mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 56,043 | G→C | T356R (ACG→AGG) | lptD ← | LPS assembly protein LptD |
| RA | 103,231 | G→A | C63Y (TGT→TAT) | lpxC → | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 914,598 | +T | intergenic (‑58/‑93) | ybjX ← / → macA | VirK/YbjX family protein/macrolide transporter subunit MacA |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 4,322,729 | C→T | E124K (GAA→AAA) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 50 (0.520) | 67 (0.700) | 56/494 | 1.7 | 55.8% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 56 (0.580) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 1391495 | NA (NA) | 106 (1.110) | 87/494 | 0.2 | 99.1% | intergenic (+146/‑127) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | = 1796931 | 1 (0.010) | intergenic (‑104/‑420) | thrS/espL1 | threonine‑‑tRNA ligase/type III secretion system effector EspL1 | |||||
| * | ? | NZ_CP009273 | 1796928 = | 1 (0.010) | 88 (0.920) | 81/494 | 0.3 | 98.9% | intergenic (‑101/‑423) | thrS/espL1 | threonine‑‑tRNA ligase/type III secretion system effector EspL1 |
| ? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
| * | ? | NZ_CP009273 | = 2283592 | NA (NA) | 112 (1.170) | 86/494 | 0.2 | 51.1% | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | = 3255846 | 107 (1.120) | coding (1174/1209 nt) | tdcD | propionate kinase | |||||