Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 4,036,353 | 0 | C | T | 50.0% | 25.7 / 26.7 | 56 | F193F (TTC→TTT) | srkA | stress response kinase SrkA |
Reads supporting (aligned to +/- strand): ref base C (17/10); new base T (27/0); total (46/10) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.05e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GCCAGTTCGAAGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTAT > NZ_CP009273/4036109‑4036602 | gCCAGTTCGAAGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGt > 1:286485/1‑250 (MQ=255) gTTCGAAGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTg < 2:385080/250‑1 (MQ=255) gTTCGAAGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGAATTTACCGTTCTg > 2:865342/1‑250 (MQ=255) tCGAAGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCg > 1:865589/1‑250 (MQ=255) gATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAGATTTTAACGTTTTGCGGcctcatt > 1:781036/1‑244 (MQ=255) aTCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGGTTTGACCGGTCTGCGGGCACATTGAGACTGACa > 1:466032/1‑250 (MQ=255) aTCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCGACATGGAGAATGCCa > 2:695969/1‑250 (MQ=255) ggAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCggg > 1:593696/1‑250 (MQ=255) aaGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGAATTGCCCGGTCTGCGGCTACATGGACACCGCCCCGCCgggg > 2:400154/1‑248 (MQ=255) aaGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGCGTGATTTTTTCGTTTTGCGGGTCCATTGGGTCTTGCCCGCCggggg > 2:791003/1‑248 (MQ=255) cGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAGGTTTTACCGTTTTGCGGCTACATGGGGAATGCCCCGCCGGGAatat > 1:616751/1‑250 (MQ=255) ttGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGTGAGATTTCGTCCTTCTGCGTCGACATCGAGACCACCGCGCCGCGGATATtct > 2:46959/1‑250 (MQ=255) gCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTCTCTgg > 1:103404/1‑250 (MQ=255) cAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATTGGGACTGCCACGCCGGGAATATTCTCTTGCGCGGT‑GGTCCAATGTttgttg > 1:597306/1‑250 (MQ=255) gACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGGTACATGGAGAATGCCACGCCGGGGATATTTTCTTGCGCGGT‑GGGTCAATGTttgttgtt > 2:162405/1‑248 (MQ=255) aCGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCCACATGGAGACTGCCCCGCCGCGGAGATTTTCTGGCGCGCT‑GGTCCCAtgtttgtttttc > 2:699873/1‑246 (MQ=255) gcAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATAtt < 1:106947/212‑1 (MQ=255) aGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCCGGGATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACg > 1:96277/1‑250 (MQ=255) ttttATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCCTTCTGGGGCTACATGGAGAATGCCCCGCCCGGGGTATTCTCTGGCGCGCT‑GGTGCAATGTTTGTTGTTCTGGATGATGCACGTAAt > 2:292005/1‑250 (MQ=255) tCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAGATTTTACCGTTCTGCGGCTACATGGGAACTGGCCCGCCGGGGATATTCTCTGGCGCGGT‑GGGCCAATTTTTTTTGGTCTGGGTGGTGCCCGGAATGGTc > 2:463850/1‑249 (MQ=255) tCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCCCGCCGGGGATATTCTCTGGCGCGAT‑GGGCCAATGTTTTTTTATCTTGATGATGCACGTAATGGTc > 1:336272/1‑249 (MQ=255) ccATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTTTCTGGCGCGGT‑GGTCCAATGTTTTTTGGTCTTGATGATGCACGTAATGGTc > 1:37727/1‑248 (MQ=255) cATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGAATTCACCCTTCTGCGGCCACAAGGAGACTGCCACGCCGGGGATATTCTCTTGCGCGGT‑GGGCCAATGTTGTTTGTTCTTGAAGGTGCACGTAATGGTTCAg > 2:431827/1‑250 (MQ=255) tCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGcc > 1:25350/1‑250 (MQ=255) gCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCCACATGGAGACTGGCCCGCCCGGGATATTCTCTGGCGCGGT‑TGTCCAATGTTTGTTTGTCTTGGTGATGGACGTAATgggtccgccgg > 2:459095/1‑241 (MQ=255) ccGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGCTc < 1:61222/250‑1 (MQ=255) gACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGGTTTGCGGCTACATGGAGACTGCCACCCCGGGGATATTCTCTGGCGCGGT‑GGGCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGGTCAg > 1:873538/1‑250 (MQ=255) ccATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGGTCTTCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGGTGATGCACGTAATGGGCCAGCCGTTCCGGa > 1:355413/1‑250 (MQ=255) ggTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGCT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTtgt > 1:340526/1‑250 (MQ=255) aaCGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCAc > 1:631876/1‑162 (MQ=255) aCGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACg < 2:631876/162‑1 (MQ=255) tatCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTTGCGCGGT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGGAATGGTCCAGCCGTTCAGGATTTGTGGGTGTTGCTc > 1:190104/1‑249 (MQ=255) cATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGCT‑GGTCCAATGTTTTTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGGTGTTGTTCAATggg > 1:454559/1‑249 (MQ=255) ccACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAAATTTTACCGTTCTGCGGCCACATGGGGACTGCCCCCCCGGGGATATTTTCTTGCGCGGT‑GGTTCCATGTTTGTTTGTTTGGGTGATGGACGTAATGGTTCAGCCGTTCCGGGTTTTTGGGGGGTGGTCAATTGGGGTaaa > 2:300165/1‑249 (MQ=255) cTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTCCCGTTCTGCGGGTCCATGGAGACTGCCACGCCCGGGATATTTTCTTGCGCGGT‑GGGCCAATGTTTGTTGATCTGGGTGATGCACGTAAAGGTTCAGCCGGTCTGGGTTTGTGGTTGTTGCGTAATGGCGATAAAAGCGagcaac > 2:915491/1‑248 (MQ=255) tttGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCCTTCTGCGGCCACACGGGGACTGCCCCCCCGGGGATATTCTCTGGCGCGGT‑TGTCCAATGGTTTTTGGTCTGGATGATGCACGTAATGGTCCACCCGTTCCGGGTTTTTGGATGGTGCTCCATGGCGGTAAAGCCCAGGCGCggg > 2:254162/1‑249 (MQ=255) tttGAGGACGCTACACTGATACCTCCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCgg < 2:394042/249‑1 (MQ=255) cttcccGGGTGGAAAGCGGCATTCCTGAAGGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTg < 2:933732/246‑1 (MQ=255) cTTCCGGGTTGAAAGTGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTTTCTTGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGGTTTGTGGGTGTTTCTCAATTGCGATAAAACCGAGCAGAGGATGCAACTGGGAACTatttttt > 1:222851/1‑248 (MQ=255) ccGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGGT‑GGTCCCAATTTTTTTGATCTGGGGGATGCACGTAATGGTCCAGCCGTTCAGGGTTTGTGGGTGTTTCTCCATGGCGATGAAAGCGGGACGAGGGTGGGACTGGGAAATATTTTTGaaac > 2:136211/1‑248 (MQ=255) ccGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTTTCTGGCGCGAT‑GGTCCCATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGGTCAGGATTTGTGGGTGGTGCTCAATGGCGATAAAACCGAGCAGCGGGTGCAACTGGGAACTATTATTGAAGc > 1:552530/1‑250 (MQ=255) gTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCGACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGAT‑GGTCCAATGTTTTTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCCGGATTTTTGGAGGTTGCTCAATGGCGGTAAAAACGAGCAGCGGGTGCAACTGGAAAATATTATTTAAACTTAt > 2:412158/1‑250 (MQ=255) ttGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAGAATTTACCGTTCTGCGGGCACATGGAGACTGCCACGCCGGGGATATTTTTTGGGGCGGTGGGTCCAA‑GTTTGTTTATCTGGGTGGTGCACGGAAAGGGCCAGCCGGTCCGGGTTTGTGGGTGTTGGTCAATGGCGGTAAAACCGGGGAGCGGGAGGCACTGGAAAATTTTTTTTAAGCTTTTg > 2:443951/1‑250 (MQ=255) gAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATga < 2:167912/249‑1 (MQ=255) aTTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGc < 1:909349/250‑1 (MQ=255) ttCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTTTCTGGCGCGGT‑GGTCCAATGTTTGTTGATCTGGGTGATGCACGTAATGGTCCAGCCGGTCAGGATTTTTGGATGTTGCTCAATGGCGGTAAAACCGAGCAGCGGGTGCAACTTGAAAATATTATTTAAGCTTATGAAGAATTTAGCg > 1:231858/1‑250 (MQ=255) gCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAGATTTTACCGTTCTGCTGCTACAAGGTGACCGCCACCACCGGGATATTCTTTTGCGCCAT‑GGTCCCATGTTTTTTGAACTGGGTTATTCACGTAAAGGTGCAGCCGTTTAGGGTTTGTGGATGTTGATCAATGGCGGTAAAGCCGAGCAGCCGGTGGAAATGGGAAAGATTATTGGAGGCTATGAAGAAGTTAGAGGGTTCggc > 2:390948/1‑247 (MQ=255) gACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGAATTTACCGTTCTGCGGCTCCATGGAGACTGCCCCGGCGGGGATATTTTCTGGCGCGGT‑GGTCCCATGTTTTTTTATCTGGGTGATGCACGTAATGGGCCAGCCGGTCCGGGTTTTTGGGTGTTGGTCCATGGCGATAAAGCCCGGCAGCGGGTGCAAATGGAAACTATTATTTAAGCTTATGAAAAATTTATAGGGTTCGaccac > 2:892750/1‑247 (MQ=255) cAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGGTGATGCACGTAATGGTCCAGCCGTTCAGGGTTTGTGGGTGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGc > 1:476103/1‑250 (MQ=255) aTGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTTCGGCCACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGGT‑GGGCCCATGTTTTTTGATCTGGATGATGCACGGAATGGGCCAGCCGTTCCGGGTTTGTGGGTGTTGCTCCATGGCGATAAAACCGAGCAGCGGGGGGAACTGGGAAATATTATTTAAGCTTTTGAAGAAATTAGCGGGTTCGACACCGccg > 2:528790/1‑247 (MQ=255) gccgccGTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCCACATGGGGAATGCCCCGCCGGGGATATTTTCTGGCGCGAT‑GGGTCCATGTTTGTTGATCTGGATGATGCACGCAATGGGCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGGGATAAAGCCGAGCAGCGGAGGGCACTGGGAACTATTTTTGAAGCTTTTGAAGAAATTTGCGGGTTCGACACCGCGGGAAACGGGCTgg > 2:661553/1‑249 (MQ=255) cgTTACAGCACACTGGCGGGAAGATTTTACCGTTCTGCGGCGACATGGAGACTGCCCCGCCGGGGATATTCTCTGGCGCGGT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGGTTTGTGGATGTTGTTCAATGGCGATAAAGCCGCGCAGCGGATGGAACTGGGAACTATTATTTAAGCTTATTAAGAATTTAGCGAGTTCGACAACCCTGAAATCGGACTGATTGaa > 2:360949/1‑250 (MQ=255) aGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTa < 1:214751/250‑1 (MQ=255) gATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTgg > 1:89167/1‑250 (MQ=255) ttCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGtt > 1:857183/1‑249 (MQ=255) tCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGttt < 1:76511/249‑1 (MQ=255) cACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTttat > 2:18911/1‑250 (MQ=255) | GCCAGTTCGAAGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGAT‑GGTCCAATGTTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTTCAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAGAATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTTAT > NZ_CP009273/4036109‑4036602 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |