| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP043523 | 1,883,610 | A→C | intergenic (+13/‑141) | FTN78_chr1928 → / → FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP043523 | 1,883,610 | 0 | A | C | 99.6% | 1808.4 / NA | 513 | intergenic (+13/‑141) | FTN78_chr1928/FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base C (235/276); total (237/276) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 513 total aligned reads displayed.
AACAAGAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGAAAAGTAAGTGATAGGATTGA‑TGCCAAAC‑TCGCCTGTGATACCTTAGAAATAGCTATAACTAAGAGGAAGCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGC > CP043523/1883467‑1883754 | aaCAAGAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTg < 1:2823481/150‑1 (MQ=255)aaCAAGAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTg > 2:2133043/1‑150 (MQ=255) cAAGAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑t > 2:532356/1‑150 (MQ=255) cAAGAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑t > 2:3169708/1‑150 (MQ=255) cAAGAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑t < 2:2368986/150‑1 (MQ=255) aaGAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑Tg > 1:1568067/1‑150 (MQ=255) aaGAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑Tg < 1:2029550/150‑1 (MQ=255) gAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGcc < 1:4153869/150‑1 (MQ=255) aaTTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCa < 1:3009897/150‑1 (MQ=255) aTTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCaa > 2:3483787/1‑150 (MQ=255) ttAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAc < 2:697525/150‑1 (MQ=255) aaCCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑Tc < 1:805492/150‑1 (MQ=255) aaCCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑Tc > 1:3960514/1‑150 (MQ=255) cccGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGc > 1:616033/1‑150 (MQ=255) ccGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGcc < 1:967437/150‑1 (MQ=255) cGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCt < 2:1179771/150‑1 (MQ=255) cGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCt < 1:3365380/150‑1 (MQ=255) gAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCtg > 2:152895/1‑150 (MQ=255) tCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGac < 1:626031/150‑2 (MQ=255) aaaTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCtt > 1:2595939/1‑150 (MQ=255) aaTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTGATCTCTGGGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTTATCGAATTGA‑CGCCAAAC‑TCGCCTGCGACACCTTa > 2:506338/1‑150 (MQ=255) accatgTTTGTACAACTAATTTAACTTATATTTCTTTATTTGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTAGTCAAGGAAATGTATTGCGTGTAAATTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAg > 2:4316127/6‑150 (MQ=255) aaGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGaaa < 1:2335009/150‑1 (MQ=255) ttGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGc < 2:1905441/150‑1 (MQ=255) aacaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATaaa > 1:228683/1‑149 (MQ=255) acaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATaaat > 1:3887732/1‑148 (MQ=255) caGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATaaata > 2:3779064/1‑147 (MQ=255) gATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAag < 1:4049589/150‑1 (MQ=255) gATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAag < 2:2827031/150‑1 (MQ=255) gATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAag > 2:2440032/1‑150 (MQ=255) ttCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAgg < 1:755801/150‑1 (MQ=255) tCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGa > 2:3282090/1‑150 (MQ=255) cACTTATATCTCTATAGGACCTACGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTTGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGaa < 2:4471075/150‑1 (MQ=255) aCTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGaat < 2:1589751/150‑2 (MQ=255) cTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGaatc < 2:1755463/150‑3 (MQ=255) ttATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATcc < 1:3804423/150‑1 (MQ=255) tataTCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCt < 2:1475344/150‑1 (MQ=255) tataTCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCt > 2:2919973/1‑150 (MQ=255) tatCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTaa > 2:73626/1‑150 (MQ=255) tctcTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAgg > 1:1599230/1‑150 (MQ=255) tctATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGCTCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGaa < 2:4012823/150‑1 (MQ=255) ctATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAA‑TCGCCTGCGAAACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAAc > 2:3527368/1‑150 (MQ=255) tataGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAAcc > 1:1353481/1‑150 (MQ=255) taGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATTTTCAAACTTCGCAACAGA‑ACC‑‑‑GAAATAGCTATAAATAAGAGGAAACCTAAGGAACCAAtt < 1:208395/150‑1 (MQ=255) aGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAt < 1:69836/150‑1 (MQ=255) aGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAt > 1:1169659/1‑150 (MQ=255) aGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAt > 2:3595634/1‑150 (MQ=255) ggAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAtt < 2:2299344/150‑1 (MQ=255) ggAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAtt < 1:1942234/150‑1 (MQ=255) gAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTa > 1:4389239/1‑150 (MQ=255) gAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTa < 2:2578413/150‑1 (MQ=255) gCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATc < 2:3142263/150‑1 (MQ=255) cTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCt < 1:32765/150‑1 (MQ=255) tAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCtt > 2:3051313/1‑150 (MQ=255) tAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCtt > 2:1054146/1‑150 (MQ=255) aGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTc < 2:4153478/150‑1 (MQ=255) gCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCa < 2:815558/150‑1 (MQ=255) gCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCa > 2:3640156/1‑150 (MQ=255) aTGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCgg > 2:3080018/1‑150 (MQ=255) aTGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCgg > 1:4222861/1‑150 (MQ=255) tGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGa > 2:4091078/1‑150 (MQ=255) tGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGa > 2:2636576/1‑150 (MQ=255) gTTTATCTCTGTGCTATTCTTGACCTCTCCTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAATC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGAt < 1:4589655/150‑1 (MQ=255) ttATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCa < 2:17830/150‑1 (MQ=255) aTCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAg > 1:1005242/1‑150 (MQ=255) aTCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAg < 1:2178760/150‑1 (MQ=255) ctctGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGa < 2:621959/150‑1 (MQ=255) ctGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAg < 2:1144685/150‑1 (MQ=255) gtgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGcc < 1:3648483/150‑1 (MQ=255) gtgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGcc > 2:439206/1‑150 (MQ=255) cTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAt > 1:1780685/1‑150 (MQ=255) aTTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAttt < 1:3103891/150‑1 (MQ=255) ttCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTa < 1:3561996/150‑1 (MQ=255) cTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTaaa > 2:590377/1‑150 (MQ=255) ttGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAAt > 2:1569089/1‑150 (MQ=255) ccTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGc > 1:2732022/1‑150 (MQ=255) ctACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTc > 1:3458920/1‑150 (MQ=255) aCTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCt > 2:1450022/1‑150 (MQ=255) cTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCtt < 1:2935703/150‑1 (MQ=255) cTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCtt > 2:3227752/1‑150 (MQ=255) tCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCttt > 2:852795/1‑150 (MQ=255) tCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTCAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGAGCAAGGAAGCCAATTTAAATCAGCTTCCttt < 2:1843070/150‑1 (MQ=255) ggAAGTGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTGCCTTTAGaa < 2:3834815/150‑1 (MQ=255) aaTGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGt < 1:252791/150‑1 (MQ=255) tGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGtta < 2:3350914/150‑1 (MQ=255) aTTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGttatta < 2:1387496/150‑1 (MQ=255) aTTGCCTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGttatta < 2:1721086/150‑1 (MQ=255) gCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGAt < 1:2788137/150‑1 (MQ=255) gCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGAt > 1:1389658/1‑150 (MQ=255) cGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATg < 1:552767/150‑1 (MQ=255) cGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATg < 1:1653316/150‑1 (MQ=255) cGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATg > 1:1443535/1‑150 (MQ=255) ggaaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGc < 2:2737192/148‑1 (MQ=255) ggaaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGc < 2:1628291/148‑1 (MQ=255) gaaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTGTAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCa < 1:1862524/149‑1 (MQ=255) gaaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCa > 1:3849037/2‑150 (MQ=255) aaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCAt < 2:913665/150‑1 (MQ=255) agtaagtGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCa < 2:2043996/150‑1 (MQ=255) agtaagtGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCa > 2:1292792/1‑150 (MQ=255) agtaagtGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCa < 1:4185322/150‑1 (MQ=255) | AACAAGAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGAAAAGTAAGTGATAGGATTGA‑TGCCAAAC‑TCGCCTGTGATACCTTAGAAATAGCTATAACTAAGAGGAAGCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGC > CP043523/1883467‑1883754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |