Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 3,856,028 | 0 | A | G | 41.8% | 66.5 / 21.9 | 67 | pseudogene (936/1617 nt) | BW25113_RS19145 | PTS sugar transporter subunit IIB |
Reads supporting (aligned to +/- strand): ref base A (8/31); new base G (28/0); total (36/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.35e-12 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTGTAA > NZ_CP009273/3855780‑3856273 | cacaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑Gaa < 1:472686/250‑1 (MQ=255) caACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GAATc < 2:784027/250‑1 (MQ=255) cAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GAATC‑AG‑C‑aa < 2:148634/250‑1 (MQ=255) aTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGTCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GAATC‑AG‑C‑AAGc < 2:775338/250‑1 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GAATC‑AG‑C‑AAGcc < 1:150474/250‑1 (MQ=255) atCCGCGTGGTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAAGTT‑GGGG‑GGATA‑AG‑CGAACCCCCCCCC‑TTTTCCCCC‑Tttttt > 2:479552/1‑249 (MQ=255) cgcgTGGTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGGT‑GCGG‑GGATC‑AG‑C‑CAGCCCCCCCC‑CTTTTCCCG‑Atttttccgt > 1:661891/1‑245 (MQ=255) gggTGGTTGCGGACCACCGGGATCCAGTTGT‑GCGGTAAAA‑CCTAGTCAACCAGCCCCCCCCCCTTGTTGCCCC‑CCACACAAAAGAGATACATTACGGCCGACATGGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTAAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATCCCCCCCAG‑CATGGC‑GG‑TT‑AGGGTG‑GCGG‑GAACC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTg < 2:239598/248‑1 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑GT‑TAGGGT‑GGGG‑GAATCAAC‑C‑AAGCCC‑CCAC‑TTTTACCCG‑CATTTTCGGGGCgg > 2:808130/1‑250 (MQ=255) ggTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑TAAGGT‑GCGG‑GGAAC‑AA‑C‑AAAACCCCCAC‑TTTTTCACC‑AATTTTCGGGGCgg > 1:404078/1‑249 (MQ=255) ggTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGGT‑GCGG‑GGATC‑AG‑C‑AAGCCCGCCAC‑CTTTACCCG‑ATTTTCCGGGGCgg > 1:619209/1‑249 (MQ=255) ggTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAAGTT‑GCGG‑GGATC‑AG‑C‑AAACCCGCCAC‑TTTTACCCC‑ATTTTTCGGggcgg‑c > 1:586568/1‑250 (MQ=255) tGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAAGGT‑GCGG‑GAATC‑AG‑G‑AAACCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAggg > 1:780390/1‑246 (MQ=255) accATCGGGA‑CCAGTTTTGGCGGAAAAA‑CCTAGAAAATCA‑CCCCCCCCCCCTTTTCCCCACCCACACAAAAGAGATACATGACGGCCGAAATGGAGCCCCCCACCACGGCGTGTACCGAAAACAGAAAGGGTAAAAGAAAAAGGAAGTTAAATC‑CCGGCGG‑TTCGGTATTCCCCCCCAG‑CAGGGC‑GT‑TT‑AGGGTG‑GGGG‑AAAAC‑AG‑A‑AGGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGt < 2:388139/248‑1 (MQ=255) aaCATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑CT‑AAAGTT‑TCGG‑GGAAC‑CA‑C‑AAGCCCGCCCC‑TTTTACCCC‑AATTTCCCGTGCTG‑CAATGAAg > 1:644969/1‑249 (MQ=255) cATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑TAGGTTGGGGG‑GATTT‑GG‑C‑AAACCC‑CCCC‑TTTTAACCG‑ATTTTTCAGGGGGG‑CAGGGAAgga > 1:932589/1‑247 (MQ=255) gATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑GT‑AAAGGT‑GCGG‑GGATT‑AG‑C‑AAGCCCCCCACTTTTTACCCA‑TTTTTCCGG‑GCGG‑CAGGGAAGGACAACGc > 1:264248/1‑249 (MQ=255) tCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GGATC‑AG‑C‑AAACCCCCCAC‑CTTTTCCCGCATTTTCC‑GTGCGG‑CCGTGCAGTACATCGCTa > 2:69392/1‑249 (MQ=255) cgTTTT‑GGGGAAAAACCCTAGCCAATCAGCCCCCCCCCCTTGTCCCCCA‑CCCCACAAAAGAGATACATCCCGGTCGACTGTGGGGCCGCCAGCCCGGCGTGTCCCACAAACAGCACGGGAAAAATGAACAGGAAGGAAAATC‑CCGGCGT‑TTGGTTAATCCCCCCCAG‑CATGGC‑GG‑TT‑AGGGTG‑GCGG‑AAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAg < 2:586568/249‑1 (MQ=255) gTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGCGGG‑TT‑AAGGTT‑GGGG‑GAA‑C‑AG‑C‑AAGACCCCCCC‑CTTTACCCC‑CTTTTTCGGTGCGG‑CGGGGAAGGAAATCGcccaaaa > 2:372638/1‑243 (MQ=255) gaaaaaa‑CCAAGCCAACCAGCCCCCCGCCCATGTCCCCCA‑CCCCACAAAAGAGATATATTCCGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGAAAAAAAAACAGGAAGTAAAATC‑CCGGCGT‑TTCGGAAATCCCCACCAG‑CTTGGC‑GG‑TT‑AAGGGG‑GCGG‑AAATC‑AG‑A‑AACCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCa < 2:244885/247‑1 (MQ=255) cTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑TAAGGT‑GCGG‑GGATC‑AG‑C‑AAACCCGCCAC‑TTTTACCCG‑ATTTTTCCGTGCGG‑CAGTGAAGTACATCGCTAAAAAAAAGCCCA‑CGGCAcc > 1:823554/1‑249 (MQ=255) cTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGGT‑GCGG‑GGAAC‑AG‑C‑AAACCCGCCCC‑TTTTACCCC‑ATTTTTCGGGGCGG‑CAGGGAAGTAAAACGCTAAAAAAAAGCCCA‑CGGCAcc > 1:866830/1‑249 (MQ=255) aGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GGTTT‑AAGGTT‑CGGG‑GAACA‑AG‑C‑AACCCCCCCCC‑TTTTACCCG‑‑TTTTTCGGGGGGG‑GAGGGAAAGACAACGCCCAAGAAAAACCCA‑CCGCAccca > 2:20135/1‑247 (MQ=255) aaTCAGCCCCCCGCCCATGTTCCCCA‑CCACACAAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCCCGGCGTGTACCGAAAACAGAAACGGTGAAATAAACAGGAAGGTAAATC‑CCAGCGT‑TTCGGTAATCCCCCCCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGAtt < 1:925279/250‑1 (MQ=255) cAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑TAGGGT‑GCGG‑GGATC‑AG‑C‑AAACCCGCCCC‑CTTTACCCG‑ATTTTTCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAAAGCCCC‑CCGCACCAAAGAttttt > 1:147126/1‑250 (MQ=255) agcccacggCCTATGTCCCCCC‑CCAACCCAAGGAGATACATGAGGGCCGACTTTGAGGCCACCAGCGGGGGGTGCACCGAAAACAGCAGCGGAGAAAGAAAGAGAAAGATAAATT‑CCAGCGG‑TTCGGTAATCCCCCCCAG‑CGTGGC‑GG‑TT‑AAGGTG‑GGGA‑AAAAC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTg < 2:898465/242‑1 (MQ=255) ccGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGCGGG‑TT‑AAAG‑T‑GCGG‑GGAAC‑AGAC‑AACCCCCCCCC‑TTTTTCCCC‑ATTTTTCGGGGCGG‑CAGGGAGGCACACACCTAAAAAAACACCAC‑CGGCCACAAAAAtttttaaataa > 2:867668/1‑244 (MQ=255) cccATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGAT‑GTGG‑GGATC‑AG‑C‑AAGACCCCCAC‑TTTTACCCG‑ATTTTTCGGCGCGG‑CAGTGAAGGAAAACGCTAAAAAAAAGCCCACCGGCCCCAAAAATTTTTGAGTAAcgg > 2:457517/1‑248 (MQ=255) gTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑GT‑AAAGGT‑TCGG‑GGAAC‑AG‑C‑AAACCCCCCCC‑CTTTTCCCC‑ATTTTTCGGGGCGG‑CAGTGGAGTACAACGCTAAAAAAAAACCCA‑CCGCCCCCAAAATTTTTTATTTACCCTGCC‑gg > 2:495769/1‑250 (MQ=255) gCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑TAAGGT‑GCCG‑GGATT‑AA‑C‑AAACCCGCCCC‑CTTTAACCC‑ATTTTTCCGGGCGGCCGGGGAAGAACACCCCAAAAAAAATACCAC‑CGGCCCCAAAAATTTTT‑AGGTACCGGTCA‑gggg > 2:201831/1‑248 (MQ=255) ccccc‑ccACACCAAAGATAACCATTACGGCCGCAATGGAGGCCGCCAGCACGGGGTGTACCGAAAACAGCAACGGTAAAATGAACAGGAAGGTAAACT‑CCAGCGG‑TTCGATAATCCCCACCAG‑CATGGC‑GT‑TT‑AAGGTT‑GCGG‑GAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGc < 2:117246/248‑1 (MQ=255) cccccacacaaAAGAAATACATTCCGGTCGACATTGGGGCCGCCACCACGGGGTGTCCCGCAAACAGCAACGGTAAAATAAAAAGAAAGTAAAATC‑CCGGGGG‑TTGGGTAATCCCCCCCAG‑CATGGG‑GG‑TA‑AGGTTT‑GGGG‑GAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCaaa < 1:701002/247‑1 (MQ=255) accaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGGT‑GCGG‑GGATC‑AG‑C‑AAACCCGCCAC‑TTTTTCCCG‑ATTTTTCGGTGGGG‑GAGGGGAGTACATCGCTAAAAAAAAGCCCA‑CAGCACCAAAGATTTTTTTGGTACCGTGCA‑GGGCAAAAACGCCt > 1:621112/1‑250 (MQ=255) aaaaataaaCATTCGGGCCGACATGGAGCCCCCCAGCACGGGGTGCACCGAAAACAGAAACGGGAAAAGGAACAGGAATGAAACTC‑CCGGCGG‑TTCGGT‑ATTCCCCCCAGCCGTGGC‑GT‑TT‑AGGTTG‑GCGG‑AAACC‑AG‑C‑ACGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTcc < 2:250803/242‑1 (MQ=255) aaGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GGAAC‑AG‑C‑AAACCCCCCCC‑TTTTTCCCG‑ATTTTCCGGGGCGG‑CAGGGGAGTACAACGCTAAAGAAAAACCCA‑CGGCACCAAAAAATTTTTAGGTTCCGTGCA‑GGGCAAAACCGCCTTCCg > 1:932704/1‑250 (MQ=255) aaGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑GT‑TAAGTT‑GGGG‑GGAAC‑AG‑C‑AAACCCCCCCC‑TTTTTTCCG‑CTTTTTCCGTGCGG‑CGGTGGAGTAAATAGCCTAAAAAAAACCCC‑CCGCACCCAAAAATTTTTAGTTTCCGGGCAGGGGGAAAACCGCCTccc > 2:782750/1‑250 (MQ=255) cATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑TAAGGT‑GCGG‑GGATC‑CG‑C‑CAACCCCCCCC‑TTTTTCCCC‑ATTTTTCGGTGCGG‑CAGTGAAGTACATCGCCAAACAAAAGCCCA‑CCGCACCAAAGAATTTTGATTTAACCGGCA‑CGGCAAAAACCCCTTTCCGGgacaa > 2:207271/1‑249 (MQ=255) atcaCGGTCGACATTGGGCCCGCCAGCACGGGGTGTCCCAAAAACAGCAGCGGTAAAAAGAAGAGGAAGATAAATT‑CCGGGGG‑TTCGGAAATCCCCCCCAG‑CAGGGC‑GG‑TT‑AGGGTG‑GGGG‑AAACC‑AG‑A‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACg < 2:924643/247‑1 (MQ=255) tACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑GT‑AAAGGT‑GCGG‑GGATCAAC‑C‑AACCCCCCCCC‑TTTTACCCA‑TTTTTCCGG‑GCGG‑CAGGGGAAGACATCGCTAAAAAAAAGCCCA‑CGGCCCCAAAACATTTTTAGGTACCGGGGAGGGGCAAAACGCCATCCCGGGaaaa > 2:589706/1‑244 (MQ=255) gTCGACATGGAGCCCGCCAGCCCGGCGTGTCCCGAAAACAGCAAGGGTAAAATGAACAGGAAGTTAATTC‑CCAGCGT‑TTCGTTAATCCCCACCAG‑CAGGGC‑GG‑TT‑AAGGTG‑GCGG‑GAACC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCa < 1:900536/250‑1 (MQ=255) tCGACATGGGGGCCGCCAGCCGGGTGTGTCCCGCAAACAGCAAGGGTAAAATAAACAGGAAGATAAATC‑CCAGGGG‑TTCGGTAATCCCCACCAG‑CAGGGG‑GT‑TT‑AAGGTT‑GGGG‑AAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAg < 1:1289/250‑1 (MQ=255) gACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GGATC‑AG‑C‑AAGCCCGCCCC‑TTTTACCCG‑ATTTTTCGGTGCGG‑CAGTGAAGTACATCGCTAAAAAAAAGCCCA‑CGGCACCAAAAATTTTTTAGTTACCGTGCA‑GGGCAAAAACGCCTTCCGGGGACAACGATTTCAGCg > 1:191044/1‑250 (MQ=255) gACATGGGGGCCCCCAGCAGGGGGTGTCCCGAAAACAGAAAGGGTAAAATAAAAAGGAAGGTAAATC‑CCAGCGG‑TTCGTTAATCCCCCCCAG‑CATGGC‑GG‑‑T‑AAGGTTGGGGG‑GAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCg < 1:490412/250‑1 (MQ=255) cgccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGGT‑GCGG‑GGATC‑AG‑C‑AAACCCGCCAC‑TTTTACCCG‑ATTTTTCGGTGCGG‑CAGGGAAGGACATCGCTAAAAAAAATCCCA‑CGGCACCAAAGATTTTTTAGTTACCGTGCA‑GGGCAAAACCCCCCTCCGGGAACAAAGATTTTAGCGGCCCGgg‑gcc > 1:190489/1‑248 (MQ=255) gcGGCGTGTACCGCAAACAACAAGGGGAAAATAAACAGGAAGGTAAATT‑CCGGGGG‑TTCGGTAATCCCCACCAG‑CATGGG‑GG‑TT‑AAGGTG‑GGGG‑GAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGa < 1:186731/249‑1 (MQ=255) gtgtACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑GT‑AAGGTT‑GCGG‑GGATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑GAGTGGAGGAAATCGCTAAAGAAAAACCCA‑CGGCACCAAAGATTTTTTAGTTACCGTGCA‑GGGCAAAAACGCCTTCCGGGGACAACGATTTCAGCGGCTCCGCGGCCCAAACtcacaac > 2:648464/1‑244 (MQ=255) caaaaCAGCAACGTTAAAAGAAACAGGAAGGAAAATT‑CCGGCGT‑TTCGGTAATCCCCACCAG‑CAGGGC‑GT‑TT‑AAGGTG‑GCGG‑AAACC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GTTCAAACTGAACTCTTGCAGAt < 1:952576/248‑1 (MQ=255) aaaaCAGAAACGGTGAAATGAACAGGAAGGTAAATT‑CCGGCGG‑TTCGGTAATCCCCCCCAG‑CTTGGG‑GG‑TA‑AGGGTT‑GCGG‑AAATA‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAt‑g < 1:647200/249‑1 (MQ=255) aCAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGGACATCGCTAAAGAAATGCCCC‑CGGCACCCAAGATTTTTGAGTTAACGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCCCGGC‑GCCCCAACCGAACTCTTTCAGAt‑ggcg > 1:922604/1‑247 (MQ=255) aCAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAAGTT‑GCGG‑GGATC‑AG‑C‑AAGCCCCCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGGGAAGGACAACGCCAAAAAAATGCCCA‑CGGCACCAAAGATTTTTTAGTTACCGGGGA‑GGGGAAAACCGCCTTCCGGGGAAAACGAATTTAACGGCTCGGG‑GCGCAAACTCAACCCCTTCCGAt‑gctg > 2:492974/1‑250 (MQ=255) tGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGGT‑GCGG‑GGATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTTCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTTAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCCGG‑GCTCCAACTGGACTCTTGCCGAT‑GCTGCGCCCCGTACAACt > 1:147332/1‑249 (MQ=255) aaaaagagAAAGTAAAGT‑CCCGGGGTTTCGGTAACCCCCCCTAG‑CGGGGC‑GG‑‑T‑AAGGTT‑GGGGAAAACC‑AG‑A‑AACCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCt < 2:50195/243‑1 (MQ=255) aCAGG‑AGGTAAATTCCCGGGGG‑TGCGATACTCCCCACCAG‑CAGGGC‑GG‑TT‑AAGGTG‑GCGG‑AAATC‑AG‑C‑AGCCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑ACTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAAt < 2:147126/250‑1 (MQ=255) tt‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GGATC‑AG‑C‑CAGCCCGCCCC‑TTTTTTCCG‑ATTTTTCGGGGCGG‑GAGGGGAGGACATCGCTAAAAAAAAGCCCA‑CGGCACCAAAAAATTTTTAGTTACCGGGCAGGGGCAAAACC‑CCTTCCGGGAAAAAAGATTTTCGCGGCGCCGC‑GCGCAAACACAAATCTTGCAGAC‑GCTGCGCCCCGCACCAATGACTG‑CCGCCCCCAAcc > 2:363031/1‑249 (MQ=255) gg‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGGT‑GCGG‑GGATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGGGAAGTACATCGCTAAAAAAATGCCCA‑CGGCCCCAAAGATTTTTTAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGGACAACGATTTCAGCGGCTCGGC‑GCCCCAAATGAAATCTTGCAGAT‑GCTGCGCCCCGTACATCTGAATG‑CCGCCTTCAACAGCTGccc > 1:681539/1‑249 (MQ=255) ccagccaactGGC‑GG‑TAAAAGGTG‑GGGG‑GAAGC‑AG‑C‑AGGGCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGAt < 1:132139/239‑1 (MQ=255) accaG‑CATGGC‑GG‑TT‑AAGGGT‑GCGG‑GGATC‑AG‑C‑AAGCCCGCCCC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAAAGCCCA‑CGGCACCAAAGATTTTTTAGTTACCGTGCA‑GGGCAAAAACGCCTTCCGGGAACAACGATTTCAGCGGCTCCGG‑GGCCAAAAAGGAAACTTTCAGAA‑GGCGCGCCCAAGACATCTTGATGCCCCCCTTCACCAACGGCCCGCCCAAAAATAAAc > 2:932636/1‑250 (MQ=255) caG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GAATC‑AG‑C‑AAGCCCGCCCC‑TTTTACCCG‑ATTTTTCGGGGCGG‑CAGTGAAGGACATCGCTAAAGAAATGCCCA‑CGGCACCCAAGATTTTTTAGTTACCGTGCA‑GGGGAAAAACGCCCTCCCGGAAAAACGATTTCAGCGGCTCGGG‑GCTCAAACCGAAATCTTTCAGATGGCTG‑GCCCCCGACATCTGGAAG‑CCGCCCTCAACAGACGCCGGGCCCAAGaacaaatgt > 2:280501/1‑242 (MQ=255) ggC‑GG‑TT‑AGGGTG‑GCGG‑GAATC‑AG‑C‑AGGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAg < 1:708225/250‑1 (MQ=255) ggggg‑TA‑AAGTTG‑GCGG‑GAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAg < 1:932269/247‑1 (MQ=255) c‑GG‑TT‑AAGGTG‑GGGG‑GAAAC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGAt < 2:265888/250‑1 (MQ=255) g‑TT‑AGGGTG‑GCGG‑AACTC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGa < 2:264248/250‑1 (MQ=255) tt‑AGGGTG‑GGGG‑AAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGaa < 1:224202/250‑1 (MQ=255) aaGGTT‑GCGG‑GAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAgt > 1:949908/1‑250 (MQ=255) ggTT‑GCGG‑AAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAgtgg < 1:28882/250‑1 (MQ=255) gCGG‑GAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGgtgt < 1:588699/249‑1 (MQ=255) cGG‑GAACC‑AG‑C‑ACCCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTGTaa < 2:619209/250‑1 (MQ=255) | CACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTT‑GCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTGCCCA‑CCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAG‑CATGGC‑GG‑TT‑AAGGTT‑GCGG‑GAATC‑AG‑C‑AAGCCCGCCAC‑TTTTACCCG‑ATTTTCCGGTGCGG‑CAGTGAAGTACATCGCTAAAGAAATGCCCA‑CGGCACCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGC‑GCTCAAACTGAACTCTTGCAGAT‑GCTGCGCCCAGTACATCTGAATG‑CCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTGTAA > NZ_CP009273/3855780‑3856273 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |