| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,145,111 | 0 | C | A | 43.1% | 88.9 / 29.2 | 54 | A149E (GCA→GAA) | yegJ | DUF2314 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base C (11/18); new base A (0/22); total (14/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.14e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAG > NZ_CP009273/2144862‑2145358 | cGATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGc < 1:510199/250‑1 (MQ=255) aCCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGGTTTTACAATTATTCTTTTTTTGTTACCC‑TTTCCAAAA‑AAAAAAACGAAGAGCCAAAAGGaaaaa > 1:231270/1‑249 (MQ=255) aCCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAAt < 1:652558/250‑1 (MQ=255) tCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGtt < 1:145474/250‑1 (MQ=255) tCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGtt < 1:271507/250‑1 (MQ=255) aCGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCg < 2:433507/250‑1 (MQ=255) aaCCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCa < 2:878861/250‑1 (MQ=255) aaCCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCa < 2:852845/250‑1 (MQ=255) gCATTTCTGGCGTACAGATGGCACTTATTCTAACGGCATGTTTAGTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGtt < 2:731173/250‑1 (MQ=255) tttCTGGCTTACGGATGTCGCTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTtata < 1:753500/250‑1 (MQ=255) ttCTGGCTTACGGATGTCACTTATTCTAACGGCATATTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTTTAACATTTGTTCTTTTTTTTTCAAC‑TCTTCCAAAAAAAAAAACGCCGAGCGAAGAGGAAAAATATATTGCTTATAACCCGTtttaa > 1:18915/1‑249 (MQ=255) tCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTatat < 1:842198/249‑1 (MQ=255) aCGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCCTTTTTTCTTTTTTTTTGACC‑CTTCCCAAAAAAGAAGACGACGAGCGAAAAGCAAAAATAGTTTTCTTATTAGCCCGTTTAtttttttttt > 1:736440/1‑250 (MQ=255) aCGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGtt < 2:271701/249‑1 (MQ=255) aCGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGtt < 2:230728/249‑1 (MQ=255) aCGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGt < 2:817477/248‑1 (MQ=255) gTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGATATTACAATTATTCTTTTTTTGTTACC‑TTTCCCAAAAAAAAAAACGACGCGACAAGAGGAAAAATAATTTGCTTATCAGCCGCCTTATTTTTTTTTTTAAA‑Tg > 1:537911/1‑250 (MQ=255) aCTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGc < 2:465950/249‑1 (MQ=255) aCTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGc < 2:239637/249‑1 (MQ=255) ttCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGa < 2:498889/250‑1 (MQ=255) aCGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑ttg < 1:380314/249‑1 (MQ=255) tGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTGTCtt < 1:32587/250‑1 (MQ=255) tttATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTGTCTTCa < 2:751944/250‑1 (MQ=255) ccctgggTATTGTAAAAAAGTAAAAATAGGGCAGGGAGGGAAAAATAAAAAAAAAAAATTTTTCAGACTGGATTTTTCCGCGGGGGAAAAAATTTTAGGGG‑GTTTATCCTTTTGTTCTTTTATTGGCCCCC‑TACCAAAAAAAAGAAGCCGACGAGTAAAGAAAAAAATTATTTCGCTAACCAGCCTTTATATTTTTTTTTAAAAC‑GGGCGG‑TTGAT‑TTTTTGTCTTCAACCGCCATGAGAAACTCActct < 2:312159/245‑1 (MQ=255) tgtaaaaaccgaaGAATATGGCCGGGAGGGAAAAATAAAAAAAGAAGATTTTGCAGGCTGGATGTATCCGCGGGGGAAAAAAATTTACGGC‑GGTTATCCCATTGATCCTTTATTGGTCACC‑TACCAAAAAAAAGAAGCCGACGAGCTAAGAGAAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTAAAAC‑GGGCGG‑TTGAA‑TTGTTGTCTTAAACCGCCATGAGAAACTCACTCTGCCCACAgc < 1:359684/237‑1 (MQ=255) gTTACAAACGTAGAATATGGCAAGGAGTGAAAAATAAAGAAAGAAGATATTCCAGACTGAATGTATACGCGGGGGAATAAAATTTACGGC‑GTTTATCCCTTTGACCCTTTATTGGTCCCT‑TATCAAAAAGAAGAAGCCGACGAGCAAAGAGAAAAATTATTTCGCTAATCAGCCTTTATATTTTTTTTTTAACC‑GGGCGG‑TTGAT‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcg < 1:362235/249‑1 (MQ=255) gTTAAAAAAGAAGAATAGGGCAAGGAGTGAAAAAAAAAAAAAGAAAATATTTCAGACTGGTTGTATCCGGGGGGGAAAAAATTTTACGGG‑GTTTATCCCTTTGTTCTTTTATTGTCCCCC‑TACCAAAAAAAAGAAGCCGACGAGCAAAGAAAAAATTTATTTCGTAAACCAGCCTTTTTTTTTTTTTTTAAACC‑GGGCGG‑TTAAT‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcg < 2:785923/249‑1 (MQ=255) aaCGTAAAATATGGCAAGGAGTGAAAAATAAAGAAAGAAGATATTTCAGACTGGTTGTATACGCGGGGGGAAAAATTTTCCGGG‑GTTTATCCCTTTGATCTTTTATTGGTCCCC‑TATCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTATTTCGCTAATCAGCCTTTATATTTATTGTTAAAAC‑GGGCGT‑TTAAA‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGc < 1:563703/250‑1 (MQ=255) caaGGAGTGAAAAATAAAAAAAAAAAATATTTGAGACGGGATGTAAACGCGGGGGAAAAAATTTTACGGC‑GTTAATCCCTTTGTTCTTTTATGGGTCCCC‑TACCAAAAAGAAGAGCCCGAGGAGCAAAGAAAAAAATTAGTTCACTAGTCCGCCGTTATTTTTATTTTAAAACC‑GGGCGG‑TAAAT‑TTGTTGTCTCAAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcat < 2:90186/248‑1 (MQ=255) aaaaaaaaaaGATATTTCAGACTGGATGTATACGCGCGGGAAAAAAATTTACGGC‑GTTTATACCATTGATCTTTTATTGGTCCCC‑TACCAAAAAAAAGAAGCCGACGACCAAAGAGAAAAATTAGTTCCCTAATCAGCCGTTATATTTTTTGTTAAAAC‑GGGCGG‑TTGAA‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGt < 1:619421/246‑1 (MQ=255) gaataTATTTAAGACTGGTTGTATACGCGGGGGAAAAAAATTTACGGG‑GGTTAACCCATTGATCTTTTATTGGTCCCC‑TACCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTAGTTCGTTAATCAGCCTTTATATTTTTTGTTAAAAC‑GGGCGG‑TTAAA‑TTGTTGTCTTAAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTAccgc < 1:259583/250‑1 (MQ=255) catatgggATGTATCCGGGGGGGAAAAAATTTTGCGGC‑TGTTATACTTTTGATCCTTTATTGGTCCCC‑TATCAAAAAGAAGAAGCCGAGGAGAAAAAAAAAAAATTTTTCCGATAATCAGCTTTTTTTTTTATT‑TTTAAACGGGGCGT‑TTGAT‑TTTTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGa < 2:651283/243‑1 (MQ=255) cAGACTGGATGTATACGCGGGGGGATAAAATTTACGGC‑GTTTATACCTTTGATCTTTTA‑TGGTCCCCTTATCAAAAAAAAGAAGCCGACGAGAAAAGAGAAAAATTATTTCGCTAACCACCCTTTATATTTATTTTTTAAAC‑GGGCGG‑TTGAA‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGa < 1:126682/249‑1 (MQ=255) cTGGTTTTATCCGCGGGGGAAAAAATTTTACGGG‑GTTAATCCCTTTGACCTTTTATGGGCCCCC‑TATCAAAAAAAAGAAGCCGACGAGAAAAGAGAAAATTTAGTCCGCAAATCAGCCTTTTTTTTTTTTTTTAAAAC‑GGGGGT‑TTAAT‑TTTTTGTCTTAAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACaaaa < 1:567777/250‑1 (MQ=255) aggggagggaaaaaatTTTACGGG‑GTTTTTACCATTGTTCTTTTATTGGTCCCC‑TAACAAAAAGAAGAACCCGAGGATAAAAAAGAAAAATTGTTCCCCTAATCAGCTTTTAT‑TTTTTTTTTTAAAC‑CGGGGGTTTGAT‑TTGTTTTCTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTaa < 2:749054/238‑1 (MQ=255) cgcgcgGGAATAAATTTTACGGC‑GGTTATACCTTTGATCTTTTATTGGTCACC‑TACAAAAAAGAAGAAGCCGACGAGCAAAGAAAAAAATTATTTCCCTAATCAGCCTTTATATTTTTTTTTTAACC‑GGGCGT‑TTAAT‑TTTTTTTCTTAAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTaa < 1:914711/249‑1 (MQ=255) ggggaaaaaaaTTTACGGG‑GGTTATCCCATTGTCCTTTTATTGGTCCCT‑TAACAAAAAAAAGAACCCGACGAGCAAAGAGAAAAATTATTTCGCTAACCAGCCTTTATTTTTATTTTTTAACC‑GGGCGG‑TTAAT‑TTTTTTTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAAtt < 1:686158/243‑1 (MQ=255) ctttACGGC‑TTTTATCCCTTTTTTCTTTTATTGTTCACC‑TCCCAAAAAAAAAAACCCGACGAGAAAAGAAAAAATTTAGTTCGTTACTCA‑CCTTTTTTTTTTTTTTTAAAAC‑CGGGGG‑TTTAATTTTTTGTCTACAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGtaataa < 2:316305/249‑1 (MQ=255) gc‑ggTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTTAA‑TTTTTGTCTTTAACCCCCATGAGAAAATCACCCTTCCCCCAGCGCCCGTGCCAACGTTTTTTCATCATCCCTCAGCCCCTTTATCGCCCGGCTGGGCAAAAACTTCTTTTACAATTCAGGTAATaaaatgagg > 2:246490/1‑244 (MQ=255) gc‑ggTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTTTTTTCTTCACCCCCCCTGAGAAAAACAATCTGCCCACAGCGCCAGTGCCCACGGTTTTTCCTCATCCCCACGCCCCCTTACCCCCCGGCTGGGCAAAAACTCCCTTTACAAATCAGGGAATAAAACCAgt > 2:653923/1‑250 (MQ=255) aTCTTTTATTGTCAACC‑TATCAAAAAAAAGAAGCCGACGAGCAAAGAAAAAATTTAGTTCGTTAATCATCTTTTATTTTTTTTTTTAAACC‑GGGCGG‑TTAAT‑TTTTTTTCTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTtgc < 2:899150/249‑1 (MQ=255) ccTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAACGCCCGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTtgctgc > 1:838392/1‑250 (MQ=255) tGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTGTTTTCAAACGCCATGAGAAAATCAATCTGCCCACAGCGCCAGGGGCAACGGTTTATCATCATCCGTACGCTCGGTTACCGCCGGGCTGGACAAAAAATGCTTTAACAAATCAGGGAATAAAAAGAGGTGTTCCTGCGTTGCTGCCGCCAgg > 1:697719/1‑249 (MQ=255) ggcccccaaccaaaaaaaaaaaGCCGAGGAGAAAAGAAAAAATTTAGTCCGCAAACCACCTTTTAT‑TTTTTTTTTTAAAC‑CGGGGG‑TTTAATTTTTTTTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGt < 1:212791/237‑1 (MQ=255) cccttATCAAAAAAAAAAAGCCGAGGAGTAAAGAAAAAAATTAGTCCGTTAATCGGCGTTTATTTTTTTTTTTAAACC‑GGGGGG‑TTAAA‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCAt < 1:528583/246‑1 (MQ=255) cccctcccaaaaaaaaaaaCCCGACGAAAAAAGAAAAAATTTGGTTCGTTAACCAGCTTTTATTTTTTTTTTTAAAAC‑GGGCGT‑TTAAT‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCAt < 1:109587/241‑1 (MQ=255) aTCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTGTCTTCAAACGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATTATCATCCGTACGCCCGTTTACCGCCGGGCTGGACAAAAAATGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTTaa > 2:617022/1‑249 (MQ=255) aagaagCCGAAGAACAAAGAGAAAAATTAGTTCGTAAATCAGCGGTTATTTTTATTGTTAAAAC‑GGGCGG‑TTAAT‑TTGTTTTCTTAAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTa < 1:486087/250‑1 (MQ=255) gaaggagaaaaGAGAAAGTTTAGTTCGTAACTCACTCTTTATATTTTTTTGTTAACG‑GGGCGT‑TTGAT‑TTGTTTTCACAACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTaaagaaag < 2:822349/241‑1 (MQ=255) acgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCTCGTTTACCTCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGGAATAAATCGAGTTGTTCCTGCGTTGCTTCCGCCAGTCCATTGAAAAACAGGGTaaagaaaag > 1:603882/1‑247 (MQ=255) gaGCAAAGAGAAAAATTAGTCCGCTAACCAGCCGTTTTTTTTTTTTTTTAACC‑TGGCGT‑TTAAT‑TTTTTGTCTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGcac < 1:685383/250‑1 (MQ=255) aGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTGTCTTTAACCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAAAGGGGTAAAGAAAGGcaca > 1:887982/1‑250 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGGCGGACAAAAAATGCTTTAACAATTCAGGGATTAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAAAGGGGGAAAAAAAGGCACAt > 1:915628/1‑248 (MQ=255) gagCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTTTCTTCCAACGCCCTGAGAAACTCACCCTGCCCACCGCGCCAGTGCCAACGTTTTTTCATTATCCGTACCCCCGTTTACCGCCGGGCCGGACAAAAAATGCTTTTACAATTCAGGTAATAAATCGAGTTTTTCCTGCGTTGCTGCCGCCCGTCCATTGGAAAACGGGGGAAAGAAAAGCACCAgagg > 2:503640/1‑249 (MQ=255) gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTGTCTTCAACCGCCCTGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTTAAAAACGGGGTAAAGAAAGGCACATgaggag > 1:356430/1‑249 (MQ=255) | CGATAACCGATCACGGAAGAACCGAGCATTTCTGGCTTACGGATGTCACTTATTCTAACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGC‑GGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAAC‑TGGCGG‑TTGAA‑TTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAG > NZ_CP009273/2144862‑2145358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |