| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,036,353 | 0 | C | T | 46.8% | 36.7 / 24.3 | 62 | F193F (TTC→TTT) | srkA | stress response kinase SrkA |
| Reads supporting (aligned to +/- strand): ref base C (21/12); new base T (29/0); total (50/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.88e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCCAGTTCGAAGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAG‑AATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTT > NZ_CP009273/4036109‑4036600 | gCCAGTTCGAAGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGGAGAGTTTACCgg > 2:485541/1‑249 (MQ=255)gCCAGTTCGAAGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGAATTTACCGt > 2:744927/1‑250 (MQ=255) ccAGTTCGAAGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGtt > 1:179014/1‑250 (MQ=255) aaGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGc > 1:50570/1‑249 (MQ=255) cTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTAACGTTCTGCGGCTACa > 1:566716/1‑250 (MQ=255) tGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTCTGCGGCTACAt > 1:52819/1‑250 (MQ=255) ataataTCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGGAGAGTTCACCCTTTTGTGGcgccacgg > 2:651005/1‑243 (MQ=255) aTCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGGAGATTTTACCGTTCTGCGGCGACATGGGGACTGCCa > 2:708292/1‑250 (MQ=255) gATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGcc > 1:341287/1‑250 (MQ=255) gAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCggg > 1:812400/1‑249 (MQ=255) cGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAatat > 1:368583/1‑250 (MQ=255) gTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTTTGCGGCTTCCTGGAGACTGCCCCGCCGGGAATATtc > 2:432483/1‑250 (MQ=255) cGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTCTCTGgc > 1:524276/1‑250 (MQ=255) tAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTCTCTTGCGCGGTgg > 1:122237/1‑250 (MQ=255) tGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGAGTTTACCGTTTTTCGGCTACATTGGGACTGCCACGCCCGGGATATTCTCTGGCGCGGTGGTCCCAtg‑tt > 2:450589/1‑250 (MQ=255) aCCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTTTCTGGGGCGGTGGTCCCAtg‑ttttt > 1:76038/1‑248 (MQ=255) aGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGGAGAATTTAACGTTCTGCGGGTACATGGAGAATGCCACGCCGGGGATATTTTCTGGGGCGGTGGGCCAAAG‑Tttgttgg > 1:307498/1‑249 (MQ=255) cGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCCCGCCGGGGATATTTTCTGGCGCGGTGGTCCAATG‑TTTGTTGATCt > 1:476547/1‑250 (MQ=255) gCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTTCGGCTACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGATGGTCCCATG‑TTTGTTGATCTGGATGATGCACg > 1:460068/1‑249 (MQ=255) cTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTa < 2:79289/250‑1 (MQ=255) tCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGGAGAATTTACCGTTCTTCGGCGCCACGGGGACCGCCCCCCCGGGGATATTTTCTGGGGCGGTGGGGCAAAG‑TTTGTTTGTCTGGGTGGTTCACGGAATgggg > 2:804452/1‑247 (MQ=255) tCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGAATTCACCGTTCTGCGGCCACATGGAGACTGCCACGCCGGGGATATTTTCTTGCGCGGTGGTCCAATG‑TTTGTTGATTTGGGTGATGCCCGCAATGGTc > 1:133286/1‑249 (MQ=255) actcGACCAGCGGTTTGAACGAATATCTCATGGAGCCGGGAAAGCTGTTGGAGGAGGCTACGCTGTTCCCTTCGGGGTTGAAGGCGGCATCCCTGAGAGCGAAGGTGGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGAAAGATTTCACGGTTCTGCGGATACAGGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGt < 2:566893/247‑1 (MQ=255) cccGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGAATTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGATGGGCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGtt > 1:872716/1‑250 (MQ=255) ccGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGGAGAATTCAACCGTCTGGGGGGTAAAGGGGAAAGCCCCGCCGGGGAAATTTTCTTGTGGGCTGGTCCAATGATTTGTTGAGTTGGCTGA‑GCAAGTAATTGttccgacggtt > 2:657845/1‑240 (MQ=255) gACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGGAGATTTCTTCGTTTCCCTGCTCCCCGGTGACCGCGCCGCCGGGGATATTCTCTCGCGCGATGGGCCCAAG‑GTTGTTGGTCTGGATGGTGGTCGTAATGGTCCAACCggccag > 2:789085/1‑245 (MQ=255) gACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGGTTTTACCGTTCTGCGGCTACATGGGGAATGCCCCGCCGGGGATATTTCCTGGCGCGGTGGGCCAAAG‑TTTTTTTATTTGGGTGAGGCCCGGAATGGTCCACCCCTT‑ccg > 2:352925/1‑248 (MQ=255) tCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGAttt < 2:812400/250‑1 (MQ=255) gTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGGAGATTTCACCGTTTTGCGGCTACATGGGGACTGCCACGCCGGGGATATTCTCTGGCGCGGTGGTCCAATG‑TTTGTTGGTCTGGATGATGCACGTAATGGTGCAGCCGTT‑CCGGGTTtgtg > 2:571401/1‑250 (MQ=255) tttGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCCCGCCGGGGATATTCTCTTGCGCGGTGGGCCAATG‑TTTGTTGATCTGGGTGATGCACGTAATGGTCCAGCCGGT‑CAGGGttttggg > 1:45199/1‑246 (MQ=255) gAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGc < 2:906399/250‑1 (MQ=255) tatCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGCTGAGCTGATTGCCGCCGTTACAGCACACTGGCGGGGAGGATTTCACGGTT‑TGCGGCGACCATGAGGGTCCCACGCCGGGGATATTTTTTGGCCGGCTGGGACAAAG‑TTTGGTGGTCTGGATGATGCACGTAATGGGGCAGGCGCT‑TCGGGTTTGTGGATGGTggtt > 2:694774/1‑246 (MQ=255) tcATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTTTGCGGCCTCATGGGGACTGCCCCGCCGGGGATATTCTCTTGCGCGGGGGGCCAATG‑TTTGTTGATCTGGGGGATGCACGGAATGGTCCCGCCGTTCCGGGGTTTGTGG‑TGTTGCTccaagg > 2:341889/1‑245 (MQ=255) ttGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGGAGATTTTACCGTTTTTCGGCCACCTTGAGACTGCCACGCCCGGGATATTCTCTGGCGCGGTGGTCCAATG‑TTTGTTGATCTTGGGGATGCCCGTAATGGTCCAGGCGGT‑CTGGATTTTTGGATGTTTGTTAATgggg > 2:906743/1‑247 (MQ=255) tttGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCgg < 1:187744/249‑1 (MQ=255) cGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGAATTCACCGTTCTGCGGGTACAATGAGACTGCCACGCCGGGGATATTCTCTGGCGCGATGGTTCCATG‑ATTGTTGATCTGGATGATGCACGTAATGGGCCAGCCGTT‑CAGGGTTTGTGGGTGTTGCTCAATGGGGATAAAGCCGAGCAGCGGATGCAACTg > 1:500892/1‑250 (MQ=255) gCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGGTTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTgg > 1:676296/1‑250 (MQ=255) tACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGATGGTCCCATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGGTGTTGCTCAATGGCGATAAAGCCGAGCCGCGGATGCAACTGGa > 1:576246/1‑249 (MQ=255) acacTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGGTCTTCgg > 2:593466/1‑102 (MQ=255) cacTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGc < 1:593466/102‑1 (MQ=255) aTACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACtatta < 2:630696/250‑1 (MQ=255) cTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTTCGGCTACATGGGGACTGCCCCGCCGGGGATATTTTCTGGCGCGGTGGTCCCATG‑TTTTTTGGTCTGGGTGATGCACGTAATGGTCCAGCCGGT‑CAGGGTTTGTGGGGGTTGCTCAATGGGGGTTAAGCCGGGCCGCGGGAGCCACTGGGAACTattattt > 2:420968/1‑248 (MQ=255) ttCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTCTGCGGCCACCTGGAGACCGCCACGCCGGGGATATTCTCTTGCGCGGTGGTCCCATG‑TTTGTTTGTCTGGGTGATGCACGTAATGGTCCAGCCGGT‑CAGGATTTGTGGGTGTTGCTCAAAGGCGGTAAAACCGAGCAGCGGGTGGAACTGGAAACTattattta > 2:430808/1‑247 (MQ=255) ggTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTTTTCGGCTACATGGAGAATGCCACGCCGGGAATATTTTCTTGCGCGATGGTCCAATG‑TTTGTTGGGCTGGGTGATGCACGTAATGGGCCAGCCCTT‑CAGGGTTTTTGGGTGTTTGTCAATGGCGATAAAACCGAGGAGCGGGGGCAACCGGGAACTATTATTTaaagttt > 2:678776/1‑245 (MQ=255) aGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGGTCTGCGGCGACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGGTGGGCCCATG‑TTTGTTGGTCTGGGTGATGCACGTAATGGTCCAGCCGGT‑CAGGATTTGTGGGTGTTGCTCAATGGGGATAAAACCGAGAAGCGGATGGAACTGGAAACTATTATTTAAGATTTTaaag‑a > 2:645870/1‑249 (MQ=255) gCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAG‑AATTTa < 1:352925/250‑1 (MQ=255) aTTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGAATTTACCGGTTTGCGGCTACATGGAGACTGCCCCGCCGGGGAAATTCTCTTGCGCGGTGGGCCAATT‑TTTGTTGTTCTTGATGATGGACGGAAAGGTTCAGCCGTT‑TAGGGTTTTTGGATGTTGGTTCATTGCGATAAAGCCGAGCAGCGGAAGCAACTGGGCAATATTATTTTAGCTTTTGAAG‑AATTTTGc > 2:706756/1‑250 (MQ=255) ttCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTCCCGTTCTGCGGCCACATGGAGAATGCCCCGCCGGGGATATTTTCTTGCGCGGTGGTCCCATG‑TTTGTTGATCTGGATGATGCACGTAATTGGCCAGCCGTT‑CCTGGGTTGTGGGTGTTGTTCCATTGGGAGAAAGACGAGCCGCGGGTGCAACCGGAAAATATTATTTGAGGTTTTGAAGAAATTTAgg > 2:590062/1‑249 (MQ=255) tCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGGTTTGCGGCCACATGGGGACCGCCACGCCGGGGATATTCTCTTGCGCGGTGGGCCAATG‑TTTTTTGATCTGGGGGATGCACGTAATGGGCCAGCCGTT‑CAGGGTTTTTGGGTGGTGCGCAATTGGGATAAAAGCGGGCCGCGGGTGGAAATGGGAAATATTATTTGAGATTATGGAA‑AATTTatggt > 2:429786/1‑246 (MQ=255) tGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGGTGCAAATGGAAACTATTATTTAAGCTTATGAAG‑AATTTAGCGAGtt > 1:252030/1‑250 (MQ=255) gACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCGCCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAG‑AATTTAGCGAGTTCGACAcc < 1:694774/250‑1 (MQ=255) aCAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGGAGATTTCACCGTTCTGCGGCCACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGGTGGGCCCATG‑TTTTTTGGTCTGGGTGATGGACGTAATGGTGCAGCCGGT‑CAGGGTTTTTGGATGTTTGTCAATGGGGGTAAAGCCCAGGAGCGGGTTGCACTGGAAACTAATATTTAAGCTTATTAAG‑AATTTTGCGGGGTCGGCCCCg > 2:720834/1‑250 (MQ=255) aGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGGAGAATTCAACGGTCTTCGGCCACATGGGGACCGCCACGCCGGGGATATTTTCTGGCGCGATGGGCCCATG‑TTTGTTGATCTGGGGGATGCACGTAATGGGCCAGCCCCT‑CAGGGTTTGTGGATGTTGCTCAATGGTGATAAAACCGCGGAGCGGGGGCAAATGGAAACTCTTTTTGAAGCCTATGAAA‑AATTTAGCGAGTCTGACAccccg > 2:641672/1‑247 (MQ=255) aGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGGTACATGGAGACTGCCACCCCGGGGATATTTTCTTGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGGTGTTTCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTTTGAAG‑AATTTATCGAGTTCGACACCCCt > 1:882496/1‑250 (MQ=255) gATTGCCGCCGTTACAGCACACTGGC‑GGGGAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTTTCTGGCGCGGTGGTCCAATG‑GTTGTTGGTCTGGGTGGTGGACGTAATGGTCCCGCCGTT‑CAGGGTTTGTGGGTGTTGGTCAATGGCGGTAAAACCGGGCAGCGGAGGCAACTGGGAAATATTTTTTAAGCTTATGAAG‑AATTTAGCGAGTTCGAGACCGCTGGAATAGGa > 2:273563/1‑250 (MQ=255) gATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTTACCGTTCTTCGGCTACATGGAGACTGCCCCGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGGCCCGCCGTT‑CAGGGTTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAAATATTATTGAAGCTTATGAAG‑AATTTAGCGAGTTCGACACCGCTGGAATCGGa > 1:813440/1‑250 (MQ=255) aTTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAG‑AATTTAGCGAGTTCGACACCGCTGAAATCgg < 2:368583/248‑1 (MQ=255) cgccgTTACAGCACACTGGC‑GGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTCTCTGGCGCGGTGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGGTTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAG‑AATTTAGCGAGTTCGACACCGCTGAAAACGGACTGAtt > 1:178912/1‑250 (MQ=255) ttACAGCACACTGGC‑GGGAAGATTTTACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGGATATTTTCTGGCGCGGTGGTTCAATG‑TTTGTTGATCTGGGTGGTGCACGTAATGGTCCAGCCGGT‑CAGGATTTGTGGGTGTTGGTCAATGGGGGTAAAACCGGGGAGCGGAGGCAAATGGGAAATATTTTTTAAGCTTATTAAG‑AAATTAGCGAGGTCGGAAACGCTGAAATCGGACTGGTTGAAcc > 2:399427/1‑250 (MQ=255) gC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAG‑AATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATg < 2:179014/250‑1 (MQ=255) gC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAG‑AATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATg > 1:375453/1‑250 (MQ=255) tCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAG‑AATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGttt < 2:50570/249‑1 (MQ=255) | GCCAGTTCGAAGCTGATAATATCGATCAGATGGAAGCGGTTGGGCGTTATTTAGGGCGTATGCACCAGACGGGGCGCAAACAGCTTTTTATCCATCGCCCGACCATCGGTTTGAACGAATATCTCATTGAGCCACGCAAGCTGTTTGAGGACGCTACACTGATACCTTCCGGGTTGAAAGCGGCATTCCTGAAAGCGACAGATGAGCTGATTGCCGCCGTTACAGCACACTGGC‑GGGAAGATTTCACCGTTCTGCGGCTACATGGAGACTGCCACGCCGGGAATATTCTCTGGCGCGATGGTCCAATG‑TTTGTTGATCTGGATGATGCACGTAATGGTCCAGCCGTT‑CAGGATTTGTGGATGTTGCTCAATGGCGATAAAGCCGAGCAGCGGATGCAACTGGAAACTATTATTGAAGCTTATGAAG‑AATTTAGCGAGTTCGACACCGCTGAAATCGGACTGATTGAACCTTTACGCGCCATGCGTTTGGTTT > NZ_CP009273/4036109‑4036600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |