAACGGTGTGCGGATTCACGGAAAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTGGACGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATAAGAGTTTAGCCCCCTACTTACACGATGCAAAAGCACGCTCTGGTTATCGTCTTGga < 1:569462/249‑1 (MQ=255) gTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGAAAAAATGAGGTTTGCCCCCTAATTACTCGATGCAAAAACACGCTCCGGGTATCGTCTTTgaga > 1:213690/1‑250 (MQ=255) tAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGAc < 2:926345/250‑1 (MQ=255) cGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGGTGGGAAATATGAGGTTAGCCCCCTACCTACTCCCTGCAAAAGAACGCTCTGGTTATCGTGTTGGAGACGGa > 2:69717/1‑250 (MQ=255) ttACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAgg < 1:68214/250‑1 (MQ=255) aCAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGGGGGGAAATATTAGTTTTGCCCCCTACTTTCTCGATGCAAAAGAACGCTCTGGTTCTTGTCTTGGTGTAGGG‑CAGGtt > 2:393283/1‑250 (MQ=255) aGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTAt < 1:570447/250‑1 (MQ=255) aGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGGAAAAATGAGGTTAGCCCCCCACTTACTCTGTGCCAAAGAACGCTCTGGTTATGGTCTTTGAGACGGA‑CAGGGTTAt > 2:417159/1‑250 (MQ=255) ccGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGa < 2:202693/250‑1 (MQ=255) ccGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGa < 2:388245/250‑1 (MQ=255) cGGGCTGGGGCAAAATCCGGCGCGACAGGCGCTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGGAAAAGCACGCTCTGGTTAGCGTCTTGGAGACGGA‑CAGGTTTATGAc < 2:676353/250‑1 (MQ=255) gCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTg < 2:726341/250‑1 (MQ=255) gTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGGTGGGAAAAATGAGGTTAGCCCCCTACTTACTCGATGCAAAAAAACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGGTTATGAAGTAATCCTGCG‑CGGTGGGCTGAt > 2:803821/1‑250 (MQ=255) ttAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCAccc < 2:40035/250‑1 (MQ=255) tgtgCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTAccg‑c < 1:581685/250‑1 (MQ=255) cGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGAAAAAATGTATTTTGCCCCCCACTTTTTCGATGCAAAAACACGCTCTGGTTTTTGGCTTTGAGGCGGACCAGGTTT‑TGAACGAATCCTTCGCCGATGG‑CTGGTGTGGGCCCCCCCAGGTTATTCTAATGGGGTTAccc‑cccg > 2:733258/1‑247 (MQ=255) cGGATTCACGGTCAATAAAGTATGTGGTGCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCGGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTCCCG‑CCGaa < 2:634250/250‑1 (MQ=255) ggATTCACGGTCAATAAAGGATGTGGTTCGGGTATTAAAAGTGGGGCGCTTGCCGCCCAGGCCAGTCAGGCAGGTCAGGCGAAGAGCATTGTGGCGGGGGGTATGGAAAATAGGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGaaa < 2:453963/250‑1 (MQ=255) cACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGGTGGGAAAAATGAGGTTTGCCCCCCACTTACTCGCTGCAAAAACACGCCCTGGTTTTTGTCTTGGGGACGGG‑CAGGGTTATTAAGTCATCCTGCG‑CGGTGGCCTGATGTGCGGCACCCATTGTTATCATTTGGGGGTTAccg‑ccggcaaagtg > 2:260735/1‑242 (MQ=255) aaGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGG‑AAGGGTTATGAAGTAATCCTGCG‑CGGTGGCCTGATGGGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAAAGTGGCTAAagag > 1:481457/1‑248 (MQ=255) aGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCT‑AAGAGTACg < 1:615832/250‑1 (MQ=255) tATGTGGTTCGGGTCTTAAAGGGGTGGCGCTGGCCGCCCGGGCCATTCAGGCAGGTCAGGCGCAGAGCAATGTGGCGGGGGGTAAGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTAGCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCAATGGTAATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACgg < 2:800645/250‑1 (MQ=255) gtgGTTCGGGTCTTAAAAGGGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAAt < 2:335166/250‑1 (MQ=255) tgGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAAtt < 1:450534/250‑1 (MQ=255) ggTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGGTGGGAAAAATGAGTTTAGCCCCCCACTTACCCGATGGAAAAGCACGCTCTGGTTATTGTCTTGGGGACGGA‑GAGGGTTTTGACGTAATACTACG‑CGGTGGCCTGATGTGTGCCACCCATGGGTATCATTTTGGGGGTACCG‑CCGGAAAAAGGGGTAAACAGTAggggagt > 2:44755/1‑245 (MQ=255) ttCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTAcc < 1:121498/250‑1 (MQ=255) ttCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGGGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGGATTAcc > 1:208776/1‑250 (MQ=255) aaaaGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAAt < 2:294106/248‑1 (MQ=255) aaaaGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAAt < 1:837164/248‑1 (MQ=255) aGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGGAAATATGAGTTTAGCCCCCCACTTACTCCCTGCAAAAACACGCCCCGGTTATCGTCTTTGTGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCCGCTGTGCGCCACCCCTGGTTATCATATGGGGGTTACCG‑CCGAAAACATGGCTCAAGAGTACGGAATTACCCGTGAAATGCAgg > 2:200031/1‑250 (MQ=255) gcgcTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGGAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGGAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGGTATCATATGGGGATTACCG‑CCGAAAAAGTGGCTAAAGAGTACGGGATTAACCGTGAAATGCAGGATGaaa > 1:830453/1‑249 (MQ=255) cTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGGAAATATTAGTTTTGCCCCCTCCTTACTCGATGCCAAAGAACGCTCTGGTTATCGTCTTTGGGACGGG‑CCGGGTTATGTAGTAATTCTGCG‑CGGTGGGCTGATGTGCGCCACCCCTGGGTATCCTATTGGGTTTTCCGCCCGAAAAGGTGG‑TCAAGGGTACGGGAATAACCCTGTAATGTAGGAGGAACTgt > 2:184198/1‑249 (MQ=255) gtGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGgc < 1:647670/249‑1 (MQ=255) gccgccCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTGATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGgcgc < 1:971317/250‑1 (MQ=255) cgccCGGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTa < 2:95114/250‑1 (MQ=255) cgccCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGGATGGGAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGGTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGGTATCATATGGGGGTTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTa > 1:8592/1‑250 (MQ=255) ccAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACAt < 2:62465/250‑1 (MQ=255) ttCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCg < 1:312464/250‑1 (MQ=255) caggcaggTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGt < 2:204484/249‑1 (MQ=255) gcaggTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTGGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGTAAAg < 2:507229/250‑1 (MQ=255) ggCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGTAAAGCGGCAGcc < 2:386966/250‑1 (MQ=255) cAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGTAAAGCGGCAGCCGCaa < 1:88851/250‑1 (MQ=255) gagCATTGTGGCGGGGGGGGTGGGAAATATGAGTTTAGCCCCCTCCTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGGGACGGA‑CAGGGTTATGACGTAATCCTGCG‑CGATGGGCTGATGTGCGCCACCCATGGGTTTCATATTGGGGTTACCG‑CCGAAAACGTGGCTAAAGAGTACGGGATTAACCGTGAAATGCAGGGTGAACTGGCGCCACATTCACAGCGTAAAGCGGccggccgaatt > 2:645866/1‑240 (MQ=255) cATTTTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGTAAAGCGGCAGCCGCAATTGAg < 1:487538/250‑1 (MQ=255) tgGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCCCGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGTAAAGCGGCAGCCGCAATTGAGTCCg < 1:787213/249‑1 (MQ=255) tgGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGTAAAGCGGCAGCCGCAATTGAGTCCg < 2:291610/249‑1 (MQ=255) cGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGTAAAGCGGCAGCCGCAATTGAGTCCGGTGc > 2:205336/1‑250 (MQ=255) ggggTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGTAAAGCGGCAGCCGCAATTGAGTCCGGTGCttt > 1:606843/1‑250 (MQ=255) tATGGAAAATATGGGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGGGACGGC‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTGCCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGTAAAGCGGCAGCCGCAATTGAGTCCGGTGCTTTTACa < 1:565068/250‑1 (MQ=255) | GACAGTAATTAAAGCCGCCATTGAACGTGCAAAAATCGATTCACAACACGTTGATGAAGTGATTATGGGTAACGTGTTACAAGCCGGGCTGGGGCAAAATCCGGCGCGTCAGGCACTGTTAAAAAGCGGGCTGGCAGAAACGGTGTGCGGATTCACGGTCAATAAAGTATGTGGTTCGGGTCTTAAAAGTGTGGCGCTTGCCGCCCAGGCCATTCAGGCAGGTCAGGCGCAGAGCATTGTGGCGGGGGGTATGGAAAATATGAGTTTAGCCCCCTACTTACTCGATGCAAAAGCACGCTCTGGTTATCGTCTTGGAGACGGA‑CAGGTTTATGACGTAATCCTGCG‑CGATGGCCTGATGTGCGCCACCCATGGTTATCATATGGGGATTACCG‑CCGAAAACGTGGCTAAAGAGTACGGAATTACCCGTGAAATGCAGGATGAACTGGCGCTACATTCACAGCGTAAAGCGGCAGCCGCAATTGAGTCCGGTGCTTTTACA > NZ_CP009273/2319680‑2320178 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |