New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP043523	1 =	0 (0.000)	6958 (13.090)	93/294	17.3	100%	intergenic (–/+2)	–/FTN78_chr0001	–/Mobile element protein
	?	CP043523	= 2416272	0 (0.000)					intergenic (+231/–)	FTN78_chr2511/–	tRNA‑Leu/–
Rejected: Coverage evenness skew score above cutoff.

AGAGTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATC‑‑‑‑‑‑‑  >  CP043523/2416125‑2416272                                                                                                                                                    |        agagTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATc         >  1:1676488/1‑148 (MQ=255) agagTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATc         <  2:1150382/148‑1 (MQ=255) agagTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATc         >  1:612323/1‑148 (MQ=255) agagTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATc         >  1:610707/1‑148 (MQ=255)  gagTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATcc        <  1:2118345/148‑2 (MQ=255)  gagTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATcc        >  1:4541791/1‑147 (MQ=255)   agTTTTGCTATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATcca       <  2:1663487/148‑3 (MQ=255)   agTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATcca       >  2:4501636/1‑146 (MQ=255)   agTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATcca       <  2:3437169/148‑3 (MQ=255)   agTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATcca       <  2:3356977/148‑3 (MQ=255)   agTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATcca       <  2:1581685/148‑3 (MQ=255)    gTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaa      >  2:3089784/1‑145 (MQ=255)     ttttGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaat     >  1:1227905/1‑144 (MQ=255)     ttttGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaat     >  2:2384267/1‑144 (MQ=255)     ttttGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaat     <  1:2015965/148‑5 (MQ=255)      tttGATTTCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaata    <  1:3914883/148‑6 (MQ=255)      tttGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaata    <  1:107078/148‑6 (MQ=255)      tttGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaata    <  2:4294463/148‑6 (MQ=255)       ttGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATATATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaatac   >  2:3808342/1‑142 (MQ=255)       ttGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaatac   <  1:3481885/148‑7 (MQ=255)       ttGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaatac   <  1:1375196/148‑7 (MQ=255)        tGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaatact  >  1:3902503/1‑141 (MQ=255)        tGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaatact  <  1:3193313/148‑8 (MQ=255)        tGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaatact  >  2:325935/1‑141 (MQ=255)        tGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaatact  >  2:4117501/1‑141 (MQ=255)        tGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaatact  >  2:4117529/1‑141 (MQ=255)        tGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaatact  >  1:720068/1‑141 (MQ=255)        tGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaat     <  1:4132563/145‑5 (MQ=255)        tGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaat     >  2:4132563/1‑141 (MQ=255)        tGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaat     >  2:4132607/1‑141 (MQ=255)        tGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATccaat     <  1:4132607/145‑5 (MQ=255)                                                                                                                                                    |        AGAGTTTTGATATCAAATCAAGTGTATTCAGGTCACTTGATTTTTTTATAAATTGTTATTTTCGCAAATTGCAAGTCCAAGTTAGCCAGCCAAGCTCATCTCATATGAACTCTTATAGTTGAACATTTTTCTTGGATAATGGTTCATC‑‑‑‑‑‑‑  >  CP043523/2416125‑2416272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.