| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP043523 | 1,883,633 | T→C | intergenic (+36/‑118) | FTN78_chr1928 → / → FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP043523 | 1,883,633 | 0 | T | C | 99.8% | 1806.7 / NA | 512 | intergenic (+36/‑118) | FTN78_chr1928/FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (237/273); total (238/274) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 512 total aligned reads displayed.
TTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGAAAAGTAAGTGATAGGATTGATGCCAAACTCGCCTGTGATACCTTAGAAATAGCTATAACTAAGAGGAAGCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAAGCCTGG > CP043523/1883486‑1883776 | tCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGac < 2:3045775/150‑2 (MQ=255) aaaTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCtt < 1:4148996/150‑1 (MQ=255) aaaTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCtt > 1:3509885/1‑150 (MQ=255) aaTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTa < 2:840803/150‑1 (MQ=255) ttGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGc < 2:1905441/150‑1 (MQ=255) tGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCt < 1:4181491/150‑1 (MQ=255) acaacaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCtata < 1:986954/150‑1 (MQ=255) caacaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATaa > 1:2984490/1‑150 (MQ=255) caacaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATaa < 2:2713507/150‑1 (MQ=255) aacaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATaaa > 1:2763191/1‑149 (MQ=255) acaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATaaat > 1:3887732/1‑148 (MQ=255) acaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATaaat > 2:4007642/1‑148 (MQ=255) gATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAag > 2:2439861/1‑150 (MQ=255) aTTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAaga > 2:2747778/1‑150 (MQ=255) tttCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAagag < 2:4574871/150‑1 (MQ=255) ttCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAgg < 1:1965135/150‑1 (MQ=255) tCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGa > 2:3282090/1‑150 (MQ=255) cACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGaa < 1:3206680/150‑1 (MQ=255) aCTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGaat > 1:4036578/1‑149 (MQ=255) aCTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGaat < 1:2821258/150‑2 (MQ=255) ttATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATcc > 2:1769128/1‑150 (MQ=255) ttATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATcc > 2:4341693/1‑150 (MQ=255) tataTCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCt < 2:1475344/150‑1 (MQ=255) atatCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTa < 1:650332/150‑1 (MQ=255) tatCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTaa > 2:73626/1‑150 (MQ=255) tatCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTaa < 1:3756740/150‑1 (MQ=255) tctcTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAgg < 1:497314/150‑1 (MQ=255) tctATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGaa > 2:4416315/1‑150 (MQ=255) tctATAGGAGCAAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGAGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGaa > 2:4041394/1‑150 (MQ=255) nggAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAACTATAAATAAGAGGAATCCTAAGGAACCAAt > 1:1882543/2‑150 (MQ=255) aGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAt > 1:1169659/1‑150 (MQ=255) aGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAt > 2:1630516/1‑150 (MQ=255) aGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAt > 2:3595889/1‑150 (MQ=255) ggAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAtt < 2:1751417/150‑1 (MQ=255) gAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTa < 2:547853/150‑1 (MQ=255) aGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTAt > 1:3818201/1‑150 (MQ=255) gCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATc < 2:3142533/150‑1 (MQ=255) tAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCtt > 2:1561943/1‑150 (MQ=255) tAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCtt > 2:1054146/1‑150 (MQ=255) gCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCa > 2:3640156/1‑150 (MQ=255) gCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCa < 2:815287/150‑1 (MQ=255) aTGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCgg > 1:4222861/1‑150 (MQ=255) aTGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCgg < 1:4571396/150‑1 (MQ=255) tGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATCGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGa > 2:4474862/1‑150 (MQ=255) gTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGAt < 2:657048/150‑1 (MQ=255) gTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGAt > 2:2908360/1‑150 (MQ=255) aTCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAg > 1:1005242/1‑150 (MQ=255) tctcTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAgg < 2:3559697/150‑1 (MQ=255) ctGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAg < 2:1142313/150‑1 (MQ=255) tgtgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGc < 1:2297604/150‑1 (MQ=255) tgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCa > 1:617825/1‑150 (MQ=255) cTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAt < 2:1577882/150‑1 (MQ=255) aTTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAttt < 1:3103626/150‑1 (MQ=255) ttCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTa < 1:2051650/150‑1 (MQ=255) ttGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAAt < 2:1842968/150‑1 (MQ=255) aCCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCTTTCGGATCAAGGAAGCCAATTTAAATCAg < 2:1590499/150‑1 (MQ=255) ccTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGc < 2:1208964/150‑1 (MQ=255) ctACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTc < 1:3592074/150‑1 (MQ=255) tACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTcc > 2:3502594/1‑150 (MQ=255) aCTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCt > 2:1450022/1‑150 (MQ=255) cTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCtt > 2:3227752/1‑150 (MQ=255) tCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCttt > 2:618561/1‑150 (MQ=255) cAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTa < 1:1359497/150‑1 (MQ=255) cAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTa < 1:1685615/150‑1 (MQ=255) aaGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAg < 1:3338078/150‑1 (MQ=255) aGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCAAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTTATTGGGATAAAGGAAGCCAATTTAAATTAGATTTTTTTAGa > 1:2650232/1‑150 (MQ=255) ggAAGTGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTGCCTTTAGaa < 2:3834815/150‑1 (MQ=255) ggAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGaa > 1:2874073/1‑150 (MQ=255) ggAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGaa > 2:3102886/1‑150 (MQ=255) aaaTGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAg > 2:2551134/1‑150 (MQ=255) aaaTGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAg < 1:767811/150‑1 (MQ=255) aTGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGtt < 2:228683/150‑1 (MQ=255) tATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGttatt > 2:411306/1‑150 (MQ=255) ttGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAg > 1:1794493/1‑150 (MQ=255) tGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGa < 1:209613/150‑1 (MQ=255) cGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATg > 1:1443535/1‑150 (MQ=255) cGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATg < 1:552767/150‑1 (MQ=255) tggaaaGTCAGTGATCGAATTCATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAg < 1:3856840/147‑1 (MQ=255) tggaaaGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAg < 2:2595939/147‑1 (MQ=255) ggaaaGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGc < 2:1389592/148‑1 (MQ=255) ggaaaGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGc > 1:2365091/3‑150 (MQ=255) gaaaGGAAGTGATCGAATTGATGCCAAACTCCCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCa < 2:2364014/149‑1 (MQ=255) aagtGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAAtt > 1:2203142/1‑150 (MQ=255) gatcgaaTTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAAttgctt < 1:1629879/144‑1 (MQ=255) ntcgaaTTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAAttgcttg > 1:303157/6‑150 (MQ=255) atcgaaTTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAAttgcttg > 1:728636/6‑150 (MQ=255) cgaaTTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATtgcttgct < 1:881001/147‑1 (MQ=255) gaaTTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTgcttgctt > 2:3367318/3‑150 (MQ=255) gaaTTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTgcttgctt > 1:4283660/3‑150 (MQ=255) tGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCATTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTA < 2:3906804‑M1/150‑1 (MQ=255) gCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCC > 2:1329316‑M1/1‑150 (MQ=255) gCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCC > 2:2008335‑M1/1‑150 (MQ=255) cAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAt < 2:2064535‑M1/150‑2 (MQ=255) cAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAAAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATGAATTGCTTGCTTCTTACTCCAt > 2:4234568‑M1/1‑149 (MQ=255) aaaCTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAtt > 2:3792856‑M1/1‑148 (MQ=255) aaaCTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAtt < 1:152895‑M1/150‑3 (MQ=255) aaCTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttc > 1:4481666‑M1/1‑147 (MQ=255) aaCTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttc < 1:1392183‑M1/150‑4 (MQ=255) aCTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttca > 2:2821541‑M1/1‑146 (MQ=255) cGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaaga > 2:925230‑M1/1‑143 (MQ=255) | TTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGAAAAGTAAGTGATAGGATTGATGCCAAACTCGCCTGTGATACCTTAGAAATAGCTATAACTAAGAGGAAGCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAAGCCTGG > CP043523/1883486‑1883776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |