Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP043523 | 1,894,994 | 0 | C | T | 72.2% | 1960.6 / inf | 2567 | L38L (CTC→CTT) | FTN78_chr1944 | Mobile element protein |
Reads supporting (aligned to +/- strand): ref base C (322/391); new base T (877/972); total (1201/1366) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.10e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 2586 total aligned reads displayed.
ACCCACTAAGCATTAGAAAGCGCACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTT > CP043523/1894849‑1895143 | aagcACTAAGCATTAGAAAGCTCACGATTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTCCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCaa < 2:2868204/147‑1 (MQ=1) aagcACTAAGCATTAGAAAGCTCACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCaa > 1:4324521/4‑150 (MQ=0) aaaGCTCACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGt < 1:4466512/150‑1 (MQ=1) aaGCGCACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGtt < 1:4019626/150‑1 (MQ=9) aaGCGCACGACCTATATGACTTATAATAGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGtg > 1:1075069/1‑149 (MQ=11) aaGCGCACGACCTATATGACTTATAATAGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGtg > 2:118451/1‑149 (MQ=11) gctcACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTAt < 2:201557/147‑1 (MQ=11) gcgcACGACTTATATGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTAt < 2:889026/150‑1 (MQ=255) ctcACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATc > 2:3215221/3‑150 (MQ=11) ctcACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATc > 2:1797199/3‑150 (MQ=11) cgcACGACTTATATGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATc < 1:100725/150‑1 (MQ=255) cgcACGACTTATATGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATc > 1:3384099/1‑150 (MQ=12) gcACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCg > 1:895429/1‑150 (MQ=12) aCGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCt > 2:2775679/1‑150 (MQ=255) aCGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCt < 1:3718518/150‑1 (MQ=11) cGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCtt > 1:680766/1‑150 (MQ=11) gACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTg > 2:4079412/1‑150 (MQ=12) aCTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGt > 1:1743308/1‑150 (MQ=11) aCTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGt > 1:962985/1‑150 (MQ=11) aCTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGt > 1:1894720/1‑150 (MQ=11) cTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGtt < 2:5258/150‑1 (MQ=11) ttATATGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTa < 2:1730530/150‑1 (MQ=255) tataTGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTAc < 1:2088210/150‑1 (MQ=11) atatGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTAcc > 1:1504065/1‑150 (MQ=12) atatGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTAcc > 1:3166832/1‑150 (MQ=17) atatGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTAcc > 1:625292/1‑150 (MQ=255) atatGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTAcc > 1:3049332/1‑150 (MQ=12) atGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGCCAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGCTACCtc > 1:2933948/1‑149 (MQ=255) cTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCCCGTTAcccctcgg > 2:3986421/1‑144 (MQ=11) tataATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGc > 1:1641484/1‑150 (MQ=255) ataataGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCg < 2:3288750/150‑1 (MQ=11) aataGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTa < 2:4168804/150‑1 (MQ=11) ataGCACACTTCCAAAAGTTTTTTTTTTTTTATTTACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTAc > 2:2085865/1‑150 (MQ=11) taGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACt > 1:3119202/1‑150 (MQ=11) aGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTg > 2:1289650/1‑150 (MQ=11) cacaCTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCa > 1:4176250/1‑150 (MQ=11) cacTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCAtt < 2:3400806/150‑1 (MQ=11) cacTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCAtt > 2:4410467/1‑150 (MQ=11) acTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCAttt > 1:231171/1‑150 (MQ=11) cTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACAtttt > 2:253259/1‑150 (MQ=11) ttCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTa > 1:2973984/1‑150 (MQ=255) tacAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAg > 1:2586360/3‑150 (MQ=11) tCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAg > 2:1583479/1‑150 (MQ=11) aaaGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGaa > 1:2850597/1‑150 (MQ=11) aaGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGaaa > 2:4307613/1‑150 (MQ=11) aaGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGaaa < 1:837973/150‑1 (MQ=11) aaGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGaaa < 2:1504006/150‑1 (MQ=11) gtctttGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAacg > 1:1942947/4‑149 (MQ=11) gTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAaca > 2:2159750/1‑150 (MQ=11) tttttGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAacac < 2:1962223/150‑1 (MQ=11) tttttGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAacac < 1:4387872/150‑1 (MQ=11) tGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTaa > 1:2762747/1‑150 (MQ=11) atttaCTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGcaa > 1:1808782/1‑148 (MQ=11) gACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCa < 2:4604596/150‑1 (MQ=11) cAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAAt > 1:2377735/1‑150 (MQ=11) aCCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTGGTGAAACGCTTAAAGCTAAGCACCAATTg > 1:323076/1‑150 (MQ=11) ccATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGATTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACAGTTTAGTGAAACACTTAAAGCAAAGCACCAATTgg > 2:4501203/1‑150 (MQ=11) aTTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCt > 1:2512773/1‑150 (MQ=11) tGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCa < 1:548810/150‑1 (MQ=11) tGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCa > 1:1591278/1‑150 (MQ=14) gagaCGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCaa < 2:2448762/150‑1 (MQ=11) agaCACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACTAATTGGCTCaaa > 2:3513779/1‑150 (MQ=14) gatttATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGtct > 1:2668097/3‑148 (MQ=14) tttATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTat < 1:1221606/150‑1 (MQ=11) tATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTattc < 1:1326763/150‑2 (MQ=14) tCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTattccc < 1:3480659/150‑1 (MQ=14) cAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcct > 2:1891334/1‑150 (MQ=11) aaaCGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttccta > 1:1993450/1‑150 (MQ=11) aaaCGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTattcccta > 1:2141581/1‑150 (MQ=14) aaCGAGTGTTCCCCTTGAGGTTCAAGACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaa > 2:3775201/1‑150 (MQ=11) aaCGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaa > 1:45718/1‑150 (MQ=11) aaCGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaa > 1:3546114/1‑150 (MQ=11) aCGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTattccctaat > 1:36275/1‑150 (MQ=14) cGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaatt < 2:3588389/150‑1 (MQ=11) cGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaatt < 2:263969/150‑1 (MQ=11) gggtgtTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGGTTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAAAACTTAAAGCAAAGCACCAATTGGCTCCAAGTCTatttcctaattt > 2:3027427/3‑150 (MQ=11) gAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaattt > 1:478266/1‑150 (MQ=11) gAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTattccctaattt < 1:2463521/150‑1 (MQ=14) aGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaatttc > 1:4084899/1‑150 (MQ=11) gtgtTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTatttcctaatttcc > 2:271025/1‑150 (MQ=14) tgtTTCCTTTGTGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTTATCGCTTGTTACCTCTGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCACAGTTTatttcctaatttcct > 2:2328273/1‑150 (MQ=11) tgtTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaatttcct < 2:3888298/150‑1 (MQ=11) tgtTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaatttcct < 1:1159361/150‑1 (MQ=11) tgtTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTatttcctaatttcct > 2:1660871/1‑150 (MQ=11) gtTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaatttccta > 2:62312/1‑150 (MQ=11) gtTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTattccctaatttccta > 2:1442319/1‑150 (MQ=11) ttCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAg < 2:2938489/150‑1 (MQ=11) ccccTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGaa < 2:1101938/150‑1 (MQ=11) cccTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAat > 1:2210080/1‑150 (MQ=11) cccTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAat < 1:3302719/150‑1 (MQ=11) ccTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAata > 1:3899374/1‑150 (MQ=11) ttGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAatagt < 2:3694332/150‑3 (MQ=11) ttGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATAtt < 1:3816084/150‑1 (MQ=11) gAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATtct > 1:76162/1‑150 (MQ=11) aGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATtctc < 2:792641/150‑1 (MQ=11) gAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGttcatc < 2:1386047/150‑6 (MQ=11) aaGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGCTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGt > 2:2248152/1‑150 (MQ=11) tCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATg > 2:703960/1‑150 (MQ=11) ccATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGc < 1:1426361/150‑1 (MQ=11) ntctcGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGccc > 2:3111598/2‑150 (MQ=11) | ACCCACTAAGCATTAGAAAGCGCACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTT > CP043523/1894849‑1895143 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |