Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP043523 | 1,895,006 | 0 | T | C | 71.2% | 1955.0 / inf | 2649 | D42D (GAT→GAC) | FTN78_chr1944 | Mobile element protein |
Reads supporting (aligned to +/- strand): ref base T (341/421); new base C (900/984); total (1244/1405) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.69e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 2652 total aligned reads displayed.
AAAGCGCACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCA > CP043523/1894865‑1895155 | aaGCTCACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGtt > 2:2450553/1‑150 (MQ=11) aaGCGCACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGtt < 1:4017049/150‑1 (MQ=9) aaGCGCACGACTTATATGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGtt > 1:83165/1‑150 (MQ=9) aaGCGCACGACTTATATGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGtt < 1:3794741/150‑1 (MQ=9) gcgcACGACTTATATGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTAt < 2:888929/150‑1 (MQ=255) ctcACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATc > 2:1797199/3‑150 (MQ=11) cgcACGACTTATATGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATc < 1:100725/150‑1 (MQ=255) tcACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGATACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCg < 2:4301506/149‑1 (MQ=11) tcACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCg > 1:1327766/2‑150 (MQ=11) aCGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCt < 1:2082401/150‑1 (MQ=11) cGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCtt > 1:2837208/1‑150 (MQ=12) gACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTg < 1:3102131/150‑1 (MQ=11) aCTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGt > 1:1743758/1‑150 (MQ=11) aCTTATATGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGt > 2:2021634/1‑150 (MQ=255) ttATATGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTa < 2:1730530/150‑1 (MQ=255) tataTGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTAc > 2:3684051/1‑150 (MQ=11) tataTGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTAc > 1:3360157/1‑150 (MQ=12) atatGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTAcc > 1:1504065/1‑150 (MQ=12) atatGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTAcc > 1:2136884/1‑150 (MQ=11) tatGACTTATAATAGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCt < 1:1992694/150‑1 (MQ=11) tatGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTACCt < 2:1284742/150‑1 (MQ=255) atGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTACCtc > 2:2256774/1‑149 (MQ=12) atGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTa > 1:2501803/1‑150 (MQ=11) tGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTACCtct < 1:2441663/150‑3 (MQ=255) gACTTATAATAGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCtgtg < 1:4568911/150‑1 (MQ=11) gACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATg < 2:3035974/150‑1 (MQ=11) aCTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTGCTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATgg > 2:4504648/1‑150 (MQ=11) cTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATggg > 2:2722918/1‑150 (MQ=11) cTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATggg > 1:622542/1‑150 (MQ=11) cTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATggg > 1:1812491/1‑150 (MQ=11) ttATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATgggg < 2:2940446/150‑1 (MQ=11) ataataGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCg < 2:3286254/150‑1 (MQ=11) aataGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTa < 1:3461734/150‑1 (MQ=11) aataGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTa < 1:3030487/150‑1 (MQ=11) aataGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTa < 2:4406400/150‑1 (MQ=11) ataGCACACTTCCAAAAGTTTTTTTTTATTTTCTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTAc > 2:2790959/1‑150 (MQ=11) ataGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTAc < 1:3218716/150‑1 (MQ=11) taGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGATTGTTCCCCTTGAGTTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATTGGGCGTACt > 2:1089348/1‑150 (MQ=11) taGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACt < 1:3615519/150‑1 (MQ=255) gCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGc > 1:2298201/1‑150 (MQ=11) cacaCTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCa > 1:4175423/1‑150 (MQ=11) cacaCTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCa < 1:326558/150‑1 (MQ=11) cacaCTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACa < 1:4083961/150‑1 (MQ=11) acacTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCAt < 2:143975/150‑1 (MQ=11) cacTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCAtt > 2:1896082/1‑150 (MQ=255) cacTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACAtt < 2:4074550/150‑1 (MQ=11) gcTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCAttt > 2:3583721/2‑150 (MQ=11) acTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCAttt > 1:4464376/1‑150 (MQ=11) cTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACAtttt > 1:1162951/1‑150 (MQ=11) tacAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAg < 2:1579448/148‑1 (MQ=11) tCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAg < 1:220911/150‑1 (MQ=11) tCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAg > 1:2732973/1‑150 (MQ=11) cAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTg < 2:3501465/150‑1 (MQ=11) aaaaGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGa < 1:1887814/150‑1 (MQ=11) aaaGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGaa > 2:788851/1‑150 (MQ=255) aaaGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGaa < 2:138093/150‑1 (MQ=11) aaaGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGaa > 1:257177/1‑150 (MQ=11) gtctttGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAacg > 1:1942947/4‑149 (MQ=11) gTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAacg > 2:3205822/1‑149 (MQ=11) tttttGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAacac < 1:4387872/150‑1 (MQ=11) ttttGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAATACt > 2:3978787/1‑150 (MQ=11) tttGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACtt > 2:264316/1‑150 (MQ=11) gTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTaaa > 1:1076873/1‑150 (MQ=11) tttatttaCTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAg < 2:60560/150‑1 (MQ=11) ttatttaCTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGc < 1:680643/150‑1 (MQ=11) tatttaCTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGca > 1:3528289/1‑149 (MQ=11) taCTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTaaagcaaagc > 2:1970192/1‑150 (MQ=11) aCTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAaagcaaagca < 1:1647855/150‑1 (MQ=11) gACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCa < 2:4604230/150‑1 (MQ=11) aaCCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAAtt > 2:1168654/1‑150 (MQ=11) cATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGc > 1:954516/1‑150 (MQ=11) ttGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTc < 2:4154620/150‑1 (MQ=11) ttGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTc < 1:2373889/150‑1 (MQ=14) tGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCa > 1:1591278/1‑150 (MQ=14) gagaCGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCaa > 1:3153022/1‑150 (MQ=11) gCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGttt > 1:1223742/1‑150 (MQ=11) gCTCTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGttt > 2:51769/1‑150 (MQ=11) cTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTa < 1:291956/150‑1 (MQ=11) cTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTa > 1:470507/1‑150 (MQ=14) tttATCCAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTat < 2:1660737/150‑1 (MQ=11) ttATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTatt < 1:388840/150‑1 (MQ=14) cAAACGAGTGTTCCCCCTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTatttcct < 1:3714903/150‑1 (MQ=14) aaCGCGTGTTCCCCTTGTGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaa < 2:3871165/150‑1 (MQ=11) aaCGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaa < 2:2331098/150‑1 (MQ=11) aCGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaat < 2:3120823/150‑1 (MQ=11) cGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTatttcctaatt > 1:4319081/1‑150 (MQ=14) gAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaattt < 1:54188/150‑1 (MQ=11) aGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTatttcctaatttc > 2:2098622/1‑150 (MQ=14) tgtTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaatttcct < 1:2970214/150‑1 (MQ=11) gtTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTatttcctaatttccta < 2:1500754/150‑1 (MQ=11) ccTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAata < 2:69065/150‑1 (MQ=11) gAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATtct > 1:76162/1‑150 (MQ=11) aGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATtctc > 2:2169073/1‑150 (MQ=11) ttCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCt > 2:3759360/1‑150 (MQ=11) cAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCttt < 1:2657921/150‑1 (MQ=11) ccATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGc > 2:2545196/1‑150 (MQ=11) tgCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCActcct < 2:3378331/149‑3 (MQ=2) gCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTa < 1:1431391/150‑1 (MQ=11) cAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTAc < 2:2872225/150‑1 (MQ=11) aCATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCg > 1:889971/1‑150 (MQ=11) | AAAGCGCACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCA > CP043523/1894865‑1895155 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |