| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP043523 | 1,885,221 | C→T | S301S (AGC→AGT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP043523 | 1,885,221 | 0 | C | T | 99.8% | 1253.9 / NA | 520 | S301S (AGC→AGT) | FTN78_chr1930 | Putative UV‑damage repair protein UvrX |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (233/286); minor base A (0/1); total (233/287) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 520 total aligned reads displayed.
AATCGGAAAACGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCTTTTTTGCTGAAGCAAAAATTAGGAATAATTGGACTTCAACATTTTTTCCATGCTAACG‑GAATCGATGAAAGCAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATCGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTGAGAAAGGGCGGAAA > CP043523/1885074‑1885367 | aattggAAAGCGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTaa < 2:296691/146‑1 (MQ=255) attggAAAGCGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAAc < 1:3595373/147‑1 (MQ=2) attggAAAGCGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAAc > 2:3960490/4‑150 (MQ=2) ttggAAAGCGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACg < 1:431076/148‑1 (MQ=14) ttggAAAGCGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACg < 1:2080925/148‑1 (MQ=14) ttggAAAGCGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACg < 2:110616/148‑1 (MQ=14) gAAAGCGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTaa < 2:840998/150‑1 (MQ=14) aaagcGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAag < 2:3451270/146‑1 (MQ=9) aagcGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAaga < 2:2848042/147‑1 (MQ=255) agcGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAGCAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAagag < 1:3224709/148‑1 (MQ=255) agcGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAagag > 2:381822/3‑150 (MQ=14) gcGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGAGCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAgaga < 1:3980435/149‑1 (MQ=9) tattgcgagaAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGaa > 2:4545302/7‑150 (MQ=255) cGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAgagan < 2:3882855/150‑2 (MQ=14) gAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTGCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGaaa < 1:143871/150‑1 (MQ=255) aaCTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGaaaa > 2:2451346/1‑150 (MQ=14) aaCTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGaaaa > 1:952841/1‑150 (MQ=14) aaCTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGaaaa < 1:2905562/150‑1 (MQ=255) aCTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCTACTC‑AACGTGAATTGAGGAAAGTAACGTAAGAGaaaaa > 2:74541/1‑150 (MQ=9) tGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAata > 2:1987268/1‑150 (MQ=255) gagaAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAatat < 1:3932048/150‑1 (MQ=255) agaAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAAtata > 1:326588/1‑150 (MQ=14) gaAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATAc < 2:3258968/150‑1 (MQ=14) gaAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATAc < 1:4122910/150‑1 (MQ=14) gaAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATAc > 2:947758/1‑150 (MQ=255) aaCGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTc > 2:2083820/1‑150 (MQ=14) aCGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTcc > 2:1559481/1‑150 (MQ=14) aCGAATAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTcc < 1:1748463/150‑1 (MQ=14) aTTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCaaa < 2:585222/150‑1 (MQ=255) ttAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCaaaa < 1:692694/150‑1 (MQ=14) aaacaaacTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATc < 1:306773/150‑1 (MQ=255) aaacaaacTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATc < 1:300329/150‑1 (MQ=255) aacaaacTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATct > 1:3465885/1‑150 (MQ=14) aacaaacTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATct < 1:4505628/150‑1 (MQ=255) acaaacTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATcta > 2:3123954/1‑150 (MQ=14) aaacTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATctact < 2:3356238/150‑1 (MQ=255) aacTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATctacta < 2:678807/150‑1 (MQ=255) aacTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATAGACTCCAAAATctacta > 1:3718356/1‑150 (MQ=9) cTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGc < 2:1606473/150‑1 (MQ=14) ttGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCt > 2:4184626/1‑150 (MQ=255) tGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCtt < 1:477777/150‑1 (MQ=255) tGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCtn < 2:3747787/150‑2 (MQ=255) ggAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTc < 2:4484345/150‑1 (MQ=11) cACTTCTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCaa < 1:813180/150‑1 (MQ=11) cTATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATtctc < 2:2927583/150‑1 (MQ=255) tATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCa < 2:1921232/150‑1 (MQ=11) tATCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCa > 1:2360929/1‑150 (MQ=11) aTCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCaa < 2:2797165/150‑1 (MQ=11) tCAAAGAGCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCaaa < 1:1821099/150‑1 (MQ=11) agagCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCt < 1:3042713/150‑1 (MQ=11) agagCTTGCGAATGCTGACCCACTACTACTTAAACAAAAATAGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGCAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCt < 2:2776811/150‑1 (MQ=11) gagCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTg < 2:2608329/150‑1 (MQ=11) gCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAATAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGcc < 2:4425565/150‑1 (MQ=14) gCTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGcc < 1:982985/150‑1 (MQ=11) cTTGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCa < 1:2210543/150‑1 (MQ=11) ttGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCAc > 1:898496/1‑150 (MQ=11) ttGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCAc < 2:1206281/150‑1 (MQ=11) ttGCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCAc > 1:1710086/1‑150 (MQ=11) gCGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGt > 2:1330867/1‑150 (MQ=11) cGAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTg < 1:547956/150‑1 (MQ=11) gAATGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGa > 1:258652/1‑150 (MQ=11) aTGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTTACt > 2:853270/1‑150 (MQ=11) aTGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACt > 1:2012185/1‑150 (MQ=11) tGCTGACCCACTTCTCCTTAAACAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTa < 1:3396135/150‑1 (MQ=11) ccttaaacAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTTGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAgaga < 2:4098359/143‑1 (MQ=17) cttaaacAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGaa > 2:3663221/7‑150 (MQ=17) ttaaacAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGaaa > 1:415552/6‑150 (MQ=17) taaacAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAAt < 2:1767773/146‑1 (MQ=17) aacAAAAATTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAAttg > 1:1544922/3‑148 (MQ=17) aaaTTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACtt > 2:1145475/1‑150 (MQ=17) aaTTGGGAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTtg > 1:133000/1‑150 (MQ=18) aaTTGGAAAAAATTGGAATTCAGCATTTTTTCCACGCAAACG‑GAACTGACGAAAGTAAAGTAAGAGAAAAATATACTCCAAAATCTACTCGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGaaattgaaattg < 2:31785/150‑1 (MQ=17) attgggAACAATTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTtgt < 1:2790187/146‑1 (MQ=17) gggAACAATTGGACTTCAGCATTTTTTTTTTGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGAt > 2:1408355/2‑150 (MQ=17) gAACAATTGGACTTCAGCATTTTTTTTACTCTTACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTa > 2:107169/1‑150 (MQ=18) caatTGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAg < 1:1194877/149‑1 (MQ=18) tGGACTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAAt < 2:2343658/150‑1 (MQ=18) aCTTCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGc < 2:2269664/150‑1 (MQ=18) ttCAGCATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTg > 1:1297896/1‑150 (MQ=17) agcATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTgaga > 2:2532242/3‑150 (MQ=17) cATTTTTTCCACGCAAACG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAAc > 1:4049768/1‑150 (MQ=18) ccacgcaaaCG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGAt > 2:3600926/8‑150 (MQ=18) cgcaaaCG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAg > 1:14744/5‑150 (MQ=18) cgcaaaCG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAg < 1:1017560/146‑1 (MQ=18) cgcaaaCG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAg > 1:4564576/5‑150 (MQ=18) aaaCG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGAtt < 1:2292044/149‑1 (MQ=18) aaCG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTg < 2:434432/150‑1 (MQ=255) aCG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTga < 1:1559794/150‑1 (MQ=255) aCG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTga < 1:2689904/150‑1 (MQ=18) aCG‑GAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTga > 1:1943819/1‑150 (MQ=18) g‑gAATTGACGAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTgaga > 1:1608950/1‑150 (MQ=18) tgacgAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTGAGAAAggg > 1:1114462/5‑150 (MQ=255) gacgAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTGGCGATAAGATTGCGAAAGGGc > 1:3840428/4‑150 (MQ=21) gacgAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTGAGAAAGGGc > 1:2442267/4‑150 (MQ=255) acgAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTGAGAAAGGGCg > 2:421452/3‑150 (MQ=255) gAAAGTAACGTGAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTGAGAAAGGGCGGa > 2:4057160/1‑150 (MQ=255) gAAAGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTGAGAAAGGGCGGa < 1:3123954/150‑1 (MQ=255) aaaGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTGAGAAAGGGCGGaa < 2:1510473/150‑1 (MQ=255) aaGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTGAGAAAGGGCGGaaa > 1:4243174/1‑150 (MQ=255) aaGTAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATTGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTGAGAAAGGGCGGaaa > 1:758909/1‑150 (MQ=255) | AATCGGAAAACGAACTGAGAAACGATTAAACAAACTTGGAATCACTTCTATCAAAGAGCTTGCGAATGCTGACCCTTTTTTGCTGAAGCAAAAATTAGGAATAATTGGACTTCAACATTTTTTCCATGCTAACG‑GAATCGATGAAAGCAACGTAAGAGAAAAATATACTCCAAAATCTACTAGCTTCAGCAATTCTCAAATTCTGCCACGTGACTATCATAAGCAAAGAGAAATCGAACTTGTGATTAAAGAAATGGCTGAGAACTTAGCGATAAGATTGAGAAAGGGCGGAAA > CP043523/1885074‑1885367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |