| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP043523 | 1,861,909 | G→C | intergenic (‑10/+22) | FTN78_chr1909 ← / ← FTN78_chr1910 | Mobile element protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP043523 | 1,861,909 | 0 | G | C | 76.9% | 4558.2 / inf | 2213 | intergenic (‑10/+22) | FTN78_chr1909/FTN78_chr1910 | Mobile element protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (217/293); new base C (806/893); total (1025/1188) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.44e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.45e-01 | |||||||||||
Only 100 of 2281 total aligned reads displayed.
ATCGTAGTATGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACTTTGAGCAAGTTGGTGCTTAGCTTTAAGCGTTTCACTAAAATGCAGTACGCCCCATAGGTAACAAGCGAT > CP043523/1861760‑1862044 | tCGTAGTATGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTgtcgt < 1:1000112/150‑1 (MQ=255) agtaTGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTCTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCctctct < 2:3868876/150‑1 (MQ=255) agtaTGACAAACATTTATTCCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCctctct < 1:4272863/150‑1 (MQ=255) agtaTGACAAACATTTATTCCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCctctct < 2:2869983/150‑1 (MQ=255) gtaTGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTg < 2:1723213/150‑1 (MQ=255) aTGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTc > 1:3359436/1‑150 (MQ=255) aTGACAAACATTTATTCCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTc > 1:539565/1‑150 (MQ=255) aCATTTATTTCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTtc > 1:643437/1‑150 (MQ=255) aCATTTATTTCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTtc > 1:2202064/1‑150 (MQ=255) atttatttCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTTTTTTTTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTtctc > 2:1630947/1‑150 (MQ=37) aTTTATTCCACGATCATATAACAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTtctc < 2:2371534/150‑1 (MQ=255) aTTTATTCCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTtctc > 2:3328454/1‑150 (MQ=255) aTTTATTCCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTtctc < 1:4088162/150‑1 (MQ=255) tttATTCCACGATCATATAACAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCa < 1:2275785/150‑1 (MQ=255) tATTTCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAAt < 2:898556/150‑1 (MQ=255) tATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAAt < 2:382050/150‑1 (MQ=255) aTTCCACGATCATATAACAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAAtt < 2:1389095/150‑1 (MQ=255) tCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAAtttt < 2:4164912/150‑1 (MQ=255) ccACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTa < 1:1714529/150‑1 (MQ=255) cACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTac < 2:726911/150‑1 (MQ=255) aCGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTaca < 1:1076544/150‑1 (MQ=255) gATCATATAACAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACt > 1:3121707/1‑150 (MQ=255) aTCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTa < 2:477786/150‑1 (MQ=255) aTCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTa > 1:1604362/1‑150 (MQ=255) aTCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTa > 1:3809422/1‑150 (MQ=255) tCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTaa < 1:253915/150‑1 (MQ=255) cATATAACAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTaaa > 1:3436461/1‑150 (MQ=255) cATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTaaa > 2:4080220/1‑150 (MQ=255) atatAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTaaaa > 1:940781/1‑150 (MQ=255) tataACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAAt > 2:3132896/1‑150 (MQ=255) tataACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGAAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAAt < 2:1566819/150‑1 (MQ=255) ataACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATa > 2:2098423/1‑150 (MQ=255) taACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAg < 2:2271427/150‑1 (MQ=255) taACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAg > 1:1964231/1‑150 (MQ=255) aCAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGAt > 2:2611810/1‑150 (MQ=255) aCAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGAt > 1:698710/1‑150 (MQ=255) agttCTTGAATTTCACGATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGactt > 2:559517/3‑147 (MQ=255) aaTTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGAttt < 1:2630309/150‑1 (MQ=255) gttcttGAATTTCACGATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGActta < 2:621249/145‑2 (MQ=255) aTTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGAtttt > 2:3952063/1‑150 (MQ=255) tCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGAtttttt < 2:2688325/150‑1 (MQ=255) ttGAATTTCACGATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGActtatcag > 2:3542901/2‑145 (MQ=255) cTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTgg > 2:148045/1‑150 (MQ=255) cTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTgg < 1:874402/150‑1 (MQ=255) gAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAGTAATGAAGTCTTTTTTGAATTGTTTGCCTGTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGaa < 2:4454967/150‑1 (MQ=255) gAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGaa > 2:362438/1‑150 (MQ=255) gAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGaa > 2:1839415/1‑150 (MQ=255) gAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGaa < 1:320617/150‑1 (MQ=255) aCTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGaaaa < 2:2797078/150‑1 (MQ=255) aCTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGaaaa < 2:4261929/150‑1 (MQ=255) tCACGATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACtt > 1:818711/1‑150 (MQ=255) tCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACtt > 1:4540984/1‑150 (MQ=255) tCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGTTTTTTTGGAATACtt < 2:2518218/150‑1 (MQ=255) tCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACtt < 1:1387559/150‑1 (MQ=255) tCACGATAGCTCAGATTGGAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCCTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCACTTTTACACTAAAATAGTTTTTTTGGAATACtt < 2:4378126/150‑1 (MQ=21) cACGATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACttt > 1:3764719/1‑150 (MQ=255) cACGATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACttt < 1:4389023/150‑1 (MQ=255) cACGATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACttt < 1:2152175/150‑1 (MQ=255) cACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACttt < 1:1162720/150‑1 (MQ=255) cACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACttt < 1:2745898/150‑1 (MQ=255) cACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGTTTTTTTGGAATACttt > 2:1158982/1‑150 (MQ=255) cACGATAGCTTAGATTGTAACGCAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGATTTTTTGGAAAACttt < 2:3061644/150‑1 (MQ=16) aCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTg < 1:1878500/150‑1 (MQ=255) aCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTg < 2:2191571/150‑1 (MQ=255) aCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTg < 1:3984000/150‑1 (MQ=255) cGATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGc > 1:1305810/1‑150 (MQ=255) cGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGc < 1:1439762/150‑1 (MQ=255) aTAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCaa > 1:2351366/1‑150 (MQ=255) tAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGCAAc > 2:2015915/1‑150 (MQ=255) tAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAAc < 1:1254568/150‑1 (MQ=255) aGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGCAACa < 1:3575445/150‑1 (MQ=255) gCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGCAACAg < 2:1101039/150‑1 (MQ=255) cTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGa < 2:3484335/150‑1 (MQ=255) ttAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGaa < 1:2900446/150‑1 (MQ=255) tAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGCAACAGAAc < 1:280168/150‑1 (MQ=255) tAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAc > 1:4214154/1‑150 (MQ=255) gATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCa < 1:3044727/150‑1 (MQ=255) aTTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAACTAGATTTTTTGGAAAACTTTGCAACAGAACCAc > 2:245374/1‑150 (MQ=255) aTTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAccta < 1:3681202/150‑3 (MQ=255) ttGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGCAACAGAAccgtt < 1:781388/150‑4 (MQ=255) gTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGCAACAGAACCaaaat < 1:1795433/150‑5 (MQ=255) tAACGTATGTAGTAACCAACAGCGACAATAATGACGTTTTTTTTTAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAGAATAGATTTTTTGGAAAACTTTGCATCAGAACCACgtag > 2:3430268‑M2/1‑146 (MQ=255) tAACGCAGTTAGTAACCAGCAGCGACAATAATGACTTATTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTATTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGCACACTTTCCCACAGAAcctataag < 2:2959686/150‑7 (MQ=17) tAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAcctataag < 1:3485840/150‑7 (MQ=255) tAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAcctataag < 1:2433188/150‑7 (MQ=255) aaCGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTTTATTGTTTTCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAcctataagc > 2:1935901/1‑143 (MQ=18) aaCGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAcctataagc < 1:4608318/150‑8 (MQ=255) aaCGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAcctataagc > 1:3892060/1‑143 (MQ=255) aGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgat < 2:1015144‑M2/150‑11 (MQ=255) aGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgat < 2:1333313‑M2/150‑11 (MQ=255) ccAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgact < 1:2988919‑M2/150‑20 (MQ=255) aaCAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGTAAAACTTTGCAACAGAACCACgtagcctgattcactgactaa < 2:4568922‑M2/150‑22 (MQ=255) tGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttac > 1:2060252‑M2/1‑115 (MQ=255) ttttGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagactgattcactgactaaagcatgccatttacatccataga < 2:3733212‑M2/150‑45 (MQ=255) gTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTTAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttacatccatagaagtactgtc < 2:812219‑M2/150‑54 (MQ=255) tGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttacatccatagaagtactgtccct > 1:3283718‑M2/1‑94 (MQ=255) tGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATCTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttacatccatagaagtactgtccct < 2:1279160‑M2/150‑57 (MQ=255) ttACAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTCAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttacatccatagaagtactgtccctttgta > 2:325531‑M2/1‑89 (MQ=255) tAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttacatccatagaagtactgtccctttgtag > 1:1525433‑M2/1‑88 (MQ=255) ttCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttacatccatagaagtactgtccctttgtagcattgtag < 1:446046‑M2/150‑71 (MQ=255) | ATCGTAGTATGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACTTTGAGCAAGTTGGTGCTTAGCTTTAAGCGTTTCACTAAAATGCAGTACGCCCCATAGGTAACAAGCGAT > CP043523/1861760‑1862044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |