breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 56,043 G→C T356R (ACG→AGG)  lptD ← LPS assembly protein LptD
RA 103,231 G→A C63Y (TGT→TAT)  lpxC → UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase
RA 874,860 G→A M221I (ATG→ATA yliI → aldose sugar dehydrogenase YliI
RA 914,598 +T intergenic (‑58/‑93) ybjX ← / → macA VirK/YbjX family protein/macrolide transporter subunit MacA
RA 1,431,900 G→A Q1048* (CAG→TAG)  nifJ ← pyruvate:ferredoxin (flavodoxin) oxidoreductase
RA 4,322,729 C→T E124K (GAA→AAA)  pmrB ← two‑component system sensor histidine kinase PmrB

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =50 (0.520)67 (0.700) 56/494 1.7 55.8% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 56 (0.580)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 = 1391495NA (NA)106 (1.110) 87/494 0.2 99.1% intergenic (+146/‑127) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 = 1796931 1 (0.010)intergenic (‑104/‑420) thrS/espL1 threonine‑‑tRNA ligase/type III secretion system effector EspL1
* ? NZ_CP009273 1796928 =1 (0.010)88 (0.920) 81/494 0.3 98.9% intergenic (‑101/‑423) thrS/espL1 threonine‑‑tRNA ligase/type III secretion system effector EspL1
?NZ_CP009273 = 2096424 NA (NA)intergenic (‑68/+3) BW25113_RS10605/wbbL IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL
* ? NZ_CP009273 = 2283592NA (NA)112 (1.170) 86/494 0.2 51.1% intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
?NZ_CP009273 = 3255846 107 (1.120)coding (1174/1209 nt) tdcD propionate kinase