New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3416707	55 (0.670)	3 (0.140) +AGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCA	3/128	4.5	17.4%	intergenic (+154/+77)	yhdZ/rrf	amino acid ABC transporter ATP‑binding protein/5S ribosomal RNA
	?	NZ_CP009273	3416709 =	55 (0.670)					intergenic (+156/+75)	yhdZ/rrf	amino acid ABC transporter ATP‑binding protein/5S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACC  >  NZ_CP009273/3416464‑3416951                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                       gAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGgaga                                                                                                                                                                                                                                                  <  2:122796/250‑1 (MQ=255)  aaaTAGTGTGGCAAGCTGCACCTTATGAATTTTTTGCGCATCCTAAATCAGAGTGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTCCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGACCTACTCGGGagag                                                                                                                                                                                                                                                 <  2:24946/250‑1 (MQ=255)       gTGGAGCAAGCTGCGCCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTc                                                                                                                                                                                                                                            <  2:637034/250‑1 (MQ=255)                    cACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAaacaac                                                                                                                                                                                                                              <  1:186067/250‑1 (MQ=255)                          atgaATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCA‑TTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATaaa                                                                                                                                                                                                                       <  1:361126/250‑1 (MQ=255)                                    tGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAgg                                                                                                                                                                                                               <  2:357811/249‑1 (MQ=255)                                                    gagCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGa                                                                                                                                                                                              <  1:524545/250‑1 (MQ=255)                                                                gCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtttt                                                                                                                                                                                  <  2:436656/250‑1 (MQ=255)                                                                gCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtttt                                                                                                                                                                                  <  1:437322/250‑1 (MQ=255)                                                                      ttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTg                                                                                                                                                                             <  1:619313/249‑1 (MQ=255)                                                                            cAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCTCCCCCCCCCCCCCCGGGCCGTT‑CTTCTCAACCGTTAAAACCGCCCCCCGCGGGATTGTTCTTCCCCGGGGGGGGTTTTCCCACCCAAAAACAACAAAAAAAAAAACACCAGCCTTCCAACTGACCCTtttttttttttttttgttt                                                                                                                                                                       >  2:608850/1‑243 (MQ=255)                                                                                tAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGG‑CCTGCCCCCCCCCCCCCCGGCCGTTGCTTCGCCACGTTTAAATTCGCCCCCCGCGGGTTTTTTCTTCTCCTGGGAGGGTTTACCGC‑CAAACAACAGATAAAAAAAAAAACCCCAGCTTCCGACCTAGCCTtttttttttttttttttttgtcgg                                                                                                                                                                  >  2:189625/1‑238 (MQ=255)                                                                                               aTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCa                                                                                                                                                  <  2:325619/250‑1 (MQ=255)                                                                                               aTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCa                                                                                                                                                  <  1:361472/250‑1 (MQ=255)                                                                                                    aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATggg                                                                                                                                              <  2:188566/249‑1 (MQ=255)                                                                                                              gCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCcaca                                                                                                                                   <  2:304114/250‑1 (MQ=255)                                                                                                              gCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCcaca                                                                                                                                   <  1:189117/250‑1 (MQ=255)                                                                                                                aaaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCCGCCCCCCCCCCCCCCGGCCGGTGCTTTGCAACCGTTAAATCCGCCCCCCGCGGGGTTGTTCTACCCCGGAGAGGGGTTACCGA‑CAAACAAAAGAAAAAAAAAAAAACCCAGTCCTCCGGCTGAGCCCTTTTTTTTTTTTTTTGTTTTGGCGGTT‑CCTTCCCTCGCCTgggggggacccccccc                                                                                                                                 >  2:272458/1‑238 (MQ=255)                                                                                                                   aaGGCCATCCTTTCGGATGGTCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGG‑CCTGCCCCCCCCCCCCCCGGCCCCTGCTTTCCCACGCTCAAATCCCCTCCCCCCGGGGTTGTCCTTCTCGGGGGAGTGTTTTCCGC‑CAAACAACAAATAAAACAAAAAACCCAGACCTCCCACTGAGCCTTTTTTTTTTTTTTTTG‑TTTTGCCGTTTCCTACTCTCCCCTGGGGGGGccccccccacac                                                                                                                              >  2:187962/1‑242 (MQ=255)                                                                                                                   aaGGCCATCCTTTCGGATGGCCTTTCGCTGGATTTGATGTGTGGCAGTTTATGGCGGGCGT‑CCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTAcc                                                                                                                              <  2:631123/250‑1 (MQ=255)                                                                                                                       ccATCCTTTCGGATGGCCTTTCGCTTGATTTGAGGTCTGGCAGTTTAGGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCg                                                                                                                          <  2:206925/250‑1 (MQ=255)                                                                                                                            atttCGGAGGGGCTTGTGCTTGATTTGATGTCGGGCAGTTTGTGGCGGGCGT‑CCTGCCCGGCGCCCGCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCGCAGTCTTCCGACTGAGCCTTGTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCt                                                                                                                     <  2:746204/249‑1 (MQ=14)                                                                                                                                cGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACg                                                                                                                  <  1:547779/249‑1 (MQ=255)                                                                                                                                      gCCTTGCGCTTGATTTGATGTCGGCCGTTTTAGGGCGGGCGG‑CCTGCCCGCCGCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTc                                                                                                           <  2:377848/250‑1 (MQ=255)                                                                                                                                                      gatGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGc                                                                                            <  1:19367/249‑1 (MQ=39)                                                                                                                                                       atGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCAt                                                                                          <  2:691757/250‑1 (MQ=39)                                                                                                                                                                aagttATGGCGGGTCT‑CCTGCCCGCCACCCTCATGGCCGTTGCTGCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCATTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTGCTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAgg                                                                                 <  2:397612/247‑1 (MQ=255)                                                                                                                                                                        gcgggcgT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGacca                                                                         >  2:597823/1‑250 (MQ=38)                                                                                                                                                                            ggcccccggcccgcccCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACcg                                                                      <  2:481140/242‑1 (MQ=255)                                                                                                                                                                                   tGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACt                                                               >  1:644450/1‑250 (MQ=38)                                                                                                                                                                                       cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTgccg                                                           <  1:789271/250‑1 (MQ=38)                                                                                                                                                                                            cccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGa                                                      <  1:703828/250‑1 (MQ=38)                                                                                                                                                                                                    gCCGTTGTTTCGCAACGTTCAAATCCGCTCCCTGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAATGCCCAGTCTTCCGACTTAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCt                                              <  2:389117/250‑1 (MQ=255)                                                                                                                                                                                                     ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCtt                                             <  2:587461/250‑1 (MQ=40)                                                                                                                                                                                                     ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCtt                                             <  1:518892/250‑1 (MQ=40)                                                                                                                                                                                                      cGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCttt                                            >  1:415102/1‑250 (MQ=40)                                                                                                                                                                                                       gTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCtttt                                           <  1:64832/250‑1 (MQ=40)                                                                                                                                                                                                               gCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTatcaga                                   >  2:593655/1‑245 (MQ=9)                                                                                                                                                                                                                  aCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGcc                                 >  1:60545/1‑249 (MQ=255)                                                                                                                                                                                                                    gTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGaa                              >  1:140738/1‑250 (MQ=255)                                                                                                                                                                                                                        aaaTCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTATCCTGCCGCACtt                           >  2:721525/1‑249 (MQ=255)                                                                                                                                                                                                                        aaaTCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACttt                          <  1:500239/250‑1 (MQ=255)                                                                                                                                                                                                                        aaaTCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACttt                          <  1:754333/250‑1 (MQ=255)                                                                                                                                                                                                                        aaaTCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACtt                           <  1:445579/249‑1 (MQ=255)                                                                                                                                                                                                                        aaaTCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTGTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAGCTGCCGAACttt                          <  2:648978/250‑1 (MQ=255)                                                                                                                                                                                                                          aTCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTaa                        <  1:209666/250‑1 (MQ=255)                                                                                                                                                                                                                             cGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAAcc                      <  1:666141/249‑1 (MQ=255)                                                                                                                                                                                                                             cGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAAcc                      <  1:109214/249‑1 (MQ=255)                                                                                                                                                                                                                                    ggcggATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAgt              <  2:284250/250‑1 (MQ=255)                                                                                                                                                                                                                                       ggATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAgtggt           <  1:608850/250‑1 (MQ=255)                                                                                                                                                                                                                                             gTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGGCAAATTCTTTTCTAACCTGCCGATCTTTAGCCTaaatcttgtctgtgt      >  2:555417/1‑237 (MQ=255)                                                                                                                                                                                                                                                cTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATAc   <  2:365618/249‑1 (MQ=255)                                                                                                                                                                                                                                                cTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAACCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATAcc  >  1:475321/1‑250 (MQ=255)                                                                                                                                                                                                                                                  aCTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTATTCTGCCGAACTTTAACCTAAAAAGAGGTGATGATAcg  >  2:471787/1‑247 (MQ=255)                                                                                                                                                                                                                                                  aCTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGAGGTGCTGATAcc  >  1:461013/1‑248 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                       GAAATAGTGGAGCAAGCTGCACCTGATGAATTTTTTGCGCATCCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGA‑CAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATG‑TCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACC  >  NZ_CP009273/3416464‑3416951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.