| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,145,164 | 0 | A | T | 38.9% | 74.9 / 21.1 | 54 | intergenic (+37/+28) | yegJ/pphC | DUF2314 domain‑containing protein/protein‑serine/threonine phosphatase PphC |
| Reads supporting (aligned to +/- strand): ref base A (21/12); new base T (0/21); total (21/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.17e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTG > NZ_CP009273/2144919‑2145409 | aCGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑ttg < 1:380314/249‑1 (MQ=255) tGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCtt < 1:32587/250‑1 (MQ=255) tttATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑Ca < 2:751944/250‑1 (MQ=255) ccctgggTATTGTAAAAAAGTAAAAATAGGGCAGGGAGGGAAAAATAAAAAAAAAAAATTTTTCAGACTGGATTTTTCCGCGGGGGAAAAAATTTTAGGGGGTTTATCCTTTTGTTCTTTTATTGGCCCCC‑TACCAAAAAAAAGAAGCCGACGAGTAAAGAAAAAAATTATTTCGCTAACCAGCCTTTATATTTTTTT‑TTAAAA‑C‑GGGCGG‑TTGA‑T‑TTTTTGTCTT‑CAACCGCCATGAGAAACTCActct < 2:312159/245‑1 (MQ=255) tgtaaaaaccgaaGAATATGGCCGGGAGGGAAAAATAAAAAAAGAAGATTTTGCAGGCTGGATGTATCCGCGGGGGAAAAAAATTTACGGCGGTTATCCCATTGATCCTTTATTGGTCACC‑TACCAAAAAAAAGAAGCCGACGAGCTAAGAGAAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTAAAA‑C‑GGGCGG‑TTGA‑A‑TTGTTGTCTT‑AAACCGCCATGAGAAACTCACTCTGCCCACAgc < 1:359684/237‑1 (MQ=255) gTTACAAACGTAGAATATGGCAAGGAGTGAAAAATAAAGAAAGAAGATATTCCAGACTGAATGTATACGCGGGGGAATAAAATTTACGGCGTTTATCCCTTTGACCCTTTATTGGTCCCT‑TATCAAAAAGAAGAAGCCGACGAGCAAAGAGAAAAATTATTTCGCTAATCAGCCTTTATATTTTTTT‑TTTAAC‑C‑GGGCGG‑TTGA‑T‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAgcg < 1:362235/249‑1 (MQ=255) gTTAAAAAAGAAGAATAGGGCAAGGAGTGAAAAAAAAAAAAAGAAAATATTTCAGACTGGTTGTATCCGGGGGGGAAAAAATTTTACGGGGTTTATCCCTTTGTTCTTTTATTGTCCCCC‑TACCAAAAAAAAGAAGCCGACGAGCAAAGAAAAAATTTATTTCGTAAACCAGCCTTTTTTTTTTTTT‑TTAAAC‑C‑GGGCGG‑TTAA‑T‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAgcg < 2:785923/249‑1 (MQ=255) aaCGTAAAATATGGCAAGGAGTGAAAAATAAAGAAAGAAGATATTTCAGACTGGTTGTATACGCGGGGGGAAAAATTTTCCGGGGTTTATCCCTTTGATCTTTTATTGGTCCCC‑TATCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTATTTCGCTAATCAGCCTTTATATTTATTG‑TTAAAA‑C‑GGGCGT‑TTAA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGc < 1:563703/250‑1 (MQ=255) caaGGAGTGAAAAATAAAAAAAAAAAATATTTGAGACGGGATGTAAACGCGGGGGAAAAAATTTTACGGCGTTAATCCCTTTGTTCTTTTATGGGTCCCC‑TACCAAAAAGAAGAGCCCGAGGAGCAAAGAAAAAAATTAGTTCACTAGTCCGCCGTTATTTTTATTT‑TAAAAC‑C‑GGGCGG‑TAAA‑T‑TTGTTGTCTC‑AAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcat < 2:90186/248‑1 (MQ=255) aaaaaaaaaaGATATTTCAGACTGGATGTATACGCGCGGGAAAAAAATTTACGGCGTTTATACCATTGATCTTTTATTGGTCCCC‑TACCAAAAAAAAGAAGCCGACGACCAAAGAGAAAAATTAGTTCCCTAATCAGCCGTTATATTTTTTG‑TTAAAA‑C‑GGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGt < 1:619421/246‑1 (MQ=255) gaataTATTTAAGACTGGTTGTATACGCGGGGGAAAAAAATTTACGGGGGTTAACCCATTGATCTTTTATTGGTCCCC‑TACCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTAGTTCGTTAATCAGCCTTTATATTTTTTG‑TTAAAA‑C‑GGGCGG‑TTAA‑A‑TTGTTGTCTT‑AAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTAccgc < 1:259583/250‑1 (MQ=255) catatgggATGTATCCGGGGGGGAAAAAATTTTGCGGCTGTTATACTTTTGATCCTTTATTGGTCCCC‑TATCAAAAAGAAGAAGCCGAGGAGAAAAAAAAAAAATTTTTCCGATAATCAGCTTTTTTTTTTATT‑‑TTTAAA‑CGGGGCGT‑TTGA‑T‑TTTTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGa < 2:651283/243‑1 (MQ=255) cAGACTGGATGTATACGCGGGGGGATAAAATTTACGGCGTTTATACCTTTGATCTTTTA‑TGGTCCCCTTATCAAAAAAAAGAAGCCGACGAGAAAAGAGAAAAATTATTTCGCTAACCACCCTTTATATTTATTT‑TTTAAA‑C‑GGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGa < 1:126682/249‑1 (MQ=255) cTGGTTTTATCCGCGGGGGAAAAAATTTTACGGGGTTAATCCCTTTGACCTTTTATGGGCCCCC‑TATCAAAAAAAAGAAGCCGACGAGAAAAGAGAAAATTTAGTCCGCAAATCAGCCTTTTTTTTTTTTT‑TTAAAA‑C‑GGGGGT‑TTAA‑T‑TTTTTGTCTT‑AAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACaaaa < 1:567777/250‑1 (MQ=255) aggggagggaaaaaatTTTACGGGGTTTTTACCATTGTTCTTTTATTGGTCCCC‑TAACAAAAAGAAGAACCCGAGGATAAAAAAGAAAAATTGTTCCCCTAATCAGCTTTTAT‑TTTTTTT‑TTTAAA‑C‑CGGGGGTTTGA‑T‑TTGTTTTCTC‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTaa < 2:749054/238‑1 (MQ=255) cgcgcgGGAATAAATTTTACGGCGGTTATACCTTTGATCTTTTATTGGTCACC‑TACAAAAAAGAAGAAGCCGACGAGCAAAGAAAAAAATTATTTCCCTAATCAGCCTTTATATTTTTTT‑TTTAAC‑C‑GGGCGT‑TTAA‑T‑TTTTTTTCTT‑AAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTaa < 1:914711/249‑1 (MQ=255) ggggaaaaaaaTTTACGGGGGTTATCCCATTGTCCTTTTATTGGTCCCT‑TAACAAAAAAAAGAACCCGACGAGCAAAGAGAAAAATTATTTCGCTAACCAGCCTTTATTTTTATTT‑TTTAAC‑C‑GGGCGG‑TTAA‑T‑TTTTTTTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAAtt < 1:686158/243‑1 (MQ=255) ctttACGGCTTTTATCCCTTTTTTCTTTTATTGTTCACC‑TCCCAAAAAAAAAAACCCGACGAGAAAAGAAAAAATTTAGTTCGTTACTCA‑CCTTTTTTTTTTTTT‑TTAAAA‑C‑CGGGGG‑TTTA‑ATTTTTTGTCTA‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGtaataa < 2:316305/249‑1 (MQ=255) gcggTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTTA‑A‑TTTTTGTCTT‑TAACCCCCATGAGAAAATCACCCTTCCCCCAGCGCCCGTGCCAACGTTTTTTCATCATCCCTCAGCCCCTTTATCGCCCGGCTGGGCAAAAACTTCTTTTACAATTCAGGTAATaaaatgagg > 2:246490/1‑244 (MQ=255) gcggTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTTTTTTCTT‑CACCCCCCCTGAGAAAAACAATCTGCCCACAGCGCCAGTGCCCACGGTTTTTCCTCATCCCCACGCCCCCTTACCCCCCGGCTGGGCAAAAACTCCCTTTACAAATCAGGGAATAAAACCAgt > 2:653923/1‑250 (MQ=255) aTCTTTTATTGTCAACC‑TATCAAAAAAAAGAAGCCGACGAGCAAAGAAAAAATTTAGTTCGTTAATCATCTTTTATTTTTTTTT‑TTAAAC‑C‑GGGCGG‑TTAA‑T‑TTTTTTTCTC‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTtgc < 2:899150/249‑1 (MQ=255) ccTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAACGCCCGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTtgctgc > 1:838392/1‑250 (MQ=255) tGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTTTT‑CAAACGCCATGAGAAAATCAATCTGCCCACAGCGCCAGGGGCAACGGTTTATCATCATCCGTACGCTCGGTTACCGCCGGGCTGGACAAAAAATGCTTTAACAAATCAGGGAATAAAAAGAGGTGTTCCTGCGTTGCTGCCGCCAgg > 1:697719/1‑249 (MQ=255) ggcccccaaccaaaaaaaaaaaGCCGAGGAGAAAAGAAAAAATTTAGTCCGCAAACCACCTTTTAT‑TTTTTTT‑TTTAAA‑C‑CGGGGG‑TTTA‑ATTTTTTTTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGt < 1:212791/237‑1 (MQ=255) cccttATCAAAAAAAAAAAGCCGAGGAGTAAAGAAAAAAATTAGTCCGTTAATCGGCGTTTATTTTTTTTT‑TTAAAC‑C‑GGGGGG‑TTAA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCAt < 1:528583/246‑1 (MQ=255) cccctcccaaaaaaaaaaaCCCGACGAAAAAAGAAAAAATTTGGTTCGTTAACCAGCTTTTATTTTTTTTT‑TTAAAA‑C‑GGGCGT‑TTAA‑T‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCAt < 1:109587/241‑1 (MQ=255) aTCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAAACGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATTATCATCCGTACGCCCGTTTACCGCCGGGCTGGACAAAAAATGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTTaa > 2:617022/1‑249 (MQ=255) aagaagCCGAAGAACAAAGAGAAAAATTAGTTCGTAAATCAGCGGTTATTTTTATTG‑TTAAAA‑C‑GGGCGG‑TTAA‑T‑TTGTTTTCTT‑AAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTa < 1:486087/250‑1 (MQ=255) gaaggagaaaaGAGAAAGTTTAGTTCGTAACTCACTCTTTATATTTTTTT‑GTTAAC‑G‑GGGCGT‑TTGA‑T‑TTGTTTTCAC‑AACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTaaagaaag < 2:822349/241‑1 (MQ=255) acgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCTCGTTTACCTCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGGAATAAATCGAGTTGTTCCTGCGTTGCTTCCGCCAGTCCATTGAAAAACAGGGTaaagaaaag > 1:603882/1‑247 (MQ=255) gaGCAAAGAGAAAAATTAGTCCGCTAACCAGCCGTTTTTTTTTTTT‑TTTAAC‑C‑TGGCGT‑TTAA‑T‑TTTTTGTCTC‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGcac < 1:685383/250‑1 (MQ=255) aGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑TAACCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAAAGGGGTAAAGAAAGGcaca > 1:887982/1‑250 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGGCGGACAAAAAATGCTTTAACAATTCAGGGATTAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAAAGGGGGAAAAAAAGGCACAt > 1:915628/1‑248 (MQ=255) gagCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTTTCTT‑CCAACGCCCTGAGAAACTCACCCTGCCCACCGCGCCAGTGCCAACGTTTTTTCATTATCCGTACCCCCGTTTACCGCCGGGCCGGACAAAAAATGCTTTTACAATTCAGGTAATAAATCGAGTTTTTCCTGCGTTGCTGCCGCCCGTCCATTGGAAAACGGGGGAAAGAAAAGCACCAgagg > 2:503640/1‑249 (MQ=255) gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCCTGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTTAAAAACGGGGTAAAGAAAGGCACATgaggag > 1:356430/1‑249 (MQ=255) aaaTTAGTCCGATAATCAGCCTTTATATTTATTG‑TTAAAA‑C‑GGGGGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAAtt < 1:106685/250‑1 (MQ=255) tttCGCAAATCAGCCTTTATATTTATTG‑TTAAAA‑C‑GGGCGG‑TTAA‑T‑TTTTTGTCTC‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCa < 1:142077/248‑1 (MQ=255) gTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAAACGCCCTTAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATTATCATCCGTACGCCCGTTTTCCGCCGGGCTGGGCAAAAACTGCTTTAACAATTCAGGGAATAAAACGAGTTTTTTCTGCGTTGCTGCCGCCAGTCCCTTGAAAAACGGGGTAAAGAAAAGGACATTAGGAGAATTAACCAg > 2:689705/1‑250 (MQ=255) ttCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCCTGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGGAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGGAAAGAAAGGCACATGAGGAGAATTATCCAg > 1:633329/1‑249 (MQ=255) atctggctttttttttttt‑tttAAAGC‑GGGCGT‑TTAA‑T‑TTGTTGTCTT‑CACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTa < 2:565202/238‑1 (MQ=255) catcgtttattttttGTTTTAAA‑C‑CGGGGG‑TTTAGT‑TTTTTCTCTC‑CACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACGATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAAc < 2:13107/243‑1 (MQ=255) ttttttttttG‑TTAAAT‑C‑GGGCTG‑TT‑A‑T‑TTTTTTTCTTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGt < 2:208071/245‑1 (MQ=255) ttttttttt‑tTAAAA‑C‑TGGCGT‑TTAA‑T‑TTGTTTTCTC‑CACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCg < 1:660525/247‑1 (MQ=255) ttttttt‑tttAAACC‑GGGCGG‑TTGA‑T‑TTGTTTTCTT‑CACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGc < 1:494908/249‑1 (MQ=255) ttattG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTTTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGGTTTATCATCATCCGTACGCCCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAAAAATTCAGGTAATAAAACGAGTTGTTTCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAAAGCCAGGCGCTgg > 1:311640/1‑250 (MQ=255) ttattG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTTTCTT‑CAACCGCCATTAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAAATGCTTTAACAATTCCGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCCTTGAAAAACGGGGGAAAGAAAAGCACATGAGGAGAATTATCCAGCATATTTAACACCAGTCGCTgg > 2:80978/1‑250 (MQ=255) ttattG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTTTCTT‑CAACCGCCATGAGAAAATCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTATCATCCTCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAAATGCTTTTACAATTCAGGGAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAAAGGGGTAAAAAAAGGCACATGAGGAGAATTATTCAGCATATTTAACGCCAGTCGCTgg > 2:866734/1‑250 (MQ=255) tattG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATTAGAAAATCACTCTGCCCACAGCGCCAGTGCCCACGGTTTTTCATCATCCGTACGCCCGTTTACCGCCGGGGTGGGCAAAAAATGCTTTAACAATTCAGGGAATAAATCGAGGTGTTCCTGCGTTGCTGCCCCCAGTCCATTGAAAAAAGGGGGGAAAAAAAGCACATGAGGAGAAATATTCAGCATATTTAAAGCCAGTCGCTgg > 2:358517/1‑249 (MQ=255) tattG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGGAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGa > 1:894736/1‑250 (MQ=255) aa‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCg > 1:668209/1‑250 (MQ=255) aaccgggggg‑TTAA‑T‑TTTTTGTCTT‑CACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATcc < 1:611094/242‑1 (MQ=255) gCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAt > 1:113723/1‑250 (MQ=255) cGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAtg > 2:270270/1‑250 (MQ=255) ttGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAtgctg > 1:589489/1‑250 (MQ=255) ta‑a‑TTGTTTTTTTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAACACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAtgctg < 1:660715/248‑1 (MQ=255) | ACGGCATGTTTATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACC‑TATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTG‑TTTAAA‑C‑TGGCGG‑TTGA‑A‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAATGCTG > NZ_CP009273/2144919‑2145409 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |