| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,354,816 | 0 | A | C | 47.3% | 89.4 / 14.2 | 74 | G26G (GGT→GGG) | rhmD | L‑rhamnonate dehydratase |
| Reads supporting (aligned to +/- strand): ref base A (14/25); new base C (0/35); total (14/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.82e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGATATCACTGACACATTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCGAGATCGCAGCGGTAAGCTCGT > NZ_CP009273/2354569‑2355059 | tGATATCACTGACACATTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGCC‑TGGCATGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGGGATAATCAcc > 2:763188/1‑250 (MQ=255) gATATCACTGACACATTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCAcc < 1:948988/249‑1 (MQ=255) gATATCACTGACACATTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCAcc < 2:121922/249‑1 (MQ=255) tatCACTGACACATTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCAccgcc < 2:53115/250‑1 (MQ=255) tCACTGACACATTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCAccgccg < 1:120683/249‑1 (MQ=255) aCTGACACATTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCgccgcc < 1:553543/249‑1 (MQ=255) acacATTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAgcg < 1:559996/249‑1 (MQ=255) aTTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCttt > 2:26797/1‑250 (MQ=255) tACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCttttt < 2:7519/249‑1 (MQ=255) ccTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTctgc < 1:572379/250‑1 (MQ=255) aaaCGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCa < 1:770623/249‑1 (MQ=255) aaaCGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCAc < 2:894178/250‑1 (MQ=255) aCGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCg < 2:422718/250‑1 (MQ=255) ggTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGGGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGc > 2:584179/1‑249 (MQ=255) ttAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAg > 1:514288/1‑250 (MQ=255) tAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAg > 1:594158/1‑249 (MQ=255) ttCAACAAAAAACCCGCCCATTCCCCCGGC‑GTTGAAACCGGGGAACCCGTTCGGGCCGTTTCCTCCTCCGACTCCACCAACAAACGTGCCAAGACCGTTAATGCC‑AAAGGCC‑TGGCGGGCCTGCTCGTAACCGCGGTTTTTCCTCATC‑GGGGGGGCAATATGATCCTCTATCCGGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGgc < 2:186794/249‑1 (MQ=255) cacaaaTAAAACGCCCCATTCCCCCGGCTGCCGAAC‑CGGCAATTCCGTTCGGGCGTTTTTCTGTTCCGACTTCAACACCCAACGTGCCAAGAACTTTAACCCC‑AAATGAC‑TGGCGTGACTGCTGGAAACCGCGGTTTTTACTCTCC‑GGGGGGGCAAGATGATCGTCTATCCGGTGTTTCGCCCCCT‑GGTCGTGAAAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGcgcg < 2:646182/246‑1 (MQ=255) tAAACCGGCCCATTCCCCCGGCTGTCAAAC‑GGGCGACCCCGGTCTGTCCTTTTTCTGTTGCGACTTCAACACCCACCGTGCCAAGAACGTTAAGGCC‑AAATGAC‑GGGCGTGCCTGCTCGTAATCGCGGTTTTTCCTCATC‑GGGGTGGCAATATGATCTTCTCTCCAGTTATTCCCCCCCT‑GGTCGTGATAACCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTg < 2:136007/250‑1 (MQ=255) aaaaCAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGt > 1:47734/1‑250 (MQ=255) gCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCACCGTGCCAAGAACGTTAATGCC‑AAATGAC‑GGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAAtt < 1:84076/250‑1 (MQ=255) tttCACCGGCTTTCGAAA‑CGGCGATTCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACACCCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTgg < 1:779059/250‑1 (MQ=255) cACGGGCTGTCGAAA‑CGGCGAATCCGGTCGGGCCGTTTTCTGCTTCGACTTAAACAACCAACGTGCCAAGAACGTTAAGGCA‑AAATGAC‑GGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGAAATATGATCGTCTACCCAGTGATTCGCCCCCT‑GGTCGGGATAATCACCGCCGCCAGCGTCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTa < 1:612662/249‑1 (MQ=255) cACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAg > 1:687068/1‑250 (MQ=255) ccGGCTGTCGAAA‑CGGCGAACCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAggg < 1:296230/250‑1 (MQ=255) gAAA‑CGGCGAACCCGGTCTGGCCTTTTTCTGCTTCGACTTCAACAACCACCGGCCCAAGACCGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCatgatg < 1:799481/249‑1 (MQ=255) cgccGATTCCGGTCTGGCCGTTTTCTGCTTCGACTACAACAACCAACGTGCAAAGAACGTAAATGCA‑AAATGAC‑GGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGAAATATGACCGTCTACCCAGTGTTCCCCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTtctc < 2:818931/247‑1 (MQ=255) cGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCACCGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTtctc < 1:835828/250‑1 (MQ=255) caattCCGGTCGGCCCTTTTACTGTTTCAACTCCAACACCCAACGTGCCAAGATCGTTAACGCC‑AAATGCC‑GGGCGTGCCTCCCCGAAATCGGTTTATTCACTCATC‑GGGGTGACAATATGTTCGTCTATCCATTTATTCGCCCCCT‑GTTCGTGATAATCCCCGCCGCCACCCCCTTTTTCTGCTGTCGCCCCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCAt < 2:273904/246‑1 (MQ=255) gAATCCGGTCTGGCCTTTTTCTGCTTCGACTCCAACACCCAACGTGCAAAGAACGTTAATGCA‑AAATGCC‑GGGCGTGACTGTTCGTAAGCGCGGTATTTACTCAGG‑GGGGTGACAATATGATCTTCTATCCAGGTATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTTTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCAtt < 2:958237/250‑1 (MQ=255) aaTCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACAAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGGGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTg < 1:205106/250‑1 (MQ=255) cGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTAt > 1:312497/1‑250 (MQ=255) tcgggCCGTTTTCTTCTTGAACTTCAACACCAACCGTACAAAGAAC‑TTAATGCCAAAAGGCC‑TGGCGTGCTTGCCCGTAACCGGGGTATTTACTCATC‑GGGGGGAAAATATGATCGTCTACCCAGTGTTCCGCCCCCG‑GGTGGTGATAACCACCGCCGCCAGCGCTTTTTTTTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAg < 2:742378/247‑1 (MQ=255) gCCGTTTTCTGCTTCGACTTCAACAACCAACGTCCCAAGAACGTTAATGCC‑AAAGGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTCCTCATC‑GGGGTGGCAATATGATCGTCTACCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCt < 1:728927/249‑1 (MQ=255) cGTTTTCTGCTTCGACTTCAACAACCAACGTGCAAAGAACTTTAATGCC‑AAATGAC‑TGGCGTGCCTGCTCGTAATCGCGGTATTTCCTCATC‑GGGGTGGCAATATGACCGTCTATCCAGTGATTCGCCCCCG‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGt < 1:648194/250‑1 (MQ=255) gTTTTCTGCTTCGACTTCAACACCCAACGTGCAAAGACCGTTAATGCC‑AAATGCC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGAAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGAAAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTa < 1:793636/250‑1 (MQ=255) ttCTGTTTCGACTTCAACAACCACCGGGCCAAGACCTTTAATGCC‑AAAGGCT‑GGGCGTGCCTGCTCTTAATCGCGTTTTTTCCTCATG‑GGGGTGGCAATATGCTCGTCTATCCGGTGTTTCCCCCCCG‑GTTCGTGATAATCCCCGCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAg < 2:411515/249‑1 (MQ=255) tCTGCTTCGACTTCAACAACCACCGGGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGt < 1:137929/249‑1 (MQ=255) ggttccgcttccaacaaCCACCTGGCAAAAACCGTTAATCCC‑AAA‑GACGTGGCGTGACTGCTCGTAATCGCGTTATTCCCCCGTG‑GGGGTGGAAATATAGTCGTCTACCAAGTGATCCCCCCCCG‑GGTCGTGATAATCCCCCCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCa < 2:466901/238‑1 (MQ=255) ctccaccaaccaacGTCCCAAGAACTTTAATCCC‑AAATGCC‑TGGCGTGACTCCTCGTAATCGCGGTTTTTACTCATG‑GGGGGGGCAATATGTTCGTCTATCCAGTTTTCCGCCCCCT‑GGTCGTAATAATCCCCGCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACtt < 2:64731/244‑1 (MQ=255) tCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACtttt > 1:582505/1‑250 (MQ=255) acaacacCCAACGTGCAAAGAAGTTTAATGCA‑AAAGGAC‑GGGGGGGACTGCTCGTAATCGCGGTATTTCCCCATG‑GGGGTGGAAATATAACCGTTTATCCATTGTTTCCCCCCCT‑GGTCGTGATAACCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACttt < 2:709399/248‑1 (MQ=255) caacacCCAACGTGCAAAAAACTTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACtttt < 1:859166/249‑1 (MQ=255) aGAACGTTAATGCC‑AAATGCC‑GGGCGTTACTCCTCGTATTCGCGTTATTTACTCATG‑GGGGTGGAAATATGTTGTTCTATCCGGTGTTTCCCCCCCG‑GGTGTTGAAAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGa < 2:789463/250‑1 (MQ=255) aaCGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGAAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGaaa < 1:481365/250‑1 (MQ=255) cGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAata > 1:32884/1‑250 (MQ=255) tGCC‑AAATGAC‑TGGCGTGACTGCGCGTAATCGGGGTATTTACTCACG‑GGGGTGACAATATAATCGTCTACCCAGTTATTCCCCCCCG‑GGCCGTAATAATCCCCCCCGCCAGCCCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTg < 2:182688/250‑1 (MQ=255) aggccgggggggACTGCTCGAAACCGCGTTATTTACCCAGG‑GGGGTGGAAATATGATCGTCTATCCAGTTTTTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAg < 2:898381/239‑1 (MQ=255) cc‑TGGCGTGACTGCTCTTAACCGCGGTATTTCCTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GTTCGTGATAATCACCGCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCa < 1:356237/249‑1 (MQ=255) ggCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATg > 2:320926/1‑250 (MQ=255) gCGTGACTGCTCGTAATCGGGTTATTTCCTCATC‑GGGGGGGAAATATGACCGTCTACCCAGTG‑TTCCCCCCCTGGGCCGATATAACCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATgg < 2:92580/250‑1 (MQ=255) ggTGCCTCCTCGAAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTACCCAGTGATTCGCCCCCT‑GGTCGTAATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGc < 1:784634/249‑1 (MQ=255) tGACTGCTCTTAATCGCGGTATTTCCTCATC‑GGGGTGGCAATATGTTCGTCTATCCAGTGATTCGCCCCCG‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCt < 1:45471/250‑1 (MQ=255) cTCGTAAGCGCGGTATTTCCTCATC‑GGGGTGGCAATATGATCGTCTACCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGccc < 1:120379/249‑1 (MQ=255) ctctaaaccgggTTTTTTCTCATGGGGGGTGGAAATATGTCCGTCTACCCGTTGATCCCCCCCCT‑GGTCGTGATAACCCCCGCCGCCAGCGCTTTTTTCTGCTTTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGcc < 2:190787/238‑1 (MQ=255) gTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCGGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGcc < 1:834058/249‑1 (MQ=255) aTCGCGGTATTTCCTCATG‑GGGGTGGAAATATGCTCGTCTACCCAGTGATCCCCCCCCT‑GGTGGTAATAATCCCCGCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGAt < 2:47734/250‑1 (MQ=255) tCGCGTTATTTACTCATC‑GGGGTGGCAATATGATCGTCTACCCATTGATCCCCCCCCT‑GGTCGTGATAACCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATa < 1:107507/250‑1 (MQ=255) cgGTATTTACTCATC‑GGGGTGGCAATATGATCGTTTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATc < 1:153313/250‑1 (MQ=255) tttACTCATC‑GGGTGGGCAATATGATCTTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACgg < 1:679652/249‑1 (MQ=255) caccctcgggggTGCAAATTTAACCGTTTACCCAGTAATCCCCCCCGG‑GGTCGTGAAAACCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTa < 2:230019/241‑1 (MQ=255) cATG‑GGGTTGGAAATATGACCGTCTACCCAGTGATCCGCCCCCT‑GGTCGTAATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTAttctt < 1:16491/250‑1 (MQ=255) aTC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTAttcttc < 1:57616/250‑1 (MQ=255) aTC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTAttctt > 1:787159/1‑249 (MQ=255) gggggTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCTTTTTTCTGCTGCCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCAt < 1:82174/249‑1 (MQ=255) ggggggGCAATATAATCGTCAACCCGGGGATCCCCCCCTG‑GGTGGGGAAAACCACCGCCGCCGGCGCTTTTTTCTGCTGTCGAACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTGTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCAtt < 1:57830/250‑1 (MQ=255) ggTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGa > 2:605310/1‑250 (MQ=255) aaaTATAATTGTCTACCCATTCATTCCCCCCCG‑GTTCGTAATAATCCCCGCCGCCAGCGCTTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGt < 2:629618/249‑1 (MQ=255) tattaccttCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAg < 1:266173/242‑1 (MQ=255) tGATCGTCTACCCAGTGTTTCGCCCCCT‑GGTCGTAATAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGc < 1:979977/249‑1 (MQ=255) gTCTACCCTGTATTTCGCCCCCT‑GGTCGTAATAACCCCCGCCGCCCGCGCTTTTTTCTGCGGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTAc < 2:881857/250‑1 (MQ=255) gCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCGAGATCg > 1:249086/1‑249 (MQ=255) ccccT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCGAGATCGCAg < 1:78498/250‑1 (MQ=255) aTAATCCCCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCGAGATCGCAGCGGTAAGCTCGt < 1:757987/250‑1 (MQ=255) | TGATATCACTGACACATTTACCCTCAATGAAACGGTTAAGATGTTTTTCGACAATAAAACAGCCCATTTCACCGGCTGTCGAAA‑CGGCGAATCCGGTCTGGCCGTTTTCTGCTTCGACTTCAACAACCAACGTGCCAAGAACGTTAATGCC‑AAATGAC‑TGGCGTGACTGCTCGTAATCGCGGTATTTACTCATC‑GGGGTGGCAATATGATCGTCTATCCAGTGATTCGCCCCCT‑GGTCGTGATAATCACCGCCGCCAGCGCCTTTTTCTGCTGTCGCACCGCCAGTAAACCAGGCGCGAACCTGTTTAATTTTTGGTAGGGTCATGATGTTCTCCATTGTTATGAGGCTTGTAAGTCAAAGGGACTTTTCCATCCCAACAGACGTGAAATATCCCTGGCGCAGGCAATGGCCTTGCCCGCCAGATAATCACGGTATTCTTCATTGATTTGTAAGCGGGTACCGACCACCGAGATCGCAGCGGTAAGCTCGT > NZ_CP009273/2354569‑2355059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |