Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092733,856,0280AG41.8% 66.5 / 21.9 67pseudogene (936/1617 nt)BW25113_RS19145PTS sugar transporter subunit IIB
Reads supporting (aligned to +/- strand):  ref base A (8/31);  new base G (28/0);  total (36/31)
Fisher's exact test for biased strand distribution p-value = 5.35e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTGTAA  >  NZ_CP009273/3855780‑3856273
                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                
cacaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGaa                                                                                                                                                                                                                                                                 <  1:472686/250‑1 (MQ=255)
  caACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGAATc                                                                                                                                                                                                                                                               <  2:784027/250‑1 (MQ=255)
       cAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGAATCAGCaa                                                                                                                                                                                                                                                       <  2:148634/250‑1 (MQ=255)
         aTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGTCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGAATCAGCAAGc                                                                                                                                                                                                                                                     <  2:775338/250‑1 (MQ=255)
          tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGAATCAGCAAGcc                                                                                                                                                                                                                                                    <  1:150474/250‑1 (MQ=255)
                                atCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAAGTTGGGGGGATAAGCGAACCCCCCCCCTTTTCCCCCTttttt                                                                                                                                                                                                                             >  2:479552/1‑249 (MQ=255)
                                   cgcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGGTGCGGGGATCAGCCAGCCCCCCCCCTTTTCCCGAtttttccgt                                                                                                                                                                                                                         >  1:661891/1‑245 (MQ=255)
                                    gggTGGTTGCGGACCACCGGGATCCAGTTGTGCGGTAAAACCTAGTCAACCAGCCCCCCCCCCTTGTTGCCCCCCACACAAAAGAGATACATTACGGCCGACATGGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTAAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATCCCCCCCAGCATGGCGGTTAGGGTGGCGGGAACCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTg                                                                                                                                                                                                                        <  2:239598/248‑1 (MQ=255)
                                       tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTTAGGGTGGGGGAATCAACCAAGCCCCCACTTTTACCCGCATTTTCGGGGCgg                                                                                                                                                                                                                     >  2:808130/1‑250 (MQ=255)
                                        ggTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTTAAGGTGCGGGGAACAACAAAACCCCCACTTTTTCACCAATTTTCGGGGCgg                                                                                                                                                                                                                     >  1:404078/1‑249 (MQ=255)
                                        ggTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGGTGCGGGGATCAGCAAGCCCGCCACCTTTACCCGATTTTCCGGGGCgg                                                                                                                                                                                                                     >  1:619209/1‑249 (MQ=255)
                                        ggTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAAGTTGCGGGGATCAGCAAACCCGCCACTTTTACCCCATTTTTCGGggcggc                                                                                                                                                                                                                   >  1:586568/1‑250 (MQ=255)
                                              tGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAAGGTGCGGGAATCAGGAAACCCGCCACTTTTACCCGATTTTCCGGTGCGGCAggg                                                                                                                                                                                                               >  1:780390/1‑246 (MQ=255)
                                                accATCGGGACCAGTTTTGGCGGAAAAACCTAGAAAATCACCCCCCCCCCCTTTTCCCCACCCACACAAAAGAGATACATGACGGCCGAAATGGAGCCCCCCACCACGGCGTGTACCGAAAACAGAAAGGGTAAAAGAAAAAGGAAGTTAAATCCCGGCGGTTCGGTATTCCCCCCCAGCAGGGCGTTTAGGGTGGGGGAAAACAGAAGGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGt                                                                                                                                                                                                           <  2:388139/248‑1 (MQ=255)
                                                aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGCTAAAGTTTCGGGGAACCACAAGCCCGCCCCTTTTACCCCAATTTCCCGTGCTGCAATGAAg                                                                                                                                                                                                            >  1:644969/1‑249 (MQ=255)
                                                  cATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTTAGGTTGGGGGGATTTGGCAAACCCCCCCTTTTAACCGATTTTTCAGGGGGGCAGGGAAgga                                                                                                                                                                                                          >  1:932589/1‑247 (MQ=255)
                                                        gATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTAAAGGTGCGGGGATTAGCAAGCCCCCCACTTTTTACCCATTTTTCCGGGCGGCAGGGAAGGACAACGc                                                                                                                                                                                                    >  1:264248/1‑249 (MQ=255)
                                                          tCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGGATCAGCAAACCCCCCACCTTTTCCCGCATTTTCCGTGCGGCCGTGCAGTACATCGCTa                                                                                                                                                                                                  >  2:69392/1‑249 (MQ=255)
                                                             cgTTTTGGGGAAAAACCCTAGCCAATCAGCCCCCCCCCCTTGTCCCCCACCCCACAAAAGAGATACATCCCGGTCGACTGTGGGGCCGCCAGCCCGGCGTGTCCCACAAACAGCACGGGAAAAATGAACAGGAAGGAAAATCCCGGCGTTTGGTTAATCCCCCCCAGCATGGCGGTTAGGGTGGCGGAAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAg                                                                                                                                                                                               <  2:586568/249‑1 (MQ=255)
                                                              gTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTTAAGGTTGGGGGAACAGCAAGACCCCCCCCTTTACCCCCTTTTTCGGTGCGGCGGGGAAGGAAATCGcccaaaa                                                                                                                                                                                              >  2:372638/1‑243 (MQ=255)
                                                                      gaaaaaaCCAAGCCAACCAGCCCCCCGCCCATGTCCCCCACCCCACAAAAGAGATATATTCCGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGAAAAAAAAACAGGAAGTAAAATCCCGGCGTTTCGGAAATCCCCACCAGCTTGGCGGTTAAGGGGGCGGAAATCAGAAACCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCa                                                                                                                                                                                      <  2:244885/247‑1 (MQ=255)
                                                                               cTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTTAAGGTGCGGGGATCAGCAAACCCGCCACTTTTACCCGATTTTTCCGTGCGGCAGTGAAGTACATCGCTAAAAAAAAGCCCACGGCAcc                                                                                                                                                                              >  1:823554/1‑249 (MQ=255)
                                                                               cTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGGTGCGGGGAACAGCAAACCCGCCCCTTTTACCCCATTTTTCGGGGCGGCAGGGAAGTAAAACGCTAAAAAAAAGCCCACGGCAcc                                                                                                                                                                              >  1:866830/1‑249 (MQ=255)
                                                                                 aGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTTAAGGTTCGGGGAACAAGCAACCCCCCCCCTTTTACCCGTTTTTCGGGGGGGGAGGGAAAGACAACGCCCAAGAAAAACCCACCGCAccca                                                                                                                                                                            >  2:20135/1‑247 (MQ=255)
                                                                                     aaTCAGCCCCCCGCCCATGTTCCCCACCACACAAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCCCGGCGTGTACCGAAAACAGAAACGGTGAAATAAACAGGAAGGTAAATCCCAGCGTTTCGGTAATCCCCCCCAGCATGGCGGTTAAGGTTGCGGGAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGAtt                                                                                                                                                                       <  1:925279/250‑1 (MQ=255)
                                                                                        cAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTTAGGGTGCGGGGATCAGCAAACCCGCCCCCTTTACCCGATTTTTCGGTGCGGCAGTGAAGTACATCGCTAAAGAAAAGCCCCCCGCACCAAAGAttttt                                                                                                                                                                    >  1:147126/1‑250 (MQ=255)
                                                                                         agcccacggCCTATGTCCCCCCCCAACCCAAGGAGATACATGAGGGCCGACTTTGAGGCCACCAGCGGGGGGTGCACCGAAAACAGCAGCGGAGAAAGAAAGAGAAAGATAAATTCCAGCGGTTCGGTAATCCCCCCCAGCGTGGCGGTTAAGGTGGGGAAAAACAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTg                                                                                                                                                                   <  2:898465/242‑1 (MQ=255)
                                                                                               ccGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTTAAAGTGCGGGGAACAGACAACCCCCCCCCTTTTTCCCCATTTTTCGGGGCGGCAGGGAGGCACACACCTAAAAAAACACCACCGGCCACAAAAAtttttaaataa                                                                                                                                                              >  2:867668/1‑244 (MQ=255)
                                                                                                  cccATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGATGTGGGGATCAGCAAGACCCCCACTTTTACCCGATTTTTCGGCGCGGCAGTGAAGGAAAACGCTAAAAAAAAGCCCACCGGCCCCAAAAATTTTTGAGTAAcgg                                                                                                                                                           >  2:457517/1‑248 (MQ=255)
                                                                                                       gTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTAAAGGTTCGGGGAACAGCAAACCCCCCCCCTTTTCCCCATTTTTCGGGGCGGCAGTGGAGTACAACGCTAAAAAAAAACCCACCGCCCCCAAAATTTTTTATTTACCCTGCCgg                                                                                                                                                    >  2:495769/1‑250 (MQ=255)
                                                                                                          gCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTTAAGGTGCCGGGATTAACAAACCCGCCCCCTTTAACCCATTTTTCCGGGCGGCCGGGGAAGAACACCCCAAAAAAAATACCACCGGCCCCAAAAATTTTTAGGTACCGGTCAgggg                                                                                                                                                  >  2:201831/1‑248 (MQ=255)
                                                                                                          cccccccACACCAAAGATAACCATTACGGCCGCAATGGAGGCCGCCAGCACGGGGTGTACCGAAAACAGCAACGGTAAAATGAACAGGAAGGTAAACTCCAGCGGTTCGATAATCCCCACCAGCATGGCGTTTAAGGTTGCGGGAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGc                                                                                                                                                  <  2:117246/248‑1 (MQ=255)
                                                                                                             cccccacacaaAAGAAATACATTCCGGTCGACATTGGGGCCGCCACCACGGGGTGTCCCGCAAACAGCAACGGTAAAATAAAAAGAAAGTAAAATCCCGGGGGTTGGGTAATCCCCCCCAGCATGGGGGTAAGGTTTGGGGGAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCaaa                                                                                                                                               <  1:701002/247‑1 (MQ=255)
                                                                                                                    accaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGGTGCGGGGATCAGCAAACCCGCCACTTTTTCCCGATTTTTCGGTGGGGGAGGGGAGTACATCGCTAAAAAAAAGCCCACAGCACCAAAGATTTTTTTGGTACCGTGCAGGGCAAAAACGCCt                                                                                                                                        >  1:621112/1‑250 (MQ=255)
                                                                                                                       aaaaataaaCATTCGGGCCGACATGGAGCCCCCCAGCACGGGGTGCACCGAAAACAGAAACGGGAAAAGGAACAGGAATGAAACTCCCGGCGGTTCGGTATTCCCCCCAGCCGTGGCGTTTAGGTTGGCGGAAACCAGCACGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTcc                                                                                                                                     <  2:250803/242‑1 (MQ=255)
                                                                                                                        aaGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGGAACAGCAAACCCCCCCCTTTTTCCCGATTTTCCGGGGCGGCAGGGGAGTACAACGCTAAAGAAAAACCCACGGCACCAAAAAATTTTTAGGTTCCGTGCAGGGCAAAACCGCCTTCCg                                                                                                                                    >  1:932704/1‑250 (MQ=255)
                                                                                                                        aaGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTTAAGTTGGGGGGAACAGCAAACCCCCCCCTTTTTTCCGCTTTTTCCGTGCGGCGGTGGAGTAAATAGCCTAAAAAAAACCCCCCGCACCCAAAAATTTTTAGTTTCCGGGCAGGGGGAAAACCGCCTccc                                                                                                                                     >  2:782750/1‑250 (MQ=255)
                                                                                                                                cATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTTAAGGTGCGGGGATCCGCCAACCCCCCCCTTTTTCCCCATTTTTCGGTGCGGCAGTGAAGTACATCGCCAAACAAAAGCCCACCGCACCAAAGAATTTTGATTTAACCGGCACGGCAAAAACCCCTTTCCGGgacaa                                                                                                                             >  2:207271/1‑249 (MQ=255)
                                                                                                                                 atcaCGGTCGACATTGGGCCCGCCAGCACGGGGTGTCCCAAAAACAGCAGCGGTAAAAAGAAGAGGAAGATAAATTCCGGGGGTTCGGAAATCCCCCCCAGCAGGGCGGTTAGGGTGGGGGAAACCAGAAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACg                                                                                                                           <  2:924643/247‑1 (MQ=255)
                                                                                                                                   tACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTAAAGGTGCGGGGATCAACCAACCCCCCCCCTTTTACCCATTTTTCCGGGCGGCAGGGGAAGACATCGCTAAAAAAAAGCCCACGGCCCCAAAACATTTTTAGGTACCGGGGAGGGGCAAAACGCCATCCCGGGaaaa                                                                                                                              >  2:589706/1‑244 (MQ=255)
                                                                                                                                       gTCGACATGGAGCCCGCCAGCCCGGCGTGTCCCGAAAACAGCAAGGGTAAAATGAACAGGAAGTTAATTCCCAGCGTTTCGTTAATCCCCACCAGCAGGGCGGTTAAGGTGGCGGGAACCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCa                                                                                                                     <  1:900536/250‑1 (MQ=255)
                                                                                                                                        tCGACATGGGGGCCGCCAGCCGGGTGTGTCCCGCAAACAGCAAGGGTAAAATAAACAGGAAGATAAATCCCAGGGGTTCGGTAATCCCCACCAGCAGGGGGTTTAAGGTTGGGGAAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAg                                                                                                                    <  1:1289/250‑1 (MQ=255)
                                                                                                                                          gACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGGATCAGCAAGCCCGCCCCTTTTACCCGATTTTTCGGTGCGGCAGTGAAGTACATCGCTAAAAAAAAGCCCACGGCACCAAAAATTTTTTAGTTACCGTGCAGGGCAAAAACGCCTTCCGGGGACAACGATTTCAGCg                                                                                                                  >  1:191044/1‑250 (MQ=255)
                                                                                                                                          gACATGGGGGCCCCCAGCAGGGGGTGTCCCGAAAACAGAAAGGGTAAAATAAAAAGGAAGGTAAATCCCAGCGGTTCGTTAATCCCCCCCAGCATGGCGGTAAGGTTGGGGGGAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCg                                                                                                                  <  1:490412/250‑1 (MQ=255)
                                                                                                                                                     cgccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGGTGCGGGGATCAGCAAACCCGCCACTTTTACCCGATTTTTCGGTGCGGCAGGGAAGGACATCGCTAAAAAAAATCCCACGGCACCAAAGATTTTTTAGTTACCGTGCAGGGCAAAACCCCCCTCCGGGAACAAAGATTTTAGCGGCCCGgggcc                                                                                                       >  1:190489/1‑248 (MQ=255)
                                                                                                                                                            gcGGCGTGTACCGCAAACAACAAGGGGAAAATAAACAGGAAGGTAAATTCCGGGGGTTCGGTAATCCCCACCAGCATGGGGGTTAAGGTGGGGGGAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGa                                                                                               <  1:186731/249‑1 (MQ=255)
                                                                                                                                                                 gtgtACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTAAGGTTGCGGGGATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGGAGTGGAGGAAATCGCTAAAGAAAAACCCACGGCACCAAAGATTTTTTAGTTACCGTGCAGGGCAAAAACGCCTTCCGGGGACAACGATTTCAGCGGCTCCGCGGCCCAAACtcacaac                                                                                           >  2:648464/1‑244 (MQ=255)
                                                                                                                                                                        caaaaCAGCAACGTTAAAAGAAACAGGAAGGAAAATTCCGGCGTTTCGGTAATCCCCACCAGCAGGGCGTTTAAGGTGGCGGAAACCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGTTCAAACTGAACTCTTGCAGAt                                                                                   <  1:952576/248‑1 (MQ=255)
                                                                                                                                                                         aaaaCAGAAACGGTGAAATGAACAGGAAGGTAAATTCCGGCGGTTCGGTAATCCCCCCCAGCTTGGGGGTAAGGGTTGCGGAAATAAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtg                                                                                 <  1:647200/249‑1 (MQ=255)
                                                                                                                                                                            aCAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGGACATCGCTAAAGAAATGCCCCCGGCACCCAAGATTTTTGAGTTAACGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCCCGGCGCCCCAACCGAACTCTTTCAGAtggcg                                                                              >  1:922604/1‑247 (MQ=255)
                                                                                                                                                                            aCAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAAGTTGCGGGGATCAGCAAGCCCCCCACTTTTACCCGATTTTCCGGTGCGGCAGGGAAGGACAACGCCAAAAAAATGCCCACGGCACCAAAGATTTTTTAGTTACCGGGGAGGGGAAAACCGCCTTCCGGGGAAAACGAATTTAACGGCTCGGGGCGCAAACTCAACCCCTTCCGAtgctg                                                                              >  2:492974/1‑250 (MQ=255)
                                                                                                                                                                                           tGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGGTGCGGGGATCAGCAAGCCCGCCACTTTTACCCGATTTTTCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTTAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCCGGGCTCCAACTGGACTCTTGCCGATGCTGCGCCCCGTACAACt                                                                >  1:147332/1‑249 (MQ=255)
                                                                                                                                                                                           aaaaagagAAAGTAAAGTCCCGGGGTTTCGGTAACCCCCCCTAGCGGGGCGGTAAGGTTGGGGAAAACCAGAAACCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCt                                                                <  2:50195/243‑1 (MQ=255)
                                                                                                                                                                                              aCAGGAGGTAAATTCCCGGGGGTGCGATACTCCCCACCAGCAGGGCGGTTAAGGTGGCGGAAATCAGCAGCCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCACTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAAt                                                            <  2:147126/250‑1 (MQ=255)
                                                                                                                                                                                                           ttCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGGATCAGCCAGCCCGCCCCTTTTTTCCGATTTTTCGGGGCGGGAGGGGAGGACATCGCTAAAAAAAAGCCCACGGCACCAAAAAATTTTTAGTTACCGGGCAGGGGCAAAACCCCTTCCGGGAAAAAAGATTTTCGCGGCGCCGCGCGCAAACACAAATCTTGCAGACGCTGCGCCCCGCACCAATGACTGCCGCCCCCAAcc                                              >  2:363031/1‑249 (MQ=255)
                                                                                                                                                                                                                   ggTTCGGTAATTCCCACCAGCATGGCGGTTAAGGGTGCGGGGATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGGGAAGTACATCGCTAAAAAAATGCCCACGGCCCCAAAGATTTTTTAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGGACAACGATTTCAGCGGCTCGGCGCCCCAAATGAAATCTTGCAGATGCTGCGCCCCGTACATCTGAATGCCGCCTTCAACAGCTGccc                                       >  1:681539/1‑249 (MQ=255)
                                                                                                                                                                                                                                  ccagccaactGGCGGTAAAAGGTGGGGGGAAGCAGCAGGGCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGAt                             <  1:132139/239‑1 (MQ=255)
                                                                                                                                                                                                                                   accaGCATGGCGGTTAAGGGTGCGGGGATCAGCAAGCCCGCCCCTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAAAGCCCACGGCACCAAAGATTTTTTAGTTACCGTGCAGGGCAAAAACGCCTTCCGGGAACAACGATTTCAGCGGCTCCGGGGCCAAAAAGGAAACTTTCAGAAGGCGCGCCCAAGACATCTTGATGCCCCCCTTCACCAACGGCCCGCCCAAAAATAAAc                         >  2:932636/1‑250 (MQ=255)
                                                                                                                                                                                                                                     caGCATGGCGGTTAAGGTTGCGGGAATCAGCAAGCCCGCCCCTTTTACCCGATTTTTCGGGGCGGCAGTGAAGGACATCGCTAAAGAAATGCCCACGGCACCCAAGATTTTTTAGTTACCGTGCAGGGGAAAAACGCCCTCCCGGAAAAACGATTTCAGCGGCTCGGGGCTCAAACCGAAATCTTTCAGATGGCTGGCCCCCGACATCTGGAAGCCGCCCTCAACAGACGCCGGGCCCAAGaacaaatgt                      >  2:280501/1‑242 (MQ=255)
                                                                                                                                                                                                                                            ggCGGTTAGGGTGGCGGGAATCAGCAGGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAg                <  1:708225/250‑1 (MQ=255)
                                                                                                                                                                                                                                             gggggTAAAGTTGGCGGGAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAg                <  1:932269/247‑1 (MQ=255)
                                                                                                                                                                                                                                              cGGTTAAGGTGGGGGGAAACAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGAt              <  2:265888/250‑1 (MQ=255)
                                                                                                                                                                                                                                                 gTTAGGGTGGCGGAACTCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGa            <  2:264248/250‑1 (MQ=255)
                                                                                                                                                                                                                                                   ttAGGGTGGGGGAAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGaa           <  1:224202/250‑1 (MQ=255)
                                                                                                                                                                                                                                                      aaGGTTGCGGGAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAgt         >  1:949908/1‑250 (MQ=255)
                                                                                                                                                                                                                                                        ggTTGCGGAAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAgtgg       <  1:28882/250‑1 (MQ=255)
                                                                                                                                                                                                                                                             gCGGGAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGgtgt    <  1:588699/249‑1 (MQ=255)
                                                                                                                                                                                                                                                              cGGGAACCAGCACCCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTGTaa  <  2:619209/250‑1 (MQ=255)
                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                
CACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGCGGGAATCAGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTGTAA  >  NZ_CP009273/3855780‑3856273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: