Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092733,199,7940CT41.9% 60.1 / 52.7 74intergenic (‑179/‑28)ttdR/ttdADNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha
Reads supporting (aligned to +/- strand):  ref base C (5/38);  new base T (31/0);  total (36/38)
Fisher's exact test for biased strand distribution p-value = 5.66e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AAACTCCCGCTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAG  >  NZ_CP009273/3199548‑3200037
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                          
aaaCTCCCGCTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCa                                                                                                                                                                                                                                                         <  2:535897/249‑1 (MQ=255)
         cTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACa                                                                                                                                                                                                                                              <  2:550993/250‑1 (MQ=255)
           gtgAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGGATTTTTTTATACAAAAACaa                                                                                                                                                                                                                                             >  2:917902/1‑249 (MQ=255)
                 gATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGAATTTTTCCAACAAATAACAAAAATgg                                                                                                                                                                                                                                      >  2:149452/1‑250 (MQ=255)
                  aTTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGa                                                                                                                                                                                                                                    <  2:275846/250‑1 (MQ=255)
                      cttccAGTACCTGCAAGTCTTTGGCTAAAGACCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGTCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGtt                                                                                                                                                                                                                                 <  2:933219/246‑1 (MQ=255)
                         ccAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTg                                                                                                                                                                                                                                <  1:237821/247‑1 (MQ=255)
                         ccAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTg                                                                                                                                                                                                                                <  2:472991/247‑1 (MQ=255)
                           aGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatg                                                                                                                                                                                                                           <  2:520947/250‑1 (MQ=255)
                            gTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatga                                                                                                                                                                                                                          <  2:649190/250‑1 (MQ=255)
                              aCCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAATAAAAAAACTTGAGATGCCatgat                                                                                                                                                                                                                         >  1:762664/1‑249 (MQ=255)
                                             gCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAg                                                                                                                                                                                                         <  1:728655/250‑1 (MQ=255)
                                               tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTTAAAAAAAAAAAAAAAATGGAAGTTGCCTGATGAGGGGAAGaaataaaa                                                                                                                                                                                                        >  2:237999/1‑247 (MQ=255)
                                                  aGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACa                                                                                                                                                                                                    <  2:594214/250‑1 (MQ=255)
                                                   ggCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCTGACAAAAACAAAAAAATGAGTTGGCCTGATGAGCGGAAGaaataaaaaaa                                                                                                                                                                                                     >  2:258105/1‑243 (MQ=255)
                                                    gCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTTCGAAAAATAAAAAAACAGGAGTTGCCCTGTTGAGCGAAAGTAATAAACaaaaag                                                                                                                                                                                                  >  1:526909/1‑246 (MQ=255)
                                                      cAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTTACACAAAAAACAAAAATAGAGTTTGCATTGTGTGTGGAAGTAATAAACaaaaac                                                                                                                                                                                                  >  2:404040/1‑244 (MQ=255)
                                                            ttCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGGTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGAATTTTTTTGAAAAAAACAAAAAATGGAGTTGTCATTGCTAGGGAAAGAAATAAACaaaaaacagt                                                                                                                                                                                              >  2:453151/1‑238 (MQ=255)
                                                              cAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATa                                                                                                                                                                                         <  2:652493/249‑1 (MQ=255)
                                                               aGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTTGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATaa                                                                                                                                                                                        <  1:666550/249‑1 (MQ=255)
                                                               aGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAATACAAAAAAAGGAGTTGCTCTGATGAGAGAAAGTGATAAACAAAAAGCAGAGAGTAAg                                                                                                                                                                                       >  2:126382/1‑250 (MQ=255)
                                                                gCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGt                                                                                                                                                                                      <  1:640045/250‑1 (MQ=255)
                                                                     gTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCTCACAAAAAAAAAAAACTGAGTTGCCACTATGATGGAAAGTAAAAAAAAAAACGCCGCGAATAAgattct                                                                                                                                                                                  >  1:109282/1‑244 (MQ=255)
                                                                             tCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAAAAAAAAATGGAGTTGCCATGATGGGCGAAAGTAAAAAACAAAAAGAAGGGAATAAAATGACAGAGATTGt                                                                                                                                                                        >  1:364553/1‑250 (MQ=255)
                                                                             tCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGt                                                                                                                                                                        <  2:150037/250‑1 (MQ=255)
                                                                              ccGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGTTGCCATGATGAGGGAAAGTAATAAGCAAAAAGCAGGGAAAAAGATGACAGAGATTGTc                                                                                                                                                                       >  1:743785/1‑250 (MQ=255)
                                                                                      gtgATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACt                                                                                                                                                                <  2:464905/249‑1 (MQ=255)
                                                                                       tgATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACttt                                                                                                                                                              <  1:373234/250‑1 (MQ=255)
                                                                                        gATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTa                                                                                                                                                            <  2:442200/250‑1 (MQ=255)
                                                                                            aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCg                                                                                                                                                         <  1:713754/249‑1 (MQ=255)
                                                                                                    gtATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTTATAAAAAAACAAAAAAAGGAGTTTGCATGATTAGCGGAAGTAATAAAAAACAAGCAGTGAAAAAGTTGAAAGAGATTGTCACTAAATTTACCCACATTAttt                                                                                                                                                >  2:308355/1‑250 (MQ=255)
                                                                                                          cGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATGGAGGTGCCATGATGAGCGAAAGTAATAAACAAAAGGCAGGGAAAAAATTGGAAGAGATTGTCGCTAACTTTACCCCCATGATTTTTAacc                                                                                                                                          >  1:364634/1‑250 (MQ=255)
                                                                                                             aaaaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCACACAAAAAAAAAAACTGTAGATTGCATGATGTGCGGAAAAAAAAAGAGAAAAACAGTGGAAAAAATGGCAGAGATTGTGGATAAAATTACCCCCCTGAttttttacc                                                                                                                                          >  2:229710/1‑241 (MQ=255)
                                                                                                              aaaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCTGACAAAAAAAAAAAATGGAGTTGCCATGATGAGAGAAAGTAATAAAAAACAGGCAGTGAATAAAATGAAAGAGATTGTCGCTAACTTTATCGCCCTGATTTTTACCCGAAt                                                                                                                                      >  1:422579/1‑250 (MQ=255)
                                                                                                               aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCACACAAAAAAAAAAAAAGGAGTTGCCATTATGAGGGGAAAGAATAAGAAAAAAGAAAGGAATAAAATGACAGAGATTGTCGCTAAATTTTACGCCCAGAttttttaccccatg                                                                                                                                     >  2:692358/1‑239 (MQ=255)
                                                                                                                    tcccATCCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCTTTGATCCACGAACTGTTAATTACATATTCACGGTGGAAAAAAAAATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAAAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGAAATAAGCAACAGGTAGTGAATAAGTTGACAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtg                                                                                                                                 <  2:954602/247‑1 (MQ=255)
                                                                                                                          tCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGAGGATTTTTTTAAGACAAAAAAAAAAACAGGGGTGGCACGATGTGGGGAACAAAACAACAACACGCACTGAAAAAAATGCAACAGAGTGTTGCGCACCTTTCCGCCCAGATTTTTACCCGGATgacaccgaacgg                                                                                                                          >  2:894850/1‑239 (MQ=255)
                                                                                                                          tCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCCGAAAAAAACAAAAAATGGAGTTGGCATGATGAGCGGAAAGAATAAACAAAAGGGAGTGGATAAATTTACAGAGATTGTCGCTAACTTTTACGCCATGATTTTTACCCGAAAGCCTGATGACgt                                                                                                                          >  1:843575/1‑250 (MQ=255)
                                                                                                                           cccTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgt                                                                                                                          <  1:245504/249‑1 (MQ=255)
                                                                                                                                ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCCAACAAAAAAAAAAACTAGAGGTTCCCTGATGAGCGAAAAAAATAAAAAAAAAGCAGGGAATAAGATGAAAGAGAATTTAGCTAACTTTACCCCCCGGAATTTTACCCCACAACCCGATGAAGtgggggg                                                                                                                    >  2:703540/1‑249 (MQ=255)
                                                                                                                                   tGGCGAATTATTCATTATTATTTTGGTTTTAATTCAAGAATTTTAAAGTAAATATGCAGGGTGAAAAAAAATAAAAAACCGAATTTTTAGTGGTAGTTTGTGGTGGTGAATTTTTCCAGAAAAATAAAAAAATGGGAGGGGCCATGTGGAGGAAAAGAAAAAAGCAACGGGCAGTGAAAAAGTTGAAAGAGATTGCGGTAAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATaa                                                                                                                 <  2:383515/250‑1 (MQ=255)
                                                                                                                                      cccAATATTATTTCTTATTTTCGCGTTAATTCCCGAATTGTTAATTAAATTTTCACGGTGACAAAAAATATAAAACCACATTTTTAGTGGTATTTTGTGGCGGTGAATTTTCCCAGAAAAATACAAAAACTGGAGTTGCAATGATGAGCAAAAGAAATAAGCAACAGGCAGTAAATAATTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACt                                                                                                              <  2:949060/248‑1 (MQ=255)
                                                                                                                                         aaTATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATGGGGTTGCCATGATGAGGGAAAGGAATAAACAAAAGGCAGGGGATAAAGTTAAAGAGAATGTCGCTAAATTTAACGCCCTGATTTCTACCCGAAAGCCTGATGACGTGGTGGGTAAAATaa                                                                                                            >  1:129560/1‑249 (MQ=255)
                                                                                                                                            attcattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATGGAGGTGGCCTGATGAGCGAAAGAAAAAAACAAAAGGCAGGGAATAAAGTGAAAGAGAATGTAGCTAACTTTACCGCCATGATTTTTACCCCAATGCCTGATGACGTGGGGGAtaaaataaaaa                                                                                                         >  1:631404/1‑248 (MQ=255)
                                                                                                                                                attcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGACAAATACAAAAAATTGAGTTGCCCTTATGGGCGAAAGAAATAAGCAACAGGCAGGGAAAAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTTTACCCCAAAGCCTGATGACGGGGTGGGtaaaataaaaaaact                                                                                                     >  1:932869/1‑244 (MQ=255)
                                                                                                                                                 ttcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAAAGGGGGTTGCCTGGTTAGCGGAAGGAATAAACAACAAGGAGGGGATAAAATGACAGAGATTGTTGCTAAATTTTACGCCCCGATTTTTTTCCCAATGCCCGGTGGAGGGGGGGGTAAACTaaaaaaaata                                                                                                    >  1:9683/1‑243 (MQ=255)
                                                                                                                                                    ttATTTTGGGTTTAATCCACGAACTGTTAATTCCTTATTCACGGTGGCAAAAAAAATAAAACCACATTTTTAGTGGTTGTTTGTGGGGGTGAATTTTGCCAGAAAAATAAAAAAACGGGAGTTGCCATGATGAGCGAAAGAAATAAGCAACAGGCAGTGAATAGGTTGACAGAGATTGTCGCTATTTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAg                                                                                                 <  1:807051/249‑1 (MQ=255)
                                                                                                                                                               ttGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGGGGCGGTGAATTTTCCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcg                                                                                     <  1:804100/250‑1 (MQ=255)
                                                                                                                                                                  aTTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTTAGAAAAAAAAAAAAAATGGAGGTTTCATGATGGGGGGAAGTAAAAAAAAAAAAGGAGGGAAAAAAATGAAAAAGAATGTGGCAAAATTTACCCCCATGATTTTTATCCCAAAACCGTATGAAGTGGGGGGTAAAATCAAAAAACAAAAAGGAGCCGAAAcggag                                                                                  >  2:503324/1‑247 (MQ=255)
                                                                                                                                                                  aTTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAATACAAAAAATGGAGTTTCCCTGATGAGGGGAAAAAATAAACAAAAAGGAGAGAATAAATTTACAGAGATTGTGGCTAACTTTAACCCCCTGATTTTTTCCCCAATGCCTGTTTACGTGGGGGGTAAACAAAAAAAAACAAAAGAAGACGAAAcgtcg                                                                                 >  1:515984/1‑250 (MQ=255)
                                                                                                                                                                        gacttGTTAATTACATATTCACGGGGGAAAAAAAAAAAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGATTTTTCCCAGACAAATACAAAAACGGGAGGTGCAATGATGAGAGAAAGTAATAAGCAACAGGAAGTGAATAAGTTGACAAAGATTGTCGCTATCTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATg                                                                          <  1:767305/246‑1 (MQ=255)
                                                                                                                                                                               tAATTACATATTCACGGTGGCAAAAAATATAAACCCACATTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCCAGAAAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGaaa                                                                    <  1:94863/249‑1 (MQ=255)
                                                                                                                                                                               tAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCCAGAAAAATACAAAAACGGGAGTTGCCAGGATGAGCGAAAGTAAAAAGCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGaaa                                                                    <  1:509225/249‑1 (MQ=255)
                                                                                                                                                                                aaTTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTTTGGCGGTGAATTTTTCCAGAAAAATAAAAAAACTGGAGTTGCCATGAGGAGGAAAAGTAATAAGCAACAGGCAGTAAATAATTTAACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGaaaa                                                                   <  1:739360/249‑1 (MQ=255)
                                                                                                                                                                                 aTTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGGATTTTTTCCAAAAAAAAAAAAAAATTGGGGTTTCCTGGTGGGGGGAAAGAAAAAAACACAAGCAGGGGAAAAGGTGTCAAAAGATGGTGCTAAACTTAACCCCACTATTTTTTCCCCAAATCCTTGTGACGGTGTGGGTGAACAAAAAAAACTAAAAGATGCAGAAACGTACGTGGTGGGGGaaaa                                                                   >  2:573408/1‑249 (MQ=255)
                                                                                                                                                                                     cttatCCACGGTGGAAAAAAAAAAAAACCCACATTTTTATTGGTAGTTGGGGGGGGTAAATTTTCCCAGACAAATACAAAAACGGGAGTTGCCATGATGAGAAAAAGAAATAAGCAACAGGCAGTAAATAAGTGGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATc                                                              <  2:524005/247‑1 (MQ=255)
                                                                                                                                                                                       tatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTTAAAAAAAAAAAAAAAAAGGAGTTGGCCTGGTGTGCGAAAGGAATAAAAAACAGGCAGTGAATAAATTGAAAAAGAGTGTAGGTAACTTTACCCCCCTGATTTTTAACCGAATGCCTGGTTACGTGGTGGGTGAAATAAAAAAACTAAAGGGAGACGAAACAGCGACGGATGGGGGAAAtatatt                                                             >  2:279377/1‑244 (MQ=255)
                                                                                                                                                                                         ttCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTAcc                                                          <  1:258105/249‑1 (MQ=255)
                                                                                                                                                                                           cACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGGTGCCATGATGAGCGAAAGTAAAAAACAAAAAGCAGGGAATAAGTTGACAGAGATTGTCGCTAAATTTATCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAAATTAAAAAGATAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCAt                                                        >  1:130692/1‑249 (MQ=255)
                                                                                                                                                                                            aCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGAATTTTTTCAAACAAAAAAAAAAAATGGAGTTGTCATGATGAGAGAAAGGAATAAACAACAAGCAGAGAAAAAATTGACAGAGATTGTCGCTAACTTTAACGCCATGATTTTTACCCCAATGACTGGTGACGTGGGGGGGAAACAAAAACAGCTAAAGGATGCCGGAACGTCGTCGATGGGGGAAATTATCTaaccaac                                                      >  2:890309/1‑244 (MQ=255)
                                                                                                                                                                                             cGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACGGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTGGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTGAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                     <  1:786910/250‑1 (MQ=255)
                                                                                                                                                                                             cGGTGGCAAAAAATAAAAAACCTCATTTTTAGTGGTAGTTTGGGGCGGTGAATTTTTCCAGAAAAATAAAAAAACTGGAGTGGCCATGATGAGCAAAAGTAATAAGAAAAAGGCAGAAAATAATTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                     <  2:578683/250‑1 (MQ=255)
                                                                                                                                                                                              ggTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGACAAAAACAAAAAATGGAGTTGCCATGATGAGCGAAAGGAATAAACAAAAGGCAGTGAATAAATTGACAGAGATTGTCGCTAACTTTTCCGCCATGATTTTTACCCCCATGCCTGATGACGTGGGGGGTAAACTAAAACAACTAAAAGATGCCGAAAAGTCGTCGATGGGGGAAAATATTTACCATAc                                                      >  1:199176/1‑248 (MQ=255)
                                                                                                                                                                                               ggggaaaaaaaTATAAAACCACATTTTTAGTGGTAGTTGGTGGCGGTGAATTTTTCAAGAAAAATAAAAAAACTGGAGTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTAACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGAt                                                   <  1:390173/245‑1 (MQ=255)
                                                                                                                                                                                               gTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAAAAAAACAAAAAATGGAGGTGCCATGATGAGGGAAAGAAATAAGAAAAAGGCAGAGAAAAAGATGAAAGAGAATGTCGCGAACTTTAACGCCATGATTTTTTCCCCAAAGACCGGTGACGGGGGGGATAAAATAAAAAAGCTAAAAGAGTGCGAAAAGCCGTCGCGGGGGAAAATTATCTACCCTACGAt                                                   >  2:657545/1‑250 (MQ=255)
                                                                                                                                                                                                 ggCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAAAAAAATAAAAAATGGAGGTGCCCTGATGAGCGAAAGTAATAAAAAACAAGGAGGGAAAAAGATGTCAGAGATTGTCGCTAACTCTATCGCCATGATTTCTACCCGAAAGTCTGATGACGAGGTGGATAAACTAAAACAGCTAAAGGATGACGAAAAGTCGTGGATGGGGGAAAATATATCCCATAATATGt                                                 >  1:784254/1‑250 (MQ=255)
                                                                                                                                                                                                   cAAAAAATAAAAAACCAAATTTTTAGTGGTGGTTTGGGGCGGTAAATTTTTCAAGAAAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGAAATAAGCAACAGGCAGTGAATAATTTGACAGAGATTGTCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTc                                               <  2:858601/250‑1 (MQ=255)
                                                                                                                                                                                                     aaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAAAAAAAAAAAAAAATGGAGGTGGCAAGATGAGCGGAAATAATAAACAAAAGGCAGAGAAAAAAATGAAAGAGATTGTTGCTAACTTTACCGCCATGATTTTTACCCCAATACCACAGGGAGGGGTGGGTAAAAACAAACAGCTAAAAGATGGCGACACGTCGTCGATGGGGGAAAATTTCTTCCATAACATATTCg                                              >  2:861706/1‑249 (MQ=255)
                                                                                                                                                                                                     aaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTTAAACAAAAAAAAAAAAATGAGGTGGCATGATGAGGGAAAGGAATAAAAAACAAGCAGAGAATAAATTGACAGAGATTGTTGCTAACTTTAACGCCCTGATTTTTTTCCGCAAGCCTGATGACGTGGGGGGTAAAATAAAACACCTAAAAGAAGCCGCAACGTCGTCGCGGGGGGAAATTATATACACTACAATTTTcca                                             >  2:465669/1‑248 (MQ=255)
                                                                                                                                                                                                                   acaTTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAg                               <  1:811112/250‑1 (MQ=255)
                                                                                                                                                                                                                     aTTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGAAAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCg                             <  1:851181/250‑1 (MQ=255)
                                                                                                                                                                                                                       ttttAGGGGTAGTTTGGGGCGGTGAATTTTACCAAACAAAAACAAAAACTGGAGTTGCAATGATGAGCAAAAGTAAAAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCg                             <  2:470774/248‑1 (MQ=255)
                                                                                                                                                                                                                                        ggCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAAAATGCAAAAAGGGATTGAGCTGAATCGTcctg          >  1:389315/1‑250 (MQ=255)
                                                                                                                                                                                                                                                     tttttCCAAAACAAATACAAAAATGGGAGTGACAATTATGAGAAAAAGAAATAGGAAACAGGAATGAAAAAAGTTGACAGAAATTTTCGTAACTTTAACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAAACGTCCTGCCTGTCAg  <  2:793711/250‑1 (MQ=255)
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                          
AAACTCCCGCTGTGAACGATTTCTACCAGTACCTGCAAGTCTTTGGCTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAG  >  NZ_CP009273/3199548‑3200037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: