BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP043523	1,848,257	G→A	intergenic (+242/‑35)	FTN78_chr1897 → / → FTN78_chr1898	Cold shock protein of CSP family/Cold shock protein of CSP family

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP043523	1,848,257	0	G	A	100.0%	568.1 / NA	296	intergenic (+242/‑35)	FTN78_chr1897/FTN78_chr1898	Cold shock protein of CSP family/Cold shock protein of CSP family
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (185/111); total (185/111)

Only 100 of 302 total aligned reads displayed.

TTTCCCTACAGTTCATAAAATCCATGTCATTACGATATGGATTTTATTAAT‑G‑GAGAGTAGTTTGACATTGACTATAATTAGTGTTATTATGAAGAAGTAAATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATGAGATTTACAATTTTGTCGAAAGGAAATAA‑‑ATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCA  >  CP043523/1848111‑1848384

tttCCCTACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGGAGTTTGACATTGAGTATAATTCGTGTTATTATAAAGAAGTAGATCTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATaag                                                                                                                                   >  1:65580/1‑150 (MQ=17)

      tACAGTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTAc                                                                                                                             >  1:2838851/1‑150 (MQ=18)

          gTTCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAAtt                                                                                                                         >  1:1219552/1‑150 (MQ=18)

           ttCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAAttt                                                                                                                        <  2:1269041/150‑1 (MQ=18)

            tCATAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAAtttt                                                                                                                       >  1:1024838/1‑150 (MQ=18)

              aTAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGt                                                                                                                     <  2:1684134/150‑1 (MQ=18)

              aTAAAATCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGt                                                                                                                     <  2:4578476/150‑1 (MQ=18)

                aaaaTCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCg                                                                                                                   >  1:3700597/1‑150 (MQ=18)

                  aaTCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGACTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGaa                                                                                                                 >  2:2986538/1‑150 (MQ=17)

                   aTCCATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGaaa                                                                                                                <  2:1147233/150‑1 (MQ=17)

                     ccATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAgg                                                                                                              <  1:900691/150‑1 (MQ=17)

                     ccATGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAgg                                                                                                              >  1:4071142/1‑150 (MQ=17)

                        tGTCACTACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaa                                                                                                           >  1:1782186/1‑150 (MQ=17)

                          tcactACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaata                                                                                                         <  2:227006/146‑1 (MQ=17)

                           cactACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa                                                                                                        >  1:4204769/4‑150 (MQ=17)

                           cactACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa                                                                                                        >  2:3237651/4‑150 (MQ=17)

                           cactACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa                                                                                                        <  2:211874/147‑1 (MQ=17)

                            actACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa‑‑a                                                                                                     <  2:136725/148‑1 (MQ=17)

                            actACGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa‑‑a                                                                                                     >  2:757164/3‑150 (MQ=17)

                            actACGATATGGATTTTATTAAT‑CAGAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGaaataa‑‑a                                                                                                     <  2:230513/148‑1 (MQ=17)

                                cGATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTTGAAAGGAAATAA‑‑atata                                                                                                 >  1:1920777/1‑149 (MQ=17)

                                 gATATGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatat                                                                                                <  2:2838961/150‑3 (MQ=14)

                                  atatGGATTTTATTAAT‑CAGAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATATTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatatt                                                                                               <  2:4158242/150‑4 (MQ=17)

                                    atGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatattat                                                                                             >  1:526137/1‑145 (MQ=14)

                                     tGGATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatattatg                                                                                            <  1:4459945/150‑7 (MQ=14)

                                      ggATTTTATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑atatattatgg                                                                                           <  2:4134597/150‑8 (MQ=14)

                                          tttATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCaaa                                                                                       <  1:1110358/150‑1 (MQ=14)

                                          tttATTAATCA‑GAGAGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCaaa                                                                                       >  1:1733200/1‑150 (MQ=14)

                                                  atcagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACa                                                                                >  2:1710208/5‑150 (MQ=14)

                                                    cagagaGTAGTTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGt                                                                              >  1:865727/3‑150 (MQ=14)

                                                     agagaGTAGTCTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTa                                                                             >  2:1002264/2‑150 (MQ=14)

                                                          gtagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATg                                                                        >  2:4602586/1‑150 (MQ=11)

                                                           tagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATgg                                                                       >  2:4234692/1‑150 (MQ=11)

                                                           tagtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATgg                                                                       <  2:2768643/150‑1 (MQ=11)

                                                             gtTTGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGtt                                                                     >  2:685339/1‑150 (MQ=11)

                                                              tttGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGttt                                                                    >  2:1435565/1‑150 (MQ=11)

                                                              tttGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGttt                                                                    >  1:1284203/1‑150 (MQ=11)

                                                                tGACATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTaa                                                                  >  2:2029995/1‑150 (MQ=11)

                                                                  aCATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACg                                                                <  2:589969/150‑1 (MQ=11)

                                                                  aCATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACg                                                                <  2:1833234/150‑1 (MQ=11)

                                                                  aCATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACg                                                                >  1:1617982/1‑150 (MQ=11)

                                                                   cATTGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGc                                                               >  2:2531388/1‑150 (MQ=11)

                                                                     ttGAGTATAATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGcta                                                             >  1:3849627/1‑148 (MQ=11)

                                                                       gagtataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctact                                                           >  1:269358/4‑146 (MQ=11)

                                                                        agtataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctacta                                                          <  2:1456308/148‑6 (MQ=11)

                                                                        agtataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctacta                                                          >  1:319880/3‑145 (MQ=11)

                                                                         gtataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctactaa                                                         <  2:2865589/149‑7 (MQ=11)

                                                                          tataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctactaaa                                                        >  2:892213/1‑143 (MQ=14)

                                                                          tataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGctactaaa                                                        <  2:335783/150‑8 (MQ=14)

                                                                          tataATTAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAACTTTGTCGAAAGGAAATCA‑‑ATATAGTAGGGCAAATGGAACAGTACAATGGTTTAACGctactaaa                                                        >  1:3565476/1‑143 (MQ=11)

                                                                               ttAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGAtt                                                   >  2:1074656/1‑150 (MQ=14)

                                                                               ttAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGAtt                                                   <  2:1475039/150‑1 (MQ=14)

                                                                                tAGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGAttt                                                  >  2:2349879/1‑150 (MQ=11)

                                                                                 aGTGTTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTg                                                 <  2:865727/150‑1 (MQ=14)

                                                                                  gtgtTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTgg                                                <  2:2862307/150‑1 (MQ=11)

                                                                                   tgtTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTggt                                               >  2:1343152/1‑149 (MQ=11)

                                                                                    gtTATTATAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTggtt                                              >  2:2051800/1‑148 (MQ=11)

                                                                                     ttattaTAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGttt                                             >  1:3168498/1‑150 (MQ=11)

                                                                                     ttattaTAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGttt                                             <  2:260169/150‑1 (MQ=11)

                                                                                     ttattaTAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCAAATTTCGAAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGttt                                             <  2:3416525/150‑1 (MQ=11)

                                                                                      tattatAAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGtttt                                            >  1:3430261/1‑150 (MQ=11)

                                                                                         tataAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAtt                                         >  2:2451788/1‑149 (MQ=11)

                                                                                         tataAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAtt                                         >  1:3648906/1‑149 (MQ=11)

                                                                                          ataaagaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAtta                                        >  1:3809112/4‑148 (MQ=11)

                                                                                           taaagaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAttac                                       >  2:3714670/3‑147 (MQ=11)

                                                                                           taaagaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAttac                                       >  2:191472/3‑147 (MQ=11)

                                                                                            aaagaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAttacc                                      >  2:1116383/2‑146 (MQ=11)

                                                                                             aagaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAttacct                                     >  2:1046277/1‑145 (MQ=11)

                                                                                             aagaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTAcct                                     <  2:735366/150‑3 (MQ=11)

                                                                                              agaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAttacctc                                    >  2:2624459/1‑144 (MQ=11)

                                                                                              agaagTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTAttacctc                                    >  2:3313877/1‑144 (MQ=11)

                                                                                                    agaTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaaga                              >  1:1448165/3‑150 (MQ=11)

                                                                                                     gaTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagat                             >  2:2415529/2‑149 (MQ=11)

                                                                                                      aTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatg                            <  1:3362684/150‑3 (MQ=11)

                                                                                                      aTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatg                            <  2:1957807/150‑3 (MQ=11)

                                                                                                       ttttGTCATGGGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAAGGGTTTAACGCTACTAAAGGAGTTGGTTTTATTACCTCTGAAGATgg                           >  2:1619514/1‑150 (MQ=11)

                                                                                                         ttGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggtc                         <  2:2694156/150‑3 (MQ=11)

                                                                                                         ttGTCATGAGTAAAATGTTTTATACATTCACTTTTCGAAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggtc                         <  2:4543498/150‑3 (MQ=11)

                                                                                                          tGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATACGATTTACAATTTTATCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggtca                        >  2:3881048/1‑147 (MQ=11)

                                                                                                          tGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtca                        >  1:2494871/1‑144 (MQ=11)

                                                                                                           gTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtcaa                       <  2:3046944/150‑8 (MQ=11)

                                                                                                           gTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtcaa                       <  2:2239668/150‑8 (MQ=11)

                                                                                                           gTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtcaa                       <  2:1747376/150‑8 (MQ=11)

                                                                                                                gAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGAttt                  >  1:2150218/1‑150 (MQ=11)

                                                                                                                gAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGAttt                  >  1:2264538/1‑150 (MQ=11)

                                                                                                                 aGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTg                 >  1:3014162/1‑150 (MQ=11)

                                                                                                                    aaaaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTc              >  1:4272953/1‑150 (MQ=11)

                                                                                                                    aaaaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTc              >  2:3245014/1‑150 (MQ=11)

                                                                                                                    aaaaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTc              >  2:3103549/1‑150 (MQ=11)

                                                                                                                    aaaaTGTTTTATAGATTCACTTTTCGCAAAAGAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTACAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTc              >  2:3569472/1‑150 (MQ=11)

                                                                                                                      aaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGc            >  2:1551902/1‑150 (MQ=11)

                                                                                                                         gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATTGTCAAGATTTGTTCGCTCa         <  2:4108100/150‑1 (MQ=11)

                                                                                                                         gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCa         >  2:646039/1‑150 (MQ=11)

                                                                                                                         gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCa         >  2:3143518/1‑150 (MQ=11)

                                                                                                                            ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACtt      >  2:4295978/1‑150 (MQ=11)

                                                                                                                            ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACtt      >  2:3842945/1‑150 (MQ=11)

                                                                                                                              ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct    <  2:4071142/150‑1 (MQ=11)

                                                                                                                              ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct    >  2:2568421/1‑150 (MQ=11)

                                                                                                                               taGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtctc   >  1:1582418/1‑150 (MQ=11)

                                                                                                                               taGACTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtctc   <  1:2986538/150‑1 (MQ=2)

TTTCCCTACAGTTCATAAAATCCATGTCATTACGATATGGATTTTATTAAT‑G‑GAGAGTAGTTTGACATTGACTATAATTAGTGTTATTATGAAGAAGTAAATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATGAGATTTACAATTTTGTCGAAAGGAAATAA‑‑ATAT‑‑TATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCA  >  CP043523/1848111‑1848384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`