| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,570,451 | 0 | C | T | 39.2% | 125.3 / 31.5 | 79 | E277K (GAA→AAA) | hsdS | type I restriction‑modification system specificity subunit |
| Reads supporting (aligned to +/- strand): ref base C (9/39); new base T (31/0); total (40/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.82e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGTT > NZ_CP009273/4570213‑4570699 | ccAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTTACttttttta > 1:358042/1‑244 (MQ=255)ccAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAAc < 1:233956/250‑1 (MQ=255) cAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACa < 2:101473/250‑1 (MQ=255) aGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACAt > 1:73967/1‑250 (MQ=255) aGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTTATTTTTTGAACAttt > 2:867260/1‑248 (MQ=255) ttgttTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTTTCTTTTTGAACAttt > 1:885468/1‑246 (MQ=255) cGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTATTTTTCTTTTTTTACATTTTTTAAAACGaa > 2:362305/1‑249 (MQ=255) cAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAatat < 2:85278/250‑1 (MQ=255) aGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATc < 1:402078/250‑1 (MQ=255) catcatTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGtt < 2:562265/249‑1 (MQ=255) atcatTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGtttt < 2:679174/250‑1 (MQ=255) atcatTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGtttt < 1:322539/250‑1 (MQ=255) tcatTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTTAATTTTTGTACATTTTTGAAACCGAATATTGTTTTg > 1:225145/1‑250 (MQ=255) tcatTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTg < 1:113986/250‑1 (MQ=255) atTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTTTGTAAATTCTTGAAAACGAATATCGTTTTTAt > 1:53756/1‑250 (MQ=255) atTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGAt < 1:592214/250‑1 (MQ=255) tGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTTTTAACATTTTTGAAAAAGAATATCGtttttttct > 1:799445/1‑245 (MQ=255) aTTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑a < 2:591301/250‑1 (MQ=255) tttCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTTTTAACATTTTAGAAAACGAATATCGTTTTTATTTAC‑At > 1:641998/1‑250 (MQ=255) tGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCa < 2:284961/250‑1 (MQ=255) cTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTATAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGc < 1:606864/250‑1 (MQ=255) aGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACg < 1:153967/250‑1 (MQ=255) gggATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTAc < 1:517919/250‑1 (MQ=255) ggATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTTTTAACATTCTATAAACCCAATATCGTTTTTTTTTTC‑ATTGCCAACACGTAc > 1:278328/1‑249 (MQ=255) aaaaaaTATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTTACTTTTTTAACATTTTTAAAAACGAATATCGTTTTTTTCTTC‑ATGGCCCGCACGTACAAAACt > 1:802306/1‑249 (MQ=255) aaaTATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTTTTAACATTCTTGAAAACGCAAATCGTTTTTTTTTAA‑ATTGCCCGCCCGTACAAAAATaaa > 2:558680/1‑248 (MQ=255) tatatTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTTACTTTTTTTACATTTTTTAAAACCCATATCGTTTTTTTTTAC‑CTTGCCCGACCGTACCGAAATAATACgtaagatttg > 2:140031/1‑243 (MQ=255) atTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTTTTTTTTTTAAAATTTTTGAAACACAATATCGTTTTTTTTTTC‑CTTGGCCGCACGTAAAAAAATAAATCGTAGTAtttggt > 2:881555/1‑245 (MQ=255) atTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTCACTTTTTTAACACTCTATAAAACCAATATAGTTTTTATTTAC‑CTTGCCCGCCCCTACAGAAACAAAGCGTAGtttttggt > 2:703938/1‑245 (MQ=255) tCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTTACTTTTTGTACATTTTTGAAACAGAATATTGTTTTTATTTACAATGGTCA‑CACCATCAGAAATAATGCGGAGGATTgggagac > 1:178214/1‑245 (MQ=255) cTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTTACTTTTTTAAAATTTTATAAAACGAAAATCGTTTTTTTTTAC‑ATTGCCACCACGTACAGAAAAAAAGCGTAGTATTTTATGag > 2:251426/1‑248 (MQ=255) gTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCatc < 2:862938/250‑3 (MQ=255) aaGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAacac < 1:787784/249‑1 (MQ=255) aTCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTTACTTTTTTTATAATTTATAAAAAGAATATCGTTTTTATTTAC‑ATTGCCAGCACGTACAGAAATAATACGTAGTATTTGATGACCAAcacca‑cct > 2:427231/1‑248 (MQ=255) aTCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTTTTAACAATTTAGAAAACGAATATCGTTTTTATCTAC‑ATTGCCAGCACGTAAAAAAATAATTCGTAGGATTTGATGACAAACACCA‑C‑tt > 1:731697/1‑250 (MQ=255) aTCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTTACTTTTTTTACATTTTATAAAAAGAATATCGGTTTTTTTTTC‑ATGGCCACGACGCAAAGAAATAAAGAGGAGTATTTGAGTAACAAAACCC‑C‑tt > 2:164371/1‑250 (MQ=255) cTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTTACTTTCTTTAAATTTTAGAAAACGAATATCTTTTTTATTTAC‑ATGGGCAGCACCTACAAAAAAAATGCGTAGTATTGGATGACCAACACCA‑C‑tttt > 1:546065/1‑249 (MQ=255) tGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTc < 1:29639/247‑1 (MQ=255) gTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTCACTTTTTTAAAATTCTAGAAACCGAATATAGTTTTGATCTAC‑ATTGCCAGCCCGTATAGAAATAATAGGTAGTATTTGATGACTAACACCACC‑TTTCtttt > 1:436506/1‑250 (MQ=255) gTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCAttt < 2:421642/249‑1 (MQ=255) gAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTtga < 1:600811/250‑1 (MQ=255) aTAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTTACTTTTTTAACATTTTAGAAAACGAAAATCGTTTTTTTCTAC‑ATTGCCAGCACGTACAAAACTAAAACGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGGTTTTTTGAAAGAc > 1:559816/1‑250 (MQ=255) tAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCTCAAACACCAACAAATTCTAAGCTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCGTATAATTTGTGGCGG‑TTGAGTTCTCTTTCGGAACATTCTAGAAACCGAATGTCGTGTTGGGCTGG‑ATGGCCTGCGCGTACAGAGGTAATGTGTAGTATTGGATGACTAACAGCA‑C‑TTGCATTTGGCGTGGATGAAAGAcc < 2:220109/250‑1 (MQ=255) tAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTATTTAATTTTTTTAAATTTTTTAAAACAAAAATAGTTTTTTTTTAC‑ATTGGCCGCCCGTAAAGAAAAAAATTGTAGTATTTTATTAAAAAAACCC‑CATTTCATTTGTCTTTGATGaaaaa > 2:864960/1‑247 (MQ=255) aGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTaa < 1:846591/249‑1 (MQ=255) ggATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAAtt < 2:658578/250‑1 (MQ=255) gATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTc < 2:27406/250‑1 (MQ=255) gATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTc < 1:36585/250‑1 (MQ=255) aGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTAATTTTTGAACAATCTTGAAAACCAAAATCGTTTTTTTTTAC‑ATTGCCCGCCAGTAAAGAACAAAATCGTAGTATTGGGTGACCAAAACCC‑C‑TTTTATTTGGCTTTTATGAAAAAACATTACGTAAtttaatt > 1:699793/1‑244 (MQ=255) gCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTaa < 2:217967/250‑1 (MQ=255) ttGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCTCATTTTGAACATTTTAGAAAAAGAAAATAGTTTTGTTCTAA‑ATTGGGAACACGTACAGAAATAATACGTGGTATTTGATTATCAAAACAC‑C‑ATTCATTTTGCTTTGATGAAAGAGAACTAAGTAAATCAGATAagatagaa > 2:53860/1‑249 (MQ=255) ttttCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGGTTAACTTCTGTACACTTTATAAAACCAATAACGGTTTTTTTTAC‑AATGCCACCACATACAGAACTAATTGGTAGTGTTGGGCGATCAACAACA‑A‑CTTCATTTGGTGTTGTTGAAAAAACAGTCCGTAACTTAGTTTAGATAGGTTCATAATTTAAatt > 1:203283/1‑250 (MQ=255) cAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTACATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTTTTCTATTTCTCAACATTCTTGAAAAAGAATATCAATTTTATTTAC‑ATGGCGATCACATACACAAAAAATATGTATTATTGGATAACAAAAACAA‑C‑TTTCATTTTGCTTTTCTGAAAAACCATTTTCTAAATCAGTCATAATAGAATGAAAAATTTAattctt > 2:328764/1‑249 (MQ=255) cAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTTTTTAAATTCTTTAAAACGAATATCGTTTTTTTTTTC‑ATTACCCTCACGTACAGAAATAATACGTAGTATTTGATGACCAACACCA‑C‑CTTCATTTTGCTTTTATGAAAAACCATTACGAAATTCAGTTAAGATAAATTCTAAATTTAACTTCTTa > 2:810111/1‑250 (MQ=255) tAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑GTTAGTTTACTTTTTTAACATTCTAGAAAACAAATAACGTTTTTATTTAC‑ATTGCCAACACCAAACGAAATAAATAGTAGTATTGTATGAACAAAACCA‑C‑ATTTATTTTGCTTTTATGAAAAAACACTAAGTAATTCTATTAAGATAAATTTAAAATTTTACTTCTTata > 2:11790/1‑247 (MQ=255) acaAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑ATTCATTCATTTTTTTAAAATGTTAGAAACCCAAACATTTTTTTTTTTAC‑ATGACCAGCACATACACAACTAAAGCATTGAATTGGATGAACAAAAACA‑C‑TTTTATTTTGTTTTCATGATAAACCAATAAGGTATTATGTTAAACATGATTTAAAAATTTAATTCTTTAATACaaa > 2:133691/1‑247 (MQ=255) acacCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTTTTTTATTTTTTTACAATTTTAAAAACTCAA‑ATCGTTTTTTTTTTC‑ATAGTCCACCCCTACACAACCAAATCGGCGTATTTGGTGTCCCACCCCA‑C‑CTTTCTTTTGCTTTTTTGTAAAACCATTACGTAACTTAGTTTTTATTGATTCTAAATTTAACTTTTTTAATAAAGAATAtt > 2:39455/1‑250 (MQ=255) acacCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGtt < 2:841498/250‑1 (MQ=255) aaaCTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTCTTAAAATTTTAGAAACCGAATATCGTTTTGATTTAC‑ATGGCCAGCACGGACAGAACTAATGCGTAGTATTTGATGACCAACACCA‑C‑CTTCATTTTGCTTTGATGAAAGACCATTACGTAATTCCGTTAAGATAGATTCAAAATTTAACTTCTTTAATAAAGAATGTTGAGGTTCAAAATTa > 1:201484/1‑249 (MQ=255) aaCTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACg < 2:874624/250‑1 (MQ=255) tCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAATTTACTTTCTTAACATTCTAGAAAACGAAAATCGTTTTTATTTAC‑ATGGCCAGCACGTACAGAAATAAAGCGTAGTATTGGGTGAGCAACACCA‑C‑CTTCATTTTGCTTTTTTGAAAAAACATTACGTAATTTAGTTAAGATAGATTCAAAATTTAAATTCTTAAATAAAGAATGTTGCGGCTCCAAAATAAGCCAt > 1:496304/1‑250 (MQ=255) cGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTTTTAACATTCTAGAAAACGAATATCGTTTTTATCTAC‑ATGGCCAGCACGTACAAAAATAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTTATTTTGCTTTTATGAAAAACCATTACGTAATTTAGTTAAGATAGATTCAAAAATTAACTTCTTAAATACAGAAAGTTGCGGCGCAAAAATAAGCCCttt > 1:427561/1‑250 (MQ=255) tataGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAAcacca‑c < 1:455257/144‑1 (MQ=255) taGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTACTTTTTTAACATTCTTGAAAACGAATATCGTTTTTTTTTTC‑ATGGGCAGCACGTACAGAACTAAAGGGTAGTATTGGGTGACAAAAAACA‑C‑ATTTATTTTGGTTTTATGAAAGAACATTACGTAATTTAGTTAAGATAGATTTAAAAATTAAATTTTTAAATAAAGAATGTTGTGGGTCAAAAATACACCAtttttttt > 1:626063/1‑247 (MQ=255) taGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCt < 2:907580/249‑1 (MQ=255) taGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTg < 2:364281/250‑1 (MQ=255) gCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTTAATTTCTTAAAATTCTAGAAACCGAAAATCGTTTTTATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTTGATGACCCACACCA‑C‑CTTTATTTTGCTTTTATGAAAGACCATTACGTAATTCAGTTTAGATAGATTCAAAATTTTAATTCTTTAATACAGAATGTTGCGGCTCCAAATTACGCCAttttttttt > 1:11105/1‑245 (MQ=255) gCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGt < 1:750847/249‑1 (MQ=255) gCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGt < 2:558088/249‑1 (MQ=255) ataaaAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTcc < 2:455390/250‑1 (MQ=255) aaaGATCTCCATCTTGTAATTTGTGGCGG‑TTTTGTTCTCTTTTTTTACATTTTTTAAACCGAATATCGTTTTTTTTTTC‑ATTTCCAGCACGTTCAGAACTAATGCGTAGTTTTTGTTGACCAACACCA‑C‑TTTCCTTTTTCTTTTGTTAAAAAACATTAAGTAATTTAGTTTAGATAGATTCAAAAATTTAATTCTTTAATACAGAATGTTGCGGCTCAAAATTTAGCCATTTTTTTTTTAAtttttcttt > 2:72317/1‑245 (MQ=255) aaaGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCAtt < 1:475945/250‑1 (MQ=255) cATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACt < 2:789679/245‑1 (MQ=255) cATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTg < 1:216820/246‑1 (MQ=255) gTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTGTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCAGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGccccc < 1:356054/247‑1 (MQ=255) tttGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATAcc < 1:844857/250‑1 (MQ=255) aGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAAc > 2:910447/1‑250 (MQ=255) ttCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGt < 2:799445/250‑1 (MQ=255) tCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAAt > 1:855965/1‑151 (MQ=255) cACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAAtt < 2:855965/151‑1 (MQ=255) cACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGtt < 1:164371/249‑1 (MQ=255) | CCAGAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGG‑TTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTAC‑ATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCA‑C‑TTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGTT > NZ_CP009273/4570213‑4570699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |