BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP043523	1,848,201	G→A	intergenic (+186/‑91)	FTN78_chr1897 → / → FTN78_chr1898	Cold shock protein of CSP family/Cold shock protein of CSP family

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP043523	1,848,201	0	G	A	100.0%	622.0 / NA	277	intergenic (+186/‑91)	FTN78_chr1897/FTN78_chr1898	Cold shock protein of CSP family/Cold shock protein of CSP family
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (175/102); total (175/102)

Only 100 of 284 total aligned reads displayed.

TTGCTATTGCAAAAATGAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCATTACGATATGGATTTTATTAAT‑G‑GAGAGTAGTTTGACATTGACTATAATTAGTGTTATTATGAAGAAGTAAATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATGAGATTTACAATTTTGTCGAAAGGAAATAA‑‑ATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTAT  >  CP043523/1848055‑1848344

ttgctattgcAAAAATGAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATaaa                                                                                                                                                 <  1:1261403/150‑1 (MQ=37)

  gctattgcAAAAATGAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGTTTTCACTACAGTTAATAAAATCCATGTCACTACGATATGTATTTTATGAATCA‑GAGAGTAGTTTGAAATTGAGTATAATTAGTGTTATTATaaaga                                                                                                                                               >  1:2178562/1‑150 (MQ=255)

    tattgcAAAAATGAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAaggaag                                                                                                                                             >  1:3502652/1‑150 (MQ=37)

        gcAAAAATGAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTaga                                                                                                                                         >  1:1475175/1‑148 (MQ=37)

        gcAAAAATGAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTaga                                                                                                                                         <  1:2189473/150‑3 (MQ=37)

         cAAAAATGAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTagat                                                                                                                                        >  1:3663241/1‑147 (MQ=37)

           aaaaTGAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGAttt                                                                                                                                      >  1:1957807/1‑150 (MQ=25)

            aaaTGAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGAtttt                                                                                                                                     >  1:2694156/1‑150 (MQ=37)

               tGAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTc                                                                                                                                  >  1:335783/1‑150 (MQ=25)

                gAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCa                                                                                                                                 >  1:1746860/1‑150 (MQ=25)

                     aaaaTGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGt                                                                                                                            <  1:258310/150‑1 (MQ=25)

                      aaaTGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTa                                                                                                                           <  1:3943617/150‑1 (MQ=25)

                        aTGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTaaa                                                                                                                         >  1:2741455/1‑150 (MQ=25)

                         tGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTaaaa                                                                                                                        <  1:2919505/150‑1 (MQ=21)

                         tGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAAT‑CAGAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTaaaa                                                                                                                        >  1:4561430/1‑150 (MQ=25)

                              taCTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGttt                                                                                                                   >  1:735366/1‑150 (MQ=21)

                              taCTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAAT‑CAGAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGttt                                                                                                                   <  1:3570770/150‑1 (MQ=21)

                                cTGAGTGAGNGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTta                                                                                                                 >  1:4133199/1‑150 (MQ=21)

                                 tgagtgagGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTtat                                                                                                                >  1:251987/1‑150 (MQ=21)

                                    gtgagGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAAT‑CAGAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAgt                                                                                                             <  1:4241937/150‑2 (MQ=18)

                                        gggAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCa                                                                                                         >  1:3045762/1‑150 (MQ=21)

                                        gggAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCa                                                                                                         >  1:3086872/1‑150 (MQ=21)

                                          naaaGATTAGTTGCTTTCCCTACAGTTCATAAAATCCAAGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATCAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACt                                                                                                       >  2:4503221/2‑150 (MQ=17)

                                          gAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACt                                                                                                       >  2:3604234/1‑150 (MQ=18)

                                             aGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACtttt                                                                                                    <  1:4511008/150‑1 (MQ=18)

                                              gATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTc                                                                                                   >  1:1692978/1‑150 (MQ=18)

                                                 tAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATCAGTAAAATGTTTTATAGATTCACTTTTCGCa                                                                                                >  1:4174224/1‑150 (MQ=18)

                                                    ttGCTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCtaaa                                                                                             >  1:4108100/1‑150 (MQ=21)

                                                       cTTTCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAAtaa                                                                                          >  1:700525/1‑148 (MQ=18)

                                                        tttCCCTACACTTCATAAAATCCATGTCACTACGATATGGCTTGTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATaag                                                                                         <  1:4385831/150‑1 (MQ=18)

                                                         ttCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATaaga                                                                                        <  1:1062208/150‑1 (MQ=18)

                                                          tCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGAt                                                                                       >  1:842734/1‑150 (MQ=18)

                                                              tACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTAc                                                                                   >  1:2838851/1‑150 (MQ=18)

                                                                 ngTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAAt                                                                                >  2:1885771/2‑150 (MQ=18)

                                                                   ttCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAAttt                                                                              <  2:649911/150‑1 (MQ=17)

                                                                    tCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGCGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGACTTACAAtttt                                                                             >  2:1560932/1‑150 (MQ=18)

                                                                    tCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAAtttt                                                                             >  1:1024838/1‑150 (MQ=18)

                                                                      aTAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGt                                                                           <  2:1684134/150‑1 (MQ=18)

                                                                       tAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTc                                                                          <  2:1066125/150‑1 (MQ=18)

                                                                        aaaaTCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCg                                                                         >  1:3700597/1‑150 (MQ=18)

                                                                          aaTCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGaa                                                                       <  2:1808494/150‑1 (MQ=18)

                                                                          aaTCCATGTCACTACGATATGGATTTTATTAAT‑CAGAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGaa                                                                       >  2:568793/1‑150 (MQ=17)

                                                                           aTCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGaaa                                                                      >  1:2260137/1‑150 (MQ=17)

                                                                            tCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAg                                                                     <  2:3113376/150‑1 (MQ=17)

                                                                             ccATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAgg                                                                    <  1:900691/150‑1 (MQ=17)

                                                                                tGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaa                                                                 >  1:1782186/1‑150 (MQ=17)

                                                                                tGTCACTACGATATGGATTTTATTAAT‑CAGAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaa                                                                 <  2:2048064/150‑1 (MQ=17)

                                                                                 gTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaat                                                                >  2:3364956/1‑150 (MQ=17)

                                                                                  tcactACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaata                                                               <  2:227006/146‑1 (MQ=17)

                                                                                   cactACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa                                                              >  2:3237923/4‑150 (MQ=17)

                                                                                   cacaaCGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAATGaaataa                                                              >  2:3237452/5‑150 (MQ=14)

                                                                                    actACGATATGGATTTTATTAAT‑CAGAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa‑‑a                                                           <  2:230513/148‑1 (MQ=17)

                                                                                      tACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTTGAAAGGAaataa‑‑ata                                                         >  2:2764713/1‑150 (MQ=17)

                                                                                      tACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAaataa‑‑ata                                                         >  2:2459926/1‑150 (MQ=17)

                                                                                        cGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCCTGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGACTTACAATTTTGTCGAAAGGAAATAA‑‑atata                                                       >  1:3193048/1‑149 (MQ=17)

                                                                                        cGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atata                                                       >  2:817582/1‑149 (MQ=17)

                                                                                         gATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatat                                                      <  2:2838961/150‑3 (MQ=14)

                                                                                         gATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatat                                                      >  1:3008493/1‑148 (MQ=17)

                                                                                         gATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatat                                                      >  1:2213562/1‑148 (MQ=17)

                                                                                          atatGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCAGTTTTCGCAAAATAAGATTTACAATTTTGTTGAAAGGAAATAA‑‑atatatt                                                     <  2:4111378/150‑4 (MQ=17)

                                                                                          atatGGATTTTATTAAT‑CAGAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATATTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatatt                                                     <  2:4158242/150‑4 (MQ=17)

                                                                                           tatGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatatta                                                    >  1:1421770/1‑146 (MQ=14)

                                                                                           tatGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatatta                                                    <  2:868462/150‑5 (MQ=14)

                                                                                            atGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCAGTTTTCGCAAAATAAGAGTTACAATTTTGTCGAAAGGAAATAA‑‑atatattat                                                   <  2:4588309/150‑6 (MQ=14)

                                                                                            atGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatattat                                                   >  1:528366/1‑145 (MQ=14)

                                                                                             tGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatattatg                                                  <  2:3845136/150‑7 (MQ=14)

                                                                                                  tttATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCaaa                                               >  1:1733200/1‑150 (MQ=14)

                                                                                                         aatcagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAAc                                         >  1:884981/6‑150 (MQ=14)

                                                                                                          atcagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACa                                        <  2:1334393/146‑1 (MQ=14)

                                                                                                          atcagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACa                                        >  2:1710208/5‑150 (MQ=14)

                                                                                                            cagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGt                                      >  2:292383/3‑150 (MQ=14)

                                                                                                            cagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGt                                      <  2:2639183/148‑1 (MQ=14)

                                                                                                            cagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGt                                      <  2:137497/148‑1 (MQ=14)

                                                                                                             agagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTa                                     <  2:334722/149‑1 (MQ=14)

                                                                                                              gagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTaa                                    <  2:3923998/150‑1 (MQ=14)

                                                                                                                  gtagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATg                                >  2:2002058/1‑150 (MQ=11)

                                                                                                                  gtagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATg                                >  1:3284157/1‑150 (MQ=11)

                                                                                                                   tagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATgg                               >  2:4234692/1‑150 (MQ=11)

                                                                                                                   tagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATgg                               <  2:2059851/150‑1 (MQ=11)

                                                                                                                   tagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATgg                               >  1:943953/1‑150 (MQ=11)

                                                                                                                    agtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGAAAACTGGt                              >  2:1260898/1‑150 (MQ=11)

                                                                                                                       ttGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTa                           >  2:1137934/1‑150 (MQ=11)

                                                                                                                          aCATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACg                        >  1:1618761/1‑150 (MQ=11)

                                                                                                                           cATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGc                       >  1:3563970/1‑150 (MQ=11)

                                                                                                                             ttGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTAATGAGTAAAATGTTTTATAGATGCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGcta                     <  2:2433172/150‑3 (MQ=11)

                                                                                                                              tGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGctac                    >  1:3825660/1‑147 (MQ=11)

                                                                                                                               gagtataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGctact                   <  2:4561430/147‑5 (MQ=11)

                                                                                                                                agtataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGctacta                  <  2:1456308/148‑6 (MQ=11)

                                                                                                                                  tataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGctactaaa                >  1:1124164/1‑143 (MQ=14)

                                                                                                                                     aaTTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGa             >  2:2175189/1‑150 (MQ=14)

                                                                                                                                       ttAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGAtt           <  2:1475039/150‑1 (MQ=14)

                                                                                                                                        tAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGAttt          >  2:2349879/1‑150 (MQ=11)

                                                                                                                                          gtgtTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTgg        <  2:2862307/150‑1 (MQ=11)

                                                                                                                                           tgtTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTggt       >  2:1346135/1‑149 (MQ=11)

                                                                                                                                            gtTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTggtt      >  2:716033/1‑148 (MQ=11)

                                                                                                                                             ttattaTAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGttt     <  2:260169/150‑1 (MQ=11)

                                                                                                                                             ttattaTAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGttt     >  1:3168498/1‑150 (MQ=11)

                                                                                                                                             ttattaTAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGttt     >  2:1004747/1‑150 (MQ=11)

                                                                                                                                              tattatAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGtttt    >  1:3430261/1‑150 (MQ=11)

                                                                                                                                                ttatAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAt  <  1:4503986/150‑1 (MQ=11)

TTGCTATTGCAAAAATGAATTAAAATGTTATACTGAGTGAGGGAAAGATTAGTTGCTTTCCCTACAGTTCATAAAATCCATGTCATTACGATATGGATTTTATTAAT‑G‑GAGAGTAGTTTGACATTGACTATAATTAGTGTTATTATGAAGAAGTAAATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATGAGATTTACAATTTTGTCGAAAGGAAATAA‑‑ATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTAT  >  CP043523/1848055‑1848344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`