| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP043523 | 1,883,636 | T→C | intergenic (+39/‑115) | FTN78_chr1928 → / → FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP043523 | 1,883,636 | 0 | T | C | 99.8% | 1774.0 / NA | 505 | intergenic (+39/‑115) | FTN78_chr1928/FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (235/268); minor base A (1/0); total (236/269) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 505 total aligned reads displayed.
CCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGAAAAGTAAGTGATAGGATTGA‑TGCCAAAC‑TCGCCTGTGATACCTTAGAAATAGCTATAACTAAGAGGAAGCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAAGCCTGG > CP043523/1883490‑1883776 | aaaTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCtt > 1:2595939/1‑150 (MQ=255) aaTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTa < 2:840803/150‑1 (MQ=255) aaTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTa < 2:2357124/150‑1 (MQ=255) aGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAAt < 2:3206579/150‑1 (MQ=255) ttGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGc < 2:1905117/150‑1 (MQ=255) tGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCt > 1:3064962/1‑150 (MQ=255) acaacaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCtata > 2:1467488/1‑150 (MQ=255) acaacaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCtata > 2:1682275/1‑150 (MQ=255) aacaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATaaa > 2:4526753/1‑149 (MQ=255) gATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAag < 2:1116862/150‑1 (MQ=255) gATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAag > 2:2433436/1‑150 (MQ=255) aTTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAaga > 2:1358158/1‑150 (MQ=255) tttCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAagag < 2:4574871/150‑1 (MQ=255) ttCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAgg < 1:755801/150‑1 (MQ=255) aCTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGaat > 1:2287223/1‑149 (MQ=255) cTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGaatc < 2:1755463/150‑3 (MQ=255) ttATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGaatcc > 2:4433136/1‑147 (MQ=255) tataTCTCTATAGGAGCTAAGAGATATGTTTATCTGTGTGCTATTATTGAAGTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATAGAATTGA‑TGCCAAAC‑TCGGTTGTGACAGTTTAGAAAGATTTACAAATAAGAGGaatgct > 2:1982354/1‑146 (MQ=255) atatCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTa < 1:2800587/150‑1 (MQ=255) tatCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTaa > 2:73626/1‑150 (MQ=255) atCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTGAGAAATAGCTATAAATAAGAGGAATCCTAAg > 1:4164130/1‑150 (MQ=255) tctATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGCTCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGaa < 2:4012823/150‑1 (MQ=255) tataGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAAcc > 2:1155617/1‑150 (MQ=255) taGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATTTTCAAACTTCGCAACAGA‑ACC‑‑‑GAAATAGCTATAAATAAGAGGAAACCTAAGGAACCAAtt < 1:208395/150‑1 (MQ=255) aGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAt > 1:1169659/1‑150 (MQ=255) ggAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAtt < 1:2974361/150‑1 (MQ=255) ggAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAtt < 1:1942234/150‑1 (MQ=255) gAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTa < 2:2578413/150‑1 (MQ=255) gAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTa < 2:547853/150‑1 (MQ=255) gAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTa < 1:4078747/150‑1 (MQ=255) gCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATc < 2:3142263/150‑1 (MQ=255) cTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCt > 2:4114000/1‑150 (MQ=255) aaGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCttt < 2:1523517/150‑1 (MQ=255) gCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCa < 2:815287/150‑1 (MQ=255) gACATGTTTGTCTCTGTGCTATTCGTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCGAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTGCAtt > 2:3850564/1‑150 (MQ=255) gACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCAtt > 2:2899094/1‑150 (MQ=255) cATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCg < 1:711900/150‑1 (MQ=255) aTGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCgg > 2:3080018/1‑150 (MQ=255) tGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGa > 2:2636576/1‑150 (MQ=255) tGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGa > 2:3799195/1‑150 (MQ=255) gTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGAt < 2:657048/150‑1 (MQ=255) tATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCaa < 2:3597163/150‑1 (MQ=255) aTCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAg < 1:2178760/150‑1 (MQ=255) aTCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAg < 1:302879/150‑1 (MQ=255) aTCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAg > 1:1005242/1‑150 (MQ=255) aTCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAg < 1:4200716/150‑1 (MQ=255) tctcTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAgg < 2:3559697/150‑1 (MQ=255) tctGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGaa < 2:2059849/150‑1 (MQ=255) gtgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGcc < 1:3648483/150‑1 (MQ=255) cTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAt < 2:1578330/150‑1 (MQ=255) aTTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAttt < 2:3260882/150‑1 (MQ=255) tCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTaa < 1:508167/150‑1 (MQ=255) ttGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAAt < 2:1820748/150‑1 (MQ=255) ccTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGc > 1:450911/1‑150 (MQ=255) ctctACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCt > 1:2834852/1‑150 (MQ=255) ctACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTc < 1:3169708/150‑1 (MQ=255) ctACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTc > 1:3458920/1‑150 (MQ=255) tACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTcc > 2:3502339/1‑150 (MQ=255) tCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCttt > 2:618561/1‑150 (MQ=255) tCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCATGCGACACCTTAGAAATAGCTATAAATAAGAGGAGTCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCttt > 2:4078159/1‑150 (MQ=255) cAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTa < 1:1685615/150‑1 (MQ=255) cAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTa < 1:1359497/150‑1 (MQ=255) aaGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTCGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAg < 1:3976772/150‑1 (MQ=255) aaGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAg > 1:2034353/1‑150 (MQ=255) ggAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGaa > 1:588498/1‑150 (MQ=255) gAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGaaa > 1:4267276/1‑150 (MQ=255) aaTGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGt < 2:297473/150‑1 (MQ=255) aTGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGtt < 2:2282696/150‑1 (MQ=255) tGTATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGtta < 2:3350989/150‑1 (MQ=255) tATTGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCTACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGttatt < 1:3589825/150‑1 (MQ=255) ttGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAg > 1:1794493/1‑150 (MQ=255) tGCGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGa > 1:828673/1‑150 (MQ=255) cGTGGAAAGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATg > 1:1443535/1‑150 (MQ=255) ggaaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGc < 2:2737192/148‑1 (MQ=255) ggaaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGc > 1:2364779/3‑150 (MQ=255) ggaaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGc < 2:1618683/148‑1 (MQ=255) ggaaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGc < 2:1568067/148‑1 (MQ=255) ggaaaGTAAGTCATCGAAGTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTCTAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTACATCAGCTTCCTTTAGAAAGTTATTAGATGAGc < 2:4377007/148‑1 (MQ=255) gaaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTGTAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCa < 1:1862524/149‑1 (MQ=255) gaaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCa > 1:3849037/2‑150 (MQ=255) aaaGTAAGTGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCAt > 2:3648605/1‑150 (MQ=255) agtaagtGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCa < 1:2747778/150‑1 (MQ=255) agtaagtGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCa > 2:1292792/1‑150 (MQ=255) gtaagtGATCGAATTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCaa > 1:4590504/1‑150 (MQ=255) gatcgaaTTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAAttgctt < 1:1629879/144‑1 (MQ=255) atcgaaTTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAAttgcttg > 2:4287234/6‑150 (MQ=255) gaaTTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTgcttgctt < 2:1039395/148‑1 (MQ=255) gaaTTGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTgcttgctt > 2:1413179/3‑150 (MQ=255) tGA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCATTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTA < 2:3906804‑M1/150‑1 (MQ=255) gA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTAC < 1:4316127‑M1/150‑1 (MQ=255) gA‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTAC < 2:2541536‑M1/150‑1 (MQ=255) a‑TGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACT > 1:3881261‑M1/1‑150 (MQ=255) tGCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTC < 1:3799195‑M1/150‑1 (MQ=255) gCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCC < 1:643287‑M1/150‑1 (MQ=255) gCCAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCC < 1:3297586‑M1/150‑1 (MQ=255) ccAAAC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCA < 1:947741‑M1/150‑1 (MQ=255) aaaC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAtt < 1:152895‑M1/150‑3 (MQ=255) aaC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttc < 1:1392183‑M1/150‑4 (MQ=255) aC‑TCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttca > 2:2802508‑M1/1‑146 (MQ=255) cGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaaga > 2:925230‑M1/1‑143 (MQ=255) | CCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGAAAAGTAAGTGATAGGATTGA‑TGCCAAAC‑TCGCCTGTGATACCTTAGAAATAGCTATAACTAAGAGGAAGCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAAGCCTGG > CP043523/1883490‑1883776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |