| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 5,123 | 0 | C | A | 35.1% | 119.1 / 21.4 | 57 | intergenic (+103/‑111) | thrC/yaaX | threonine synthase/DUF2502 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base C (30/7); new base A (0/20); total (30/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.34e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGG > NZ_CP009273/4875‑5361 | aaTTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATtctc > 1:576044/1‑249 (MQ=255) ttaaaaGAGAGCGGGGAAGCGATTCTCGGTGAAACGTTGGATCTGCAAAAAGAGCTGGCAGAACGTGCTGATTTCCCCTTGTTTTCAAATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AAt < 2:5033/247‑1 (MQ=255) ttAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AAt > 2:493717/1‑249 (MQ=255) aaaGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCCCATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATaaa > 2:385651/1‑250 (MQ=255) ggAAGCGATTCTGGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACtt < 1:475051/250‑1 (MQ=255) ctcGGTGAAACTTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTCCCCTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAg < 1:456624/249‑1 (MQ=255) gTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTg < 1:276029/250‑1 (MQ=255) ccAAAAGAGCTGGCAGAACGGGCTGATTTACCTTTGCTTTCACATAATCGG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATaaca‑a < 2:459103/246‑1 (MQ=255) gTGCTGATTTACCCTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAAtct > 1:134992/1‑250 (MQ=255) gCTGATTTACCCTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTcc > 1:478617/1‑250 (MQ=255) tGATTTACCCTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCg > 1:558719/1‑249 (MQ=255) taTTTGCCCTTGTTTTCCAAAAATCCGCCCCGCGGATTGTGGTGCTTTGCGAAAATTGATGATAAATCATAAAAAAAATCTATTCATTATCTAAATCGGGCGGGTTTTGTTTTTAGGCGGCCCGTTTTTTTAATGAAAAAATTATGGAAAAAAA‑GGAAAGGA‑AAAAAGAAAAATTTCTA‑AATAATTGCGTTAACTAAGAAATTAGGGTTGAGGAAAAAACCA‑ACCGCCGTTCTCATCGAGTAATCTCCg < 2:605160/248‑1 (MQ=255) gATTTACCCTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGa > 1:17947/1‑250 (MQ=255) cccTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGa > 1:197963/1‑250 (MQ=255) ccTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGAc > 1:233681/1‑250 (MQ=255) tCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACg > 2:738823/1‑250 (MQ=255) aTAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGc > 2:553647/1‑249 (MQ=255) tAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCaa > 2:165887/1‑250 (MQ=255) aatccccccGCTGTTTTTGCTGCGTTGCGTAAATTGATGATAAATCATAATTAAAATCTATTCATTATCTCAATCGGGCCGGTTTTGTTTTTATGCAGCCCGGTTTTTTTATAAAAAAATTAGGAAAAAAAA‑TGAAAGGA‑AAAAAGGAAAAATTCAA‑AATAAATGCGGTAATTTAGAGATTAGGATTGGGGAAAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAAt < 1:75020/244‑1 (MQ=255) aTCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAAt > 1:401643/1‑249 (MQ=255) gccgATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAg > 2:610792/1‑249 (MQ=255) gggttgcatAAATGGATAATAAATAATAAAAAAAATTTATTAATTAAATCAATGAGGCGGGGTTTGTTTTTAGGCAGCCGGGTTTTTTTAAAAAAAAATTAGGAAAAAAAA‑GAAAAGGA‑AAAAAGAAAAAATTCTA‑AATAAAGGCGAAAACTAAGAAATTAGGATTGGGAAAAAAAAAA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCtgtg < 2:5212/247‑1 (MQ=255) atatgaggataaATAATAAGTAAAATCTATTAATTAACAAAATAAGGCCGGTTTTTTTTTTATGCAGCCAGTCTTTTTAAAAAAAAAATTAAGAAAAAAAA‑GGACAGGA‑AAAAAGAAAAAATTCAA‑AATAAATGCGTTAATTTAAAAATAGGGATTGGGAAAAAAAAAA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCa < 2:76656/247‑1 (MQ=255) ttGATCATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑ACAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGCTTGCGGAGAATAACA‑ACAGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAACAGGAGTAACATGTGAAACAGATGCAAt > 2:715/1‑250 (MQ=255) tgatgatgaATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATc > 1:29545/1‑250 (MQ=255) aataaaaaatcaGTAAAATCTATTTATTATATAAATCAGGGGGGGTTTGTTTTTATGCAGCCGGTTTTTTTTAAAAAAAAATTAGGAAAAAAAA‑GAAAAGGA‑AAAAAGAAAAAATTCAA‑AAAAAAGGCGATAATTAAGAGATTGGGATGGGGGAAAAAAAAA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATc < 2:301579/242‑1 (MQ=255) atcaacaaaaaaaTCTATTCATTATCTAAATCAGGCGGGTTTTGTTTTTATGCGGCCCGTTTTTTTTAGAAAGAAATAAGGAAAAAAAA‑TGACAGGA‑AAAAAGGAAAAATTCTA‑AAAAAATGGGTTAATTAAGAGATTAGGATGGGGGAAAAAAAAA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACt < 1:227870/241‑1 (MQ=255) tcaGAAAAATCTATTCATTATCTCAATCAGGCGGGTTTTTTTTTTATGCAGCCCTGTTTTTTTATAAAAAAATTAGGGAAAAAAA‑TGAGAGGG‑AAAAAGGAGAAATTCTA‑AAAAAAGGGGGTAATTAAGAAATTAGGATGGCGGAAAAAAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCa < 1:547998/250‑1 (MQ=255) agaaaaaTCTATTCATTATCAAAATGAGGCGGTGTTTGTTTTTATGCAGCCCGGTTTTTTTAAGAAAAAATAAGGAAAAAAAA‑AGACAGGA‑AAAAAGGAGAAATTCTC‑AAAAATTGGGTTAATTTAGAGATTAGGATTGGGGAAAAAAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCAc < 1:407567/246‑1 (MQ=255) ttatttacATTATCTAAATCGGGCGGGTTTTTTTTTTATGCCGCCGTTTTTTTTTATAAAGAAATTATGAAAAAAAA‑TGAGAGGA‑AAAAAGGAAAATTTCTA‑AATAAATGGGGTAATTTAGAGATTAGAATTGGGGAAAAAAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCt < 1:653088/243‑1 (MQ=255) aTCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCt > 1:780428/1‑250 (MQ=255) cTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTgg > 1:219209/1‑250 (MQ=255) aTTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGtt > 1:828/1‑250 (MQ=255) aaTCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAACAGGAGTAACCTGTGACACAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTcc > 2:119557/1‑249 (MQ=255) cAGGCCAGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATg > 2:657423/1‑250 (MQ=255) gcgggttttttttttATGCAGCCCGGTTTTTTAATAAAAAAATTATGAAAAAAAA‑GGACAGGA‑AAAAAGAAAAAATCCTA‑AAAAAAGGGGGTAACTTAGAGTTTAGGATGGCGAAAAAAAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGgca < 1:493717/239‑1 (MQ=255) cgggtttttCTTTTATGCAGCCGGGTTTTTTTAAAAAAAAATTAGGGAAAAAAA‑TGAAAGGA‑AAAAAGGAAAATTTCTA‑AATAAAGGCGGAAATTAAGAGATTAGGATTGGGGAAAAAAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGgcag < 1:771948/245‑1 (MQ=255) ccGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGgcag > 2:535109/1‑250 (MQ=255) gtgtttgtttTAATGCAGCTGTGTTTTTTTA‑AAAAAAAATAAGGAAAAAAA‑AGAAAGGGAAAAAAAGAAAAATCCAA‑AAAAAGTGGGTTAACTTAAAAATAAGGAGGGGGAAAAAAAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGgcagca < 2:119388/248‑1 (MQ=255) gtgtttctttttATGCACCCCGGCTTTTTAAAGAAGAAATTAAGAAAAAAAA‑TAACAGGG‑AAAAAGAAAAAATTCTA‑AATAAATGGGATAACTAAGAAATTAGGATTGCGGAAAATAACA‑CCCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGgcagca < 1:161164/242‑1 (MQ=255) ttGTTTTTATGCAGCCCGGTTTTTTTATAAAAAAATTATGAAAAAAAA‑TGAAAGGA‑AAAAAGGAAAAATTCTA‑AATAAAGGCGGTAATTTAGAGATTAGGATTGCGGAAAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAg < 1:655132/249‑1 (MQ=255) ttAGGCAGCCCGGTTTTTTTAAAAAAAAATTAGGGAAAAAAA‑GGAGAGGA‑AAAAAGGAAAAATTCTA‑AAAAAAGGCGATAATTTAGAGATTAGGTTTGGGGAAAAAAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCg < 1:302256/249‑1 (MQ=255) ttatgaacgcGGTTTTTTTAAAAAAAAAATATAGAAAAAAATTGAAAGGA‑AAAAAGGAAAAATTCCA‑AATAACGGGGGTATCTTAAATTTTGGGATTGCGGAAAAAACCC‑GCCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCg < 2:627763/240‑1 (MQ=255) cAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAAt > 1:126561/1‑249 (MQ=255) ggCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGt > 1:185416/1‑248 (MQ=255) tttttATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTcc > 2:145569/1‑250 (MQ=255) gaagaaATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAg > 1:439097/1‑249 (MQ=255) aaaTTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTaaaa > 2:377382/1‑250 (MQ=255) aataaggAAAAAAA‑AGAAAAGG‑AAAAAAGAAAAAATCCCAAAAAAAGGCGGTAATTAAGAGATTGGGATGGGGAAAAAAAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAAt < 1:65174/245‑1 (MQ=255) taagggAAAAAAA‑TGAAGAGA‑AAAAAGAAAAAATACTA‑AATAAGTGCTGTAATGTAGAAATAAGGAGGGGGAAAAAAAACA‑CCCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTa < 2:314391/246‑1 (MQ=255) agagaaaaaaa‑TGAGAGGA‑AAAAAGGAAAATTTCTA‑AAAAAATGCGGTAATTAAGAAATTAGGATTGGGGAAAAAAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTAc < 1:391933/243‑1 (MQ=255) gaAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAg > 1:390996/1‑250 (MQ=255) aaaaaa‑TGAAAAGA‑AAAAAGGAAAAATCCTA‑AATAAAGGAGGTAAATTAGAGATTAGGGTTGCGGAAAAAAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCAGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAg < 2:627813/249‑1 (MQ=255) atgaaagaaaaaaaGAAAAAATTCAA‑AAAAAAGGGTGTAAATTAGAGTTTAGGA‑GGGGGAAAAAAACACACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGAt < 2:234316/241‑1 (MQ=255) g‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATaa > 2:194345/1‑250 (MQ=255) aaaaGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATc > 2:265025/1‑250 (MQ=255) aaaGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCg > 2:179543/1‑250 (MQ=255) aaataaaTTATA‑AATAAGTGGGTTAACTAAGAAATTAGGTGGGAGGAAAAAAAAA‑CCCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTgg < 2:576044/246‑1 (MQ=255) | AATTTAAAGAGAGCGTGGAAGCGATTCTCGGTGAAACGTTGGATCTGCCAAAAGAGCTGGCAGAACGTGCTGATTTACCCTTGCTTTCACATAATCTG‑CCCGCCGATTTTGCTGCGTTGCGTAAATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAA‑TGACAGGG‑AAAAAGGAGAAATTCTC‑AATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACA‑ACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGG > NZ_CP009273/4875‑5361 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |