Predicted mutation
evidence seq id position mutation annotation gene description
RA CP043523 1,848,290 +AT intergenic (+275/‑2) FTN78_chr1897 → / → FTN78_chr1898 Cold shock protein of CSP family/Cold shock protein of CSP family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0435231,848,2861.A97.6% 360.2 / 11.8 210intergenic (+271/‑6)FTN78_chr1897/FTN78_chr1898Cold shock protein of CSP family/Cold shock protein of CSP family
Reads supporting (aligned to +/- strand):  ref base . (2/3);  new base A (135/70);  total (137/73)
Fisher's exact test for biased strand distribution p-value = 3.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01
*CP0435231,848,2862.T97.6% 360.4 / 12.1 210intergenic (+271/‑6)FTN78_chr1897/FTN78_chr1898Cold shock protein of CSP family/Cold shock protein of CSP family
Reads supporting (aligned to +/- strand):  ref base . (2/3);  new base T (135/70);  total (137/73)
Fisher's exact test for biased strand distribution p-value = 3.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 254 total aligned reads displayed.

CATTACGATATGGATTTTATTAAT‑G‑GAGAGTAGTTTGACATTGACTATAATTAGTGTTATTATGAAGAAGTAAATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATGAGATTTACAATTTTGTCGAAAGGAAATAA‑‑ATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAACACTTGATGAAGGTCAAAA  >  CP043523/1848138‑1848428
                                                                                                                                                       ||                                                                                                                                                
cactACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa                                                                                                                                                    <  2:211874/147‑1 (MQ=17)
cactACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa                                                                                                                                                    >  1:4204769/4‑150 (MQ=17)
cactACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa                                                                                                                                                    >  2:3237688/4‑150 (MQ=17)
 actACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa‑‑a                                                                                                                                                 <  2:136725/148‑1 (MQ=17)
 actACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa‑‑a                                                                                                                                                 <  2:230896/148‑1 (MQ=17)
   tACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAaataa‑‑ata                                                                                                                                               >  1:4174867/1‑150 (MQ=17)
     cGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atata                                                                                                                                             >  2:817582/1‑149 (MQ=17)
     cGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atata                                                                                                                                             <  2:1692978/150‑2 (MQ=17)
      gATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatat                                                                                                                                            >  1:1558543/1‑148 (MQ=14)
      gATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatat                                                                                                                                            <  2:2838961/150‑3 (MQ=14)
      gATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatat                                                                                                                                            <  2:2839287/150‑3 (MQ=14)
      gATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatat                                                                                                                                            >  1:3007984/1‑148 (MQ=17)
       atatGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCAGTTTTCGCAAAATAAGATTTACAATTTTGTTGAAAGGAAATAA‑‑atatatt                                                                                                                                           <  2:4111378/150‑4 (MQ=17)
       atatGGATTTTATTAAT‑CAGAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATATTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatatt                                                                                                                                           <  2:4158242/150‑4 (MQ=17)
         atGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatattat                                                                                                                                         >  1:528366/1‑145 (MQ=14)
          tGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatattatg                                                                                                                                        <  2:3845136/150‑7 (MQ=14)
          tGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatattatg                                                                                                                                        <  2:1024838/150‑7 (MQ=14)
           ggATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatattatgg                                                                                                                                       <  2:344865/150‑8 (MQ=14)
                     taatcagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGaa                                                                                                                              <  2:1931732/144‑1 (MQ=14)
                      aatcagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAAc                                                                                                                             >  1:884981/6‑150 (MQ=14)
                       atcagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACa                                                                                                                            >  2:1710208/5‑150 (MQ=14)
                       atcagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACa                                                                                                                            <  2:1334393/146‑1 (MQ=14)
                         cagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGt                                                                                                                          <  2:2639183/148‑1 (MQ=14)
                             gagTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTaaaa                                                                                                                      >  1:2819248/1‑150 (MQ=14)
                             gagTAGTTTGACATGGAGTATAATTAGTTTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTaaaa                                                                                                                      <  2:291218/150‑1 (MQ=11)
                               gtagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATg                                                                                                                    >  2:4602485/1‑150 (MQ=11)
                                tagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATgg                                                                                                                   <  2:2059723/150‑1 (MQ=11)
                                tagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATgg                                                                                                                   >  1:944246/1‑150 (MQ=11)
                                tagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATgg                                                                                                                   <  2:2768643/150‑1 (MQ=11)
                                tagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATgg                                                                                                                   >  2:4234692/1‑150 (MQ=11)
                                    ttGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAGATGGTTTa                                                                                                               >  2:1137935/1‑150 (MQ=11)
                                     tGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTaa                                                                                                              >  2:2029995/1‑150 (MQ=11)
                                     tGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGGAAAATGGTTTaa                                                                                                              >  1:3393835/1‑150 (MQ=11)
                                      gACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAAc                                                                                                             <  2:2741455/150‑1 (MQ=11)
                                      gACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAACAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAAc                                                                                                             >  1:4480634/1‑150 (MQ=11)
                                       aCATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACg                                                                                                            >  1:1617982/1‑150 (MQ=11)
                                       aCATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACg                                                                                                            <  2:589969/150‑1 (MQ=11)
                                        cATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGc                                                                                                           >  2:2531388/1‑150 (MQ=11)
                                          ttGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGcta                                                                                                         >  1:3849627/1‑148 (MQ=11)
                                          ttGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTAATGAGTAAAATGTTTTATAGATGCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGcta                                                                                                         <  2:2433172/150‑3 (MQ=11)
                                            gagtataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctact                                                                                                       <  2:4561430/147‑5 (MQ=11)
                                            gagtataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctact                                                                                                       >  1:269358/4‑146 (MQ=11)
                                             agtataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctacta                                                                                                      >  1:319880/3‑145 (MQ=11)
                                             agtataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctacta                                                                                                      <  2:1456308/148‑6 (MQ=11)
                                               tataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctactaaa                                                                                                    >  2:3201877/1‑143 (MQ=14)
                                               tataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctactaaa                                                                                                    >  1:1124164/1‑143 (MQ=14)
                                               tataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctactaaa                                                                                                    <  2:335783/150‑8 (MQ=14)
                                               tataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAACTTTGTCGAAAGGAAATCA‑‑ATATAGTAGGGCAAATGGAACAGTACAATGGTTTAACGctactaaa                                                                                                    >  1:3565476/1‑143 (MQ=11)
                                                    ttAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGAtt                                                                                               <  2:1475039/150‑1 (MQ=14)
                                                    ttAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGAtt                                                                                               >  2:1074656/1‑150 (MQ=14)
                                                     tAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGAttt                                                                                              >  2:2349879/1‑150 (MQ=11)
                                                     tAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGAttt                                                                                              >  1:717140/1‑150 (MQ=14)
                                                      aGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTg                                                                                             <  2:865727/150‑1 (MQ=14)
                                                        tgtTATTATAAAGAAGTAGATTTTGTCATTAGTATAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATTGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTggt                                                                                           <  2:4505706/150‑2 (MQ=11)
                                                        tgtTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAACTGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTggt                                                                                           >  1:1030530/1‑149 (MQ=11)
                                                          ttattaTAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGttt                                                                                         >  1:3168498/1‑150 (MQ=11)
                                                          ttattaTAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGttt                                                                                         >  1:1741541/1‑150 (MQ=11)
                                                          ttattaTAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGttt                                                                                         <  2:259666/150‑1 (MQ=11)
                                                           tattatAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTgttttt                                                                                        <  2:2242952/150‑6 (MQ=11)
                                                           tattatAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGtttt                                                                                        <  2:3663241/150‑1 (MQ=11)
                                                              tataAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAtt                                                                                     >  2:2451788/1‑149 (MQ=11)
                                                              tataAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAtt                                                                                     >  1:1280217/1‑149 (MQ=11)
                                                               ataaagaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAtta                                                                                    <  2:1971755/147‑3 (MQ=11)
                                                               ataaagaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAtta                                                                                    >  1:3809112/4‑148 (MQ=11)
                                                                 aaagaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAttacc                                                                                  >  2:1116383/2‑146 (MQ=11)
                                                                  aagaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTAcct                                                                                 <  2:735366/150‑3 (MQ=11)
                                                                   agaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAttacctc                                                                                <  2:700525/150‑7 (MQ=11)
                                                                   agaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAttacctc                                                                                >  2:3313877/1‑144 (MQ=11)
                                                                   agaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAttacctc                                                                                >  2:2624418/1‑144 (MQ=11)
                                                                   agaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAttacctc                                                                                >  2:2864875/1‑144 (MQ=11)
                                                                          gaTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagat                                                                         <  2:898395/149‑2 (MQ=11)
                                                                          gaTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagat                                                                         <  2:3086872/149‑2 (MQ=11)
                                                                           aTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatg                                                                        <  1:3362684/150‑3 (MQ=11)
                                                                            ttttGTCATGGGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAAGGGTTTAACGCTACTAAAGGAGTTGGTTTTATTACCTCTGAAGATgg                                                                       >  2:1619514/1‑150 (MQ=11)
                                                                              ttGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtc                                                                     >  1:4323904/1‑145 (MQ=11)
                                                                               tGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATACGATTTACAATTTTATCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggtca                                                                    >  2:3881048/1‑147 (MQ=11)
                                                                               tGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtca                                                                    >  1:2494871/1‑144 (MQ=11)
                                                                                gTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtcaa                                                                   <  2:3045762/150‑8 (MQ=11)
                                                                                gTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtcaa                                                                   <  2:1747376/150‑8 (MQ=11)
                                                                                   aTGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCAGAAGAAGGCAAAGAt                                                                >  2:3733735/1‑150 (MQ=11)
                                                                                     gAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGAttt                                                              >  1:2150218/1‑150 (MQ=11)
                                                                                     gAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGAttt                                                              >  1:2264538/1‑150 (MQ=11)
                                                                                      aGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTg                                                             >  1:3014162/1‑150 (MQ=11)
                                                                                       gTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGt                                                            <  2:3279455/150‑1 (MQ=11)
                                                                                        tAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTTAAGATGGTCAAGATTTGtt                                                           <  2:4136400/150‑1 (MQ=11)
                                                                                         aaaaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTc                                                          >  2:137802/1‑150 (MQ=11)
                                                                                           aaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGc                                                        >  2:1551902/1‑150 (MQ=11)
                                                                                              gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCa                                                     >  2:3142922/1‑150 (MQ=11)
                                                                                              gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCa                                                     >  2:646039/1‑150 (MQ=11)
                                                                                                tttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACt                                                   <  1:1287900/150‑1 (MQ=11)
                                                                                                 ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACtt                                                  >  2:4295978/1‑150 (MQ=11)
                                                                                                 ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACtt                                                  >  1:3608272/1‑150 (MQ=11)
                                                                                                  tataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtc                                                 >  1:3699607/1‑150 (MQ=11)
                                                                                                  tataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtc                                                 >  1:1795941/1‑150 (MQ=11)
                                                                                                  tataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtc                                                 <  2:1782186/150‑1 (MQ=11)
                                                                                                   ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct                                                <  2:4071142/150‑1 (MQ=11)
                                                                                                   ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct                                                >  1:1630965/1‑150 (MQ=11)
                                                                                                   ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct                                                >  2:2567785/1‑150 (MQ=11)
                                                                                                    taGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtctc                                               >  1:1582418/1‑150 (MQ=11)
                                                                                                                                               tgAACTAA‑‑ATAT‑‑TATAGAAAATTAAACATTAATATGGTTTAACGCAGATAAAAGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTATTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAACACTTGATGAAGGTCaaaa  <  2:2219729/149‑1 (MQ=11)
                                                                                                                                                       ||                                                                                                                                                
CATTACGATATGGATTTTATTAAT‑G‑GAGAGTAGTTTGACATTGACTATAATTAGTGTTATTATGAAGAAGTAAATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATGAGATTTACAATTTTGTCGAAAGGAAATAA‑‑ATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAACACTTGATGAAGGTCAAAA  >  CP043523/1848138‑1848428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑