| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,612,067 | 0 | A | G | 38.7% | 92.3 / 25.2 | 62 | E161G (GAG→GGG) | yjjJ | type II toxin‑antitoxin system HipA family toxin YjjJ |
| Reads supporting (aligned to +/- strand): ref base A (6/32); new base G (24/0); total (30/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.12e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCTAATTG > NZ_CP009273/4611820‑4612315 | aTCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCggggagg < 2:33043/250‑1 (MQ=255) ggTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCgggggggggg > 1:745491/1‑248 (MQ=255) gtgCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTATGATGGTTTGCCCTGGCATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAAATGAATCTGCCTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTGGGGT‑GGGTGGGGAGCGGtattat > 2:347076/1‑250 (MQ=255) tgCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTTGGGGGGGGGGAGTAtt > 2:578283/1‑249 (MQ=255) cTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAg < 1:195860/250‑1 (MQ=255) gCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGa < 1:35210/250‑1 (MQ=255) ttGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGGT‑GGTCGGGGGGGGGGATTATTAGCGATGGGTTACTGca > 1:97864/1‑250 (MQ=255) gTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAacac < 1:744678/249‑1 (MQ=255) aCAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCt < 2:400070/249‑1 (MQ=255) cAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAAt < 2:459299/250‑1 (MQ=255) cAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGGGGGGGGGGGGGATTATTAGCGGTGGGTTACTGCACAACACCCCGccgcaaa > 2:629746/1‑244 (MQ=255) aGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAAtt < 2:569429/250‑1 (MQ=255) tGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATGTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACTTTGCGGAAATTCct < 1:710565/250‑1 (MQ=255) cgacgaACAGTGGTTTGATGGTTTGCCCTGGCATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGGTGGTT‑GGCGGGGGGGGGGGATATTCAATGGTGGATTACTGCAAAAAAGCCCGCGGaaagttgtctg > 1:708310/1‑242 (MQ=255) gacgaACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTgg < 1:297632/250‑1 (MQ=255) aGTGGTTTGATGGTTTGTCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTTGGGGCGGGGGGGGGGATTTCTAGGGGTGGTTTA‑TGCCCAACACCCCCGGGGAATTGCTCTGGGGCaaa > 2:533958/1‑249 (MQ=255) aGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTAGCGGGTGGGTT‑GGGGGGGGGGGGGGTTTTTC‑GCGGTGGGTTACTGTAAAACAACCTGCGGAAATTTCCCTggcttaca > 2:761426/1‑243 (MQ=255) tttGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCa < 1:690464/250‑1 (MQ=255) aTGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCa < 1:132760/250‑1 (MQ=255) gTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGGCGGGGGGGGGGATTATTAAGGGTGGATTTCTGCACAAAACCCCGCGGGAAATCCCCTGGGTCAAAAAACCACCCCtt > 1:303970/1‑249 (MQ=255) tGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGGGGGGGAATATCAGCGATGGGTTACTGCACAACAACCTGCGGGAAATCCTCTGGGTCAAAAACTCACCCATTACg > 1:251691/1‑249 (MQ=255) ccTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACa < 1:195071/250‑1 (MQ=255) tGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGGT‑TGGGGGGGGGGGGGATTATCAGCGGTGGAATAATGCACAAAAACCCGCGGAAAATTCCCTGGATCAAAAAACTACACATTACGAACAGc > 1:545691/1‑250 (MQ=255) gTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTg < 1:94950/250‑1 (MQ=255) tttGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGc < 1:286282/249‑1 (MQ=255) tttGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGc < 2:86072/249‑1 (MQ=255) tttGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGc < 1:108540/249‑1 (MQ=255) gACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAg < 2:349907/249‑1 (MQ=255) cGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGGT‑GGGCGGGGGGGGGGATTATCAGCGGTGGATTACTGCACCACACCCTGCGGAACTTCCTCTCGGTCAAAAAATCCCCCATTACGAACAACTGGCaacggat > 2:654436/1‑245 (MQ=255) gATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGCTGGGT‑GGTCGGGGAGGGGGATTATTAACGATTGGTTTATTCACAAAACCCCGCGGGAAATCCTCTGGTGCAAAAACTCACCCATTAAGAAAAGCTGGCAAAGG‑ATg > 1:409560/1‑250 (MQ=255) aTCTCCGACCGCAGGGCTTTTTAGGGAGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGATGGGT‑GGTTGGGGGGGGGAATTATCAGCGGTGGAGTATTTCACAAAGCCCTGCGGAAAATCCCCTCGATTAAAAAATCAACCATTACGAACAACAGGCAACTC‑ATGc > 2:787787/1‑250 (MQ=255) aCCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCa < 1:57559/250‑1 (MQ=255) cTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGGT‑GGTGGGGGGGGGGGATTATATGTGATGGATTACTGGCAACCACCCCGCGGGAATTTCCCTGGGTCAAAAACTCAACCCATATGAAACGATCGCAAAGG‑ATGCGcaggcagggtgaaac > 2:210430/1‑243 (MQ=255) tAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGGGGGGGGGGGGGATTATTAGCGATGGATTTCTGCACCACACCCTGCGGGAATTCCTCTGGGTCAAAAACACACCCCATACCAACAACCCGCAAACG‑ATGCACCAGCAGGAGGAAATGCggg > 2:385360/1‑250 (MQ=255) gTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGGT‑GGGCGGGGGGGGGGAATATTAGCGGTGGGTTAATGCACAAAACCCTGCGGGAAATTCTCTGGATCAAAAAATCACCCCTTAAGAAAAACTGGCAAGGG‑ATGCACCTGCAGGGGGAAATGTggggtttttttcg > 1:308958/1‑240 (MQ=255) gAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGGT‑GGTCGGGGGGGGGAATTATTAGCGATGGGTTTCTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGGTTTTTTGCGGgcggcggg > 1:724227/1‑248 (MQ=255) gCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGGCGGGGGGGGGGATTATTAGCGATGGATTATTGCACAAAAACCCGCGGGAAATTCTCTTGGTCAAAAAATAACCCACTACGAACAACCTGCAAGGGAATGAACTGCAGGGGGAAATTGTGGTTGTTTCTggggggggggggcgcca > 2:637724/1‑240 (MQ=255) cAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTa < 1:208098/250‑1 (MQ=255) tgactgaTGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGGCGGGGGGGGGGATTATCAGCGATGGATTACTGCACCACACCCCGCGGGAATTCCTCTTGGTCAAAAACTCACCCCTTACGAACAGCCGGCAAGGG‑ATGCACAGGCAGGGGAAAATGTGGGTTCTTCTGCGGGGGGGGGGCGGCCAAAATTTAACTACTCTGc > 2:239301/1‑250 (MQ=255) actgaTGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGcac < 2:107658/250‑1 (MQ=255) ctgaTGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGGACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGcaca < 2:649766/250‑1 (MQ=255) atgatATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGGGGGGGATTATCAGCGATGGGTTACTGCACAACACCCTGCGGAAAATTCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTTGCAGGGGAAATTGTGGGGTCTTCTTCGGGGGGGGGGCAGCCCAAAATTTTCTACTCTGCACaaa > 1:750400/1‑249 (MQ=255) atgatATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAAc < 2:762001/250‑1 (MQ=255) ataCGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑TGTCGGGGGGGGGGATTTTTAGCGATGGATTACTTCCCAACACCCTCCGGAAATTTCTCTGGATCAAAAAATCACCCCTTACGAACAACTGGCAAGGG‑ATGCACCTGCAGGAGGAATTTTGGGGTTTTTTGCGGGGGGGGGGGCACCAAAAATTAACTACTATTCACcaaaccccc > 2:782565/1‑244 (MQ=255) taCGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTc < 2:433710/250‑1 (MQ=255) gCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATaaa < 2:335784/250‑1 (MQ=255) gCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATaaa < 1:288186/250‑1 (MQ=255) cAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGGTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATaaa > 1:197662/1‑249 (MQ=255) aagaTGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGtt < 1:540749/250‑1 (MQ=255) tgtgCTCTACGCCCTGATCGTATTTAACTGTGAATATACTGTC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTg < 1:166804/250‑1 (MQ=255) tgCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGGGGGGGATTTTTCGCGGTTGATTACTGCACAAAAACCCTCGGGAAATCCTCTTGGTCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACCGGCAGGAGGAAATTTGGGGTCTTCTTCGGGGGGCGGGGCGCCAAAATTTTACCAATATGGCCAAACGCCCTTACGGACATAAA‑AT‑GTGTTGGTGa > 2:4906/1‑249 (MQ=255) ctctACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGGGGGGGATTATTAGCGATGGATTACTGCACAACACCCTGCGGGAATTTCTCTGGGTCAAAAACTCACCCCTTACGAACAGCTGGCAAGTG‑ATGCACTTGCAGGGGGAATTGTGGGGTCTTTTGCGGGGGGCGGGGAGCCAAAAATTTCCTACTATGCACAAAAGCCGGCA‑GGCAATAAACAT‑GTGGTGGGGaaaa > 1:353231/1‑249 (MQ=255) tctACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTTGTT‑GGGCGGGGGGGGGGATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTTGATCAAAAACACACCCACTACGAACAACTGGCAAGTG‑ATGCACTGGCAGGAGGAAATGTGGGGTCTTCTGCGGGGGGCGGGGCGACAAAATATATCTACTATGCCCCAAAGCCGCCG‑GGCAAAAAAAAT‑GTGTTTGTGGAAtt > 2:304071/1‑250 (MQ=255) ctACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTTGTT‑GGTCGGGGGGGGGGATTTTCAGCGATGGATTTCTTCACAACACCCTGCGGGAATTCCTCTGGGTCAAAAAATCACCCCTTACGAACAACTGGCAAGTG‑ATGCACTGGCAGGGGGAAATTTGGGGTCTTTTTCGGGGGGCGGGGCGCCCAAAATTACCTACTATGCCAAAAACCCGGCA‑GGCAAAAAAAATGGGGTTGGGGAAAt > 2:412861/1‑249 (MQ=255) gCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCg < 1:538534/250‑1 (MQ=255) cccTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGt < 1:214007/250‑1 (MQ=255) tGAATATACTGGC‑GGTTGGTT‑GGTCGGGGGGGGGGATTATCAGCGATGGATTACTGCACAACACCCCGCGGGAATTTCTCTGGGTCAAAAAATCACCCATTACGAAAAGCCGGCAAGTG‑ATGCACTGGCAGGGGGAAATGTGGGGTTTTCTTCGGGCGGCGGGGCGCCAAAATTTTCCTTCTATGCACCAAAGCCGGCA‑GGCCATAAACAA‑GTGTTGGGGGAAATCACCGTACCCCACCCAACCGCCGTc > 2:749239/1‑250 (MQ=255) cTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAAc < 2:97864/249‑1 (MQ=255) c‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTgg < 1:653302/250‑1 (MQ=255) gttggtt‑gGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTgggg < 1:331632/250‑1 (MQ=255) gttggtt‑gGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTgggg > 1:533816/1‑250 (MQ=255) tggtt‑ggtCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGt > 1:324685/1‑249 (MQ=255) tt‑ggtCGGGGAGAGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGAcc < 2:670346/250‑1 (MQ=255) gtCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGTACCACAGCAGACCGCGGTCAGCCAACGTTGGGGTGACCTGc > 1:412147/1‑250 (MQ=255) ggggaggggaATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCTa < 2:82637/249‑1 (MQ=255) gaggggaATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCTAATTg < 1:174074/250‑1 (MQ=255) | ATCCGGTTGTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGC‑GGTTGGTT‑GGTCGGGGAGGGGAATTATCAGCGATGGATTACTGCACAACACCCTGCGGAAATTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTG‑ATGCACTGGCAGGAGAAATTGTGGGTTCTTCTGCGGGCGGCGAGCAGCCAAAATTTACCTACTATGCACAAACGCCGTCA‑GGCAATAAACAT‑GTGTTGGTGAAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCTAATTG > NZ_CP009273/4611820‑4612315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |