Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 2,369,318 | 0 | A | C | 35.2% | 133.9 / 10.7 | 71 | W42G (TGG→GGG) | menC | o‑succinylbenzoate synthase |
Reads supporting (aligned to +/- strand): ref base A (29/17); new base C (0/25); total (29/42) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.74e-08 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TATCTGCAAGTTTGAGGATCAGATCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAACAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCC > NZ_CP009273/2369072‑2369566 | tatCTGCAAGTTTGAGGATCAGATCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCAccc < 1:380914/250‑1 (MQ=255) cAAGTTTGAGGATCAGATCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTcgcg > 2:500321/1‑250 (MQ=255) cAAGTTTGAGGATCAGATCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTcgcg > 2:787064/1‑250 (MQ=255) cAAGTTTGAGGATCAGATCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTcgc < 1:712699/249‑1 (MQ=255) cAAGTTTGAGGATCAGATCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTc < 1:143580/247‑1 (MQ=255) cAAGTTTGAGGATCAGATCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAAGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTc < 1:149308/247‑1 (MQ=255) tttGAGGATCAGATCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCg < 2:351447/250‑1 (MQ=255) gAGGATCAGATCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCt > 1:534207/1‑250 (MQ=255) gATCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAg < 2:282676/250‑1 (MQ=255) tCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAgg > 1:2680/1‑249 (MQ=255) ggATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACAt < 1:176424/250‑1 (MQ=255) gCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATaacgc > 1:463182/1‑246 (MQ=255) atgacgtcgCGGTGCCACACGGTAGTTGGGCGCGTGCGGCACCGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCg < 2:693700/242‑1 (MQ=255) tACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCT‑CCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTcg > 1:387626/1‑250 (MQ=255) ggTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAAGCAAACATACAGCCCGTCGCGGGttt < 2:176421/250‑1 (MQ=255) tGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGtttt > 1:273372/1‑249 (MQ=255) ccGCACGGGAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTaa < 2:152850/250‑1 (MQ=255) gTTGCCTGCTTGCGCAAACTTTTCTGTCAGTTCGCCCAATGCCCACCTTCCGCCAAAGGCCACGGAAGGCATCTGCGGTACCCCGCAA‑CCGCCTGCCAGCCAGTTATTTCCCCAGGCAAGCAGCCCAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACGGAA‑GCC‑C‑GGCA‑GTGGGGAGATCCCCCCCCCCCCTCCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGTTTTTTAACCGCCTGTc < 2:296389/249‑1 (MQ=255) tGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAacca > 1:783508/1‑250 (MQ=255) gCGGAAACGTATCTGTCAGTTCTGCCAATGCACAGCTTCCGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAacc < 1:644370/248‑1 (MQ=255) cAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCAccccc > 1:585258/1‑250 (MQ=255) gTATCTGTCAGTTCTGCCAATGCACAGCTTCCGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTCCCCAGGCAAGTAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCCCCCCCCCCCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGt < 1:163199/250‑1 (MQ=255) gTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGt > 1:715934/1‑250 (MQ=255) aTCTGTCTGTTCTCCAAATGCACACTTTGCGCCAAGGGCCGCGGAAGGCATCGGCGGTAGCTCCAAA‑CCCCCGCCCAGCCTTTTATTTACCCAGGCAAGCGCCACTC‑TTG‑GCGCCTCTCCCCAGGTTTCCTGCGGGAG‑CCC‑C‑GGCG‑GGGGGGAGACCCCCCCCCCCCCTTCCCGCTCGCCTCCGCGCAGCCAAACATACCCCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTc < 2:383204/249‑1 (MQ=255) tCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCGGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTCCCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCCCCCCCCCCCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATggg < 1:492283/250‑1 (MQ=255) gTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGAt > 1:192619/1‑250 (MQ=255) tCTGCAAAGCCACAGCTTCCGCCAAGGCCCGCGGAGGGCTTCTGCGGTAGCTCGCAA‑CCCCCTGCCCGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTG‑GCGCCTCTCCCCAGGTTTCCGGACTGAA‑GCC‑C‑GGCG‑GGGGGGAGATCCCCCCCCCCCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGGCGCGGGTTTTAAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATc < 2:512057/249‑1 (MQ=255) cgcccAATGCACCCCCTCCGCCAAAGGCCCCGAAGGGCATCTGCGGTAGCCCGCAA‑CCGCCTGCCAGCCTGTTATTTCCCCAGGCAAGCAGCACCC‑TTT‑GCCCCTCTCCCCAGGTTCCCGGACTGAC‑CCC‑G‑GGCG‑GGGGGGAGACCCCCCCCCCCCCTTCGCGCGCGCCTTCACGCAGGAAAACATACAGCCCGTCGGGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCt < 2:409066/246‑1 (MQ=255) caacgccacaGCTTCCCCCAAAGCCCCCGGAAGCCATCGGCGGTACCT‑GCAACTCGCCTGCCCGCCAGTTATTTCCCCAGGCAAGCAGCCCTC‑TTT‑GCGCCTCTCCCCAGTTTCCCTGACTGAA‑GCC‑C‑GGCG‑GTGGGGATATCCCCCCCCCCCCTCCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGGCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGc < 2:672588/242‑1 (MQ=255) accacgctatACGCAAAAGCCCGGGTAAGCCATTGGCGGTAGCTCGCAA‑CCCCCTGCCACTGAATTATGCCCCCAGGCATCCTGCACAC‑TTG‑CCGCCTTTCCCGAGGTTTCCTGACT‑AA‑GCC‑CGGGCA‑GTGGGGAGCCCCCCCCCCCCCCTTCGCGCCCCCCTTCACGCAGCCAACCATACGGGCCGTCGGGGTTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCgg < 2:735917/241‑1 (MQ=255) acaGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGta > 2:720394/1‑249 (MQ=255) tACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTgc > 1:512775/1‑250 (MQ=255) aCGCAAAGGGCCACGGAAGCCTTCGGCGGTACCTCCCAA‑CCGCCTGCCAGCCAGTTATTTCCCCAGGCAAGCAGCACAC‑TTT‑GCCCCTCTCCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGCTCTCCCCCCCCCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGGGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTg < 2:180853/248‑1 (MQ=255) gCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTgcgcg > 1:240479/1‑250 (MQ=255) aaaGGCCCCGGAAGGCTCCGGCGGTCGCCCCCAA‑CCCCCTGCCAGCCAGTTATTACCCCAGGCAAGCAGCCCAT‑TTT‑GCCCCTCTTCCCAGTCTTCCTGACGGAC‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCCCCCTTCGCGCCCGCTTTCACGCGGGAAAAAATACAGCCCGTCGGGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTa < 2:442856/250‑1 (MQ=255) aaaGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTa > 2:122603/1‑250 (MQ=255) gCCACGGAAGGCATCTGCGGTAGCCCGCAA‑TCGCCTGCCAGCCATTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCCCCCTTCGCGCTCGCCTTCACGCAGGCAAACATACACCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCa < 1:131905/250‑1 (MQ=255) gCCACGGAAGGCACCTGCGGTAGCGCGCAA‑TCGCCGCCCAGCCAGTTATTCCCCCAGACAAGCAGCACAC‑TTT‑GCGCCTCTCCCCAGGTTTCCTGACTGAG‑CCC‑C‑GGCA‑GGGGGGAGACCCCCCCCCCCCCTCCCCGCCCGCCTCCCCGCAGGAAAAAAAACACCCCGCCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCa < 2:90616/250‑1 (MQ=255) cACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCCCCCCCCCCCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCAtt < 1:356098/250‑1 (MQ=255) cGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTCCCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCCCCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTAc < 1:139300/250‑1 (MQ=255) cGGAAGGCATCTGCGGTAGCTCGCAA‑CCGCCTGCCAGCCAGTTATTTCCCCAGGCAAGCAGCACCC‑TTT‑GCGCCTCTCCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCCCGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTAc < 1:591955/250‑1 (MQ=255) ggAGGGCATCGGCGGTGCCCCGCAC‑CCGCCTGCCGGCCATTTATTTCCCCAGGCAAGCAGCACCC‑TTG‑GCGCCTCTCCCCAGTTTTCCTG‑CCGGA‑GCC‑C‑GGGAGGGGGGGAGATCCCCCCCCCCCCTTCGCGCCCGCCTTCACGCAGGAAAACATACACCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACg < 2:298258/250‑1 (MQ=255) ggAAGGCTGCGGCGGTAGTCCGCAT‑TCGCCTGGAGGCCATTTATTTTCCCAGGCAAGCACCA‑AC‑TTTACCGCCCTCCCCCAGTTGTCCTGA‑TGAAGGCC‑C‑GGCA‑GTGGGAAGACTCCCCCCCCCCCTACGCGCGCGCCTTCACGAAGGCAAACAAACAGCCCGCCGCGGGTTTTAAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACg < 2:770594/250‑1 (MQ=255) gCTCGCAA‑TCCCCTCCCAGCCGGTTATTCCCCCAGGCAAGCAGCACGC‑TTT‑GCCCCCCTCCCCAGTTTTCCGGACGGAA‑GCC‑G‑GGCA‑GGGGGGAGACCCCCCCCCACCCTTCGCGCCCGCCTTCACGCAGGAAAACATACGCCCCGTGGGGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTg < 2:224107/250‑1 (MQ=255) cGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGTTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTg < 1:364052/250‑1 (MQ=255) gCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTg > 1:763665/1‑249 (MQ=255) gCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGAAAGCAGCACAC‑TTG‑GCGCCTCTCCCCAGTTTTCCTGACTGAA‑GCC‑C‑GGCG‑GTGGGGAGATCCCCCCCCCCCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCt < 1:605888/248‑1 (MQ=255) aagcGCCTGCCAGCCAGTTATTTCCCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCG‑GTGGGGAGATCCCCCCCCCCCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAg < 1:83108/247‑1 (MQ=255) ccggccagccaGTTATTTACCCAGGCAGGCAGCACCC‑TTG‑GCCCCTCTCCCCAGTTTTCCTGACTGAA‑GCC‑C‑GGCA‑GGGGGGAGATCCCCCCCCACCCTTCGCGCTCGCCTTCACGCAGACAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAgg < 2:30388/247‑1 (MQ=255) tGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCt > 1:252241/1‑250 (MQ=255) cagccagTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GAC‑C‑GGCA‑GTGGCGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGCTTTTAATCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTTCCAGCGGCATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGTTGAAGTCAGGCTGAc > 1:748230/1‑250 (MQ=255) cgccagTTATTTCCCCAGGCAAGCACCCCCG‑TTG‑GCGCCTCTTCCAGGGTTTCCGGCTGGAA‑GCC‑C‑GGCG‑GGGGGGGGACCCCCCCCCCCCCTCCGCCCCCGCCTCCACGCAGGCAACCAAGCAGCCCGGCGGGGGTTTTTAGCCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACg < 2:693394/249‑1 (MQ=255) agcacgTTATTCACCCAGGCAAGCAGC‑CACATTT‑CCGCCTCTT‑CCAAGTTTCCCGTCCGGA‑GCCGC‑GGAG‑GGGGGGACACCCCCCCCCCCCCTCCGCCCCCGCCTCCCCGCGGGAAAACATACCCCCCGCGGGGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACg < 2:410660/245‑1 (MQ=255) cccAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAg > 2:190721/1‑250 (MQ=255) aGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGCAGATCTCCCCCCACCCTTCGCCCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGCCCATGGGGATCTGCCAGCGGTCTACCTGCCCGCCACCCTTTACGGATTCCGTTTGAATTTTCTGAATTCAGGCTGACTGTTCTGGTTTAAGGCg > 2:681981/1‑250 (MQ=255) cAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGACGTCAGGCTGACGTTTCTGGTTGAAGGCGTTg > 2:718913/1‑250 (MQ=255) agcagcCCCC‑TTT‑GCGCCTCTCCCCAGTTTTCCTGACTGAA‑GCC‑C‑GGCA‑GGGGGGAGTCCCCCCCCCCCCCTTCGCGCCCGCCTCCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCg < 2:125910/250‑1 (MQ=255) agcagcACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGc > 2:250016/1‑249 (MQ=255) tCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGGTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGt > 1:224902/1‑250 (MQ=255) ccAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCa > 2:486930/1‑250 (MQ=255) ccAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCCCCCCCCCCCCTCCGCGCTCGCCTCCCCGCAGGCAACCATACACCCCGTCGCGGTTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCa < 1:348934/250‑1 (MQ=255) gTTTCCTGACAGAA‑GCC‑G‑GGAA‑GGGGGGAGATCCCCCCCCACCATTCGCGCGCTCCTTCACGCAGGAAAACAAACAGCCCGTCGGGGTTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGAACTTCCTGACCTTCTTCCGTCATGTa < 2:337304/250‑1 (MQ=255) tttCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCCTg > 2:331115/1‑247 (MQ=255) ttCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGCCCTTCCTGACCTTCTTCCGTCATGTAg > 2:205016/1‑249 (MQ=255) ccggactgaA‑GCC‑C‑GCCA‑GTGGGGAGATCCCCCCCCCCCCTTCGCGCCCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGTTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAAc < 1:654256/247‑1 (MQ=255) ccTGACTGAG‑CCC‑C‑GGCG‑GTGGGGAGCCCCCCCCCCCCCCTCCCCCCTCGCCTCCACGCAGCAAACCATACGCCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGaa < 2:656094/249‑1 (MQ=255) ggagccccccccccACCCTCCGCGCCCGCCTTCCCCCGGGCAAACCTCCGGCCGGCCGGGGTTTTTAAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAACAGCATGGTGGCGTTGCCCGCCa < 2:13557/242‑1 (MQ=255) ggAGATCTCCCCCCCCCCTCCGCCCTCGCCTTCACGCAGGCAAACATACAGCCCGCCGCGGTTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAACAGCATGGTGGCGTTGCCCGCCa < 1:787064/250‑1 (MQ=255) gagaTCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAACAGCATGGTGGCGTTGCCCGCCAg > 1:7309/1‑250 (MQ=255) aTCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAACAGCATGGTGGCGTTGCCCGCCAGCTc > 1:736857/1‑250 (MQ=255) ccccccccccccTCCGTCCCCCCCTTCACGCAGGCAAACATACACCCCTTCGGGGTTTTTTACCCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAACAGCATGGTGGCGTTGCCCGCCAGCTCCt < 2:677212/248‑1 (MQ=255) cACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAACAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGccc > 1:213855/1‑250 (MQ=255) | TATCTGCAAGTTTGAGGATCAGATCGTCCGGATCGCCATTACACAGCGGTGCCGCACGGTAGTTGGCTGCTTGCGGCAACGTATCTGTCAGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAA‑TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACAC‑TTT‑GCGCCTCTTCCCAGGTTTCCTGACTGAA‑GCC‑C‑GGCA‑GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGAAGGCGTTGCGACCTTCCTGACCTTCTTCCGTCATGTAGAACAGCATGGTGGCGTTGCCCGCCAGCTCCTGCAGCCC > NZ_CP009273/2369072‑2369566 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |