| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 684,970 | 0 | A | C | 44.4% | 76.8 / 10.5 | 45 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (25/0); new base C (0/20); total (25/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.15e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCA‑GCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGG > NZ_CP009273/684723‑685218 | aTCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCA‑GCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCAcc > 1:718687/1‑250 (MQ=255) cGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCA‑GCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTg > 1:131686/1‑250 (MQ=255) aTCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCA‑GCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAAt > 1:780396/1‑250 (MQ=255) aggggtcccaaaaTATGGGATGTATCCGGGCAAAATAAAAAGGAATTATTTCCGGCGCTGCCGCAGCCTCAACAACACAGCAAAAAACCCAAAAAAGGCCGTCA‑GCCCCCACGGGGGCCGGTGGCCGTTGCGGGGGTAGGGTGG‑GAGTCGGGTGGTCGGCGCCCCGTTAGGGGTAAACCCCTCGCGGGTAAACTGGGGGATCATCGCCTGAATCTCCCCCTGCGGGCCAATCACCGCCGTAATGCCgttg < 2:324943/240‑1 (MQ=255) gaaaaTAGGGGATGTATCCCGGCAGAAAAAGAAGGGATTATTTACGGCGATGACGCAGACCAACCAACACAGCAGAAAACCCAAAAAAGGCCGTCA‑CCCCCCACGGCGGCCAGTGGCGGGTAGGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGCCACGTTAGTGTTTAACCCCTCGCGGGTGAACTGGGGGATCATCGCTTGAATCTCCCCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGtgct < 2:598626/248‑1 (MQ=255) gAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCA‑GCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGtgctg > 1:426435/1‑250 (MQ=255) gtatttATCCCGGCACGAAAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCA‑GCCCCCACAGCGGCCAGTGGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGTTTAACCCCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCCCCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACa < 1:517584/244‑1 (MQ=255) tatacgggCACAATAAGAAGGTATTATTTACGTCGCTGACGCAGCCTCATCAAAACGGAAGAAAAACCAAACAATGCCGCCA‑GCACCCACGGCGGCCAGTTGCCGGTACGTGCGTGTGGTGT‑GAGTCCGGTGGTGGGCGTCCCGTTAGTGGTTAACCCCTCGGGGGTGAACTGCGGGATCATCGCCTGAATCTCCCCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTggg < 2:58137/243‑1 (MQ=255) tATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCA‑GCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGgc > 1:819759/1‑250 (MQ=255) ccGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCA‑GCCCCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGTTTAACCCCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCCCCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGgcgcg < 1:545106/249‑1 (MQ=255) cACGATAAGAGGGATTTTTTTACGCCGCTGACGCGAACACACCACCAC‑GCAACAAAAACAAAACATGGCGGCAGGCCCCCACGGCGGCCAGTGCCGGGTCCGTGCGTTGGGTGT‑GGGCCCGGTGGTCGGCGTCACGTTAGTGTTTAACCCCTCGGGGGTGACCTGCGGGTTCACCGCCTGAATCCCCCCCTGCGGGCCAACCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGc < 2:359245/250‑1 (MQ=255) agtaTAAGAAGGGATTATTTACGCCGCTGACGAAGACTCATAAACACAGCAGAAAAACAAAACAAGGCCGCCA‑GCCCCCGCAGCGCCGGTTTGCGGGTGCGGGGGTAGGGTGT‑GAGTCCGGGGGGCGGCGTCACGTTAGTGGTTAACCCCTCGGGGGTGAACTGGGGGATCACCCCCTAAACCCCCCCCGGCGGGCCAACCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCt < 2:452602/247‑1 (MQ=255) gTCGCGGCCCCAGACCCATAAACACAGCAAAAAACCAAAACAAGGCCGTCA‑GCCCCCACAGGGGCCAGTGGCCGGTGCGGGCGTAGGGTGT‑GAGTCGGGTGGTCGGCTTCACGTTAGTGGTTAACCCCTCGGGGGTGAACGGCGGGATCATCGCCTGAACCTCCCCCGGCGGCCCAACCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCAt < 2:84583/250‑1 (MQ=255) gCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCA‑GCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAgtg > 1:470189/1‑250 (MQ=255) acacAGCAGCAAAACCAAACAATGCCGTCA‑GCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGAc > 1:726926/1‑249 (MQ=255) cagaaAACCAAAACAAGGCCGTCA‑GCCCCCACCGCGGCCGGTTGCCGGTAGGGGCGTAGGGTGT‑GAGCCCGGTGGGCGGCGCCACGTTAGTGGTTAACCCCTCGCGGGGAAACTGGGGGATCACCGCCTAAACCTCCCCCGGCGGCCCAATCCCCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGa < 2:308849/250‑1 (MQ=255) caaaaacCCAAAGAAGGCCGTCG‑CCCCCCACAGCGGCCTGTGGCGGGTCCGGGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACCCCTCGCGGGTAAACTGCGGGATCATCGCCGAAATCTCCCCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGAt < 2:808974/247‑1 (MQ=255) cccaaccaaTCCCGTCA‑CCACCCACAGCGGCCGGTTGCGGGTACGTGTGTTGGGTGT‑GATGCGGGTGGTCGGCGTCACGTTAGTGTTTAACCCCTCGGGGGTGACCTGCGGGATCATCGCCTGAATCCCCCCCGGCGGCCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCa < 2:366582/249‑1 (MQ=255) aaaaaCAACGCCGTCA‑CCCCCCCGAGCGGCCAGTTCCGGGGACGGGCGTATGGTGT‑GAGTCGGGTGGTGGCGGCCAGGTTGTTGTTTACCCCCGCGGGGTGGAACGGGGGAATCTCCGCTTGATCCTCCCCCTGGGGGCCAACCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCaa < 2:179667/248‑1 (MQ=255) gCACCCACAGCGGCGAGTGGGCGGTAGGTGGGTGTGGGGT‑GGGTCCGGTGGTGGGCGTCACGTTAGTGGTTAACCCCTCGGGGGTGACCGGCGGGATCATCGCCTGAATCTCCCCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGga < 2:388599/250‑1 (MQ=255) cacaGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGTTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCCCCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAg < 1:343174/250‑1 (MQ=255) aGCGGCCTTTTGCGGGTGCGTGCGTAGGGTTG‑GGTTCCGGTGGCCGGGTCCCCGTTATTGGTTACCCCCTCGCGGGTGACCTGGGGGTTCACCCCCTGATCCCCCCCCTGCGGCCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTca < 2:780396/250‑1 (MQ=255) aGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGt > 1:135839/1‑248 (MQ=255) gCGGCCGGTTGCCGGGAGGGGCGGAGGGTGG‑GAGGCGGGTGGTGGGCGTCACGTTAGTGTTAAACCCCGCGGGGGTAAACGGCGGGATCACCGCCTGAACCCCCCCCTGGGGGCCAACCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTcag < 2:108478/250‑1 (MQ=255) ttGCCGGTACGTGCGTATGGTGTAGATCTCGGTGGCGGCCGTATCATTA‑AGAATAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGt > 2:114779/1‑250 (MQ=255) gt‑gAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTAt > 2:238788/1‑250 (MQ=255) gt‑gAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTAt > 2:519387/1‑250 (MQ=255) aGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATcgc > 1:273127/1‑250 (MQ=255) gagTCACTTTAGTGGTAAACACCGCGGGGGTGAACGGGGGGATCGTCGCCTGAACCTCCCCCGGGGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGcc < 2:365079/248‑1 (MQ=255) tCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGcc > 2:69890/1‑247 (MQ=255) aCGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGaa > 2:908642/1‑250 (MQ=255) ttAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGa > 1:297482/1‑250 (MQ=255) ttAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCg > 2:470379/1‑248 (MQ=255) ccTCGGGGGTGAACGGGGGGATCATCGCCTGAATCTCCCCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAAt < 1:77888/250‑1 (MQ=255) cTCGCGGGTAAACTGGGGGAGCATCGCTTAATCCTCCCCCGGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATa < 2:261865/250‑1 (MQ=255) gggTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCg > 2:214509/1‑249 (MQ=255) gTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAg > 1:575126/1‑250 (MQ=255) gggaatcaccGCCGAAATCACCCCCGGGGGGCAAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTTGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCa < 1:671571/246‑1 (MQ=255) tcGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCAtt > 1:660223/1‑250 (MQ=255) tcGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCAtt > 2:337185/1‑250 (MQ=255) gCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTg > 1:860432/1‑250 (MQ=255) aTCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGa > 1:258941/1‑248 (MQ=255) tctcACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAg > 1:558398/1‑250 (MQ=255) tctcACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAg > 1:376712/1‑250 (MQ=255) cACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAAAACCATTTGCCGACAgcgg > 1:426323/1‑250 (MQ=255) | ATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCA‑GCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGT‑GAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGG > NZ_CP009273/684723‑685218 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |