Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP043523 | 1,861,227 | 0 | G | T | 72.3% | 1557.7 / inf | 1043 | P225T (CCA→ACA) | FTN78_chr1909 | Mobile element protein |
Reads supporting (aligned to +/- strand): ref base G (48/239); new base T (79/669); total (128/915) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 8.16e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.29e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 1054 total aligned reads displayed.
AAAATAATTTGACTGGTTCTGTTGCAAAGTTTGAAAATCAAACGCACCCGCTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATAAAATTTATTCCG > CP043523/1861151‑1861374 | ataaatctttGACTGTTTCTGTTGCGAAGTTTGAAAATCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCtttt < 2:2210554/141‑1 (MQ=255) ctttGACTGTTTCTGTTGCGAAGTTTGAAAATCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTtatata < 1:2107261/147‑1 (MQ=255) ctttGACTGTTTCTGTTGCGAAGTTTGAAAATCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTtatata < 2:499082/147‑1 (MQ=255) tttGACTGTTTCTGTTGCGAAGTTTGAAAATCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTatatat < 1:3681944/148‑1 (MQ=255) tagaaacggTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTatatat < 1:812920/141‑1 (MQ=255) tagaaacggTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTatatat < 1:620165/141‑1 (MQ=255) cattgatGGTTCTATTGCGAAGTTTGAAAATCAAACGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTatatat < 1:1801121/142‑1 (MQ=38) tatttcggTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATAtt < 1:4585852/142‑1 (MQ=39) ttggcggTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTc < 1:567124/143‑1 (MQ=39) ttggcggTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTc < 1:3195595/143‑1 (MQ=39) ttgatGGTTCTATTGCGAAGTTTGAAAATCAAACGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTc < 1:3835524/144‑1 (MQ=38) tgatGGTTCTATTGCGAAGTTTGAAAATCAAACGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTcc < 1:2258962/145‑1 (MQ=38) gACTGTTTCTGTTGCGAAGTTTGAAAATCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTcc < 2:4234293/148‑1 (MQ=255) gACTGTTTCTGTTGCGAAGTTTGAAAATCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTcc < 2:2487617/148‑1 (MQ=255) gACTGTTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTcc < 1:1466478/148‑1 (MQ=39) tttGGTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCt < 2:83441/146‑1 (MQ=39) gcggTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTc < 1:338341/146‑1 (MQ=39) ggTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGa < 2:1804668/148‑1 (MQ=39) ggTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGTTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTGTATATTCCTCGa < 2:3302261/148‑1 (MQ=38) gTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGaa < 2:2012022/148‑1 (MQ=39) gTTCTGTTGCGAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGaa < 1:2385692/148‑1 (MQ=255) ttCTGTTGCGAAGTTTGAAAATCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGaat < 1:2819690/148‑2 (MQ=38) tCTGTTGCGAAGTTTGAAAATCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGaatg < 2:762354/148‑3 (MQ=38) cTGTTGCGAAGTTTGAAAATCAAACGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAggg < 1:3136240/148‑1 (MQ=39) cTGTTGCGAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGaatga < 1:4480972/148‑4 (MQ=38) tGTTGCGAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGaatgat < 1:1623746/148‑5 (MQ=38) ttGCGAAGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGtct < 2:628427/148‑1 (MQ=38) ttGCGAACTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGtct < 1:1268296/148‑1 (MQ=38) aaGTTTGAAAATTAAACGCGCCCTCTCTGAACTCCGAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATg < 2:1258129/148‑1 (MQ=38) aaGTTTGAAAATCAAACGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATg < 2:3741056/148‑1 (MQ=255) aaGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATg < 1:2715679/148‑1 (MQ=38) aaGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATg < 2:1074257/148‑1 (MQ=38) aGTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGc < 1:4375401/148‑1 (MQ=255) gTTTGAAAATCAAACGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGcc < 1:2750669/148‑1 (MQ=255) gTTTGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGTTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTGTATATTCCTCGAATTGTTTCCATGcc < 1:4061253/148‑1 (MQ=37) tttGAAAATCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGACAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGTCTCCATGccc < 2:3938710/148‑1 (MQ=37) tttGAAAATCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGTCTCCATGccc < 1:243372/148‑1 (MQ=37) tttGAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGATCTCCATGccc < 1:1881979/148‑1 (MQ=38) tGAAAATCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGTCTCCATGCCCtt < 1:204719/148‑1 (MQ=37) tGAAAATCAAACGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCtt < 2:3338469/148‑1 (MQ=255) gAAAATCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTa < 1:1324892/148‑1 (MQ=255) aaaaTTAACCGCGCCCTCTCTGCACTCCGAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTaa < 2:4496159/148‑1 (MQ=37) aaaaTTAAACGCGCCCTCTCTGAACTCCGAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTaa < 2:4357003/148‑1 (MQ=37) aaTCAAACGTGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGTCTCCATGCCCTTaagc < 2:4056129/148‑3 (MQ=37) aTCAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGATCTCCATGCCCTTAATCg < 1:3963023/148‑1 (MQ=38) cAAACGCGCCCTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGATCTCCATGCCCTTAATCGTg < 1:767180/148‑1 (MQ=37) aaaCGCGCCCTTTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTgg < 2:3061430/148‑1 (MQ=255) gtgccctctctGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGTCTCCATGCCCTTAAGCGTGGAaga < 2:3529897/141‑1 (MQ=37) cgccctttctGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAagag < 1:4131330/141‑1 (MQ=255) cgcccTCTCTGAACTCCAAATATCTTAGGCTGTGATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAagag < 1:174099/146‑1 (MQ=255) gccctttctGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAgg < 2:2605582/142‑1 (MQ=255) gccctctctGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGTCTCCATGCCCTTAAGCGTGGAAGAgg < 1:1204618/143‑1 (MQ=37) gccctctctGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAgg < 2:2780275/143‑1 (MQ=38) gcccTCTCTGAACTCCAAATATCTTAGGTTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTggttgagg < 2:2128158/147‑7 (MQ=21) ccctctctGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGTCTCCATGCCCTTAAGCGTGGAAGAggt < 2:3983768/144‑2 (MQ=37) ccctctctGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGTCTCCATGCCCTTAAGCGTGGAAGAggt < 1:1400363/144‑2 (MQ=37) cccTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGTCTCCATGCCCTTAAGCGTGGAAGAggt < 2:190364/148‑2 (MQ=37) cccTCTCTGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGATCTCCATGCCCTTAATCGTGGAAAAGGc < 2:2337174/148‑1 (MQ=37) cctttctGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCt < 2:3038594/144‑1 (MQ=255) ctctctGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGTCTCCATGCCCTTAAGCGTGGAAGAggttt < 1:1538654/146‑4 (MQ=37) ctctctGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTg < 1:1137443/146‑1 (MQ=255) ctctGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGATCTCCATGCCCTTAATCGTGGAAAAGGCTGTa < 1:3535755/148‑1 (MQ=38) ctctGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTa < 1:3026119/148‑1 (MQ=255) ctctGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTa < 2:3412916/148‑1 (MQ=255) tctGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACATCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGGTCTCCATGCCCTTAAGCGTGGAAGAggtttgat < 1:987688/148‑7 (MQ=37) tGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACgg < 1:3741606/148‑1 (MQ=255) tGAACTCCAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACgg < 1:363177/148‑1 (MQ=255) aaCTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGgag < 2:2891167/148‑1 (MQ=255) aCTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGgaga > 1:1064617/1‑148 (MQ=255) tCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACt < 2:3609447/148‑1 (MQ=255) ccgaaTATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACtt > 1:1835897/4‑148 (MQ=255) ccAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACtt < 2:4569519/148‑1 (MQ=255) cAAATATCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGCCttt > 1:2491617/1‑148 (MQ=255) gaaTATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTg > 1:690304/2‑148 (MQ=255) aaaTATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTg > 1:444428/1‑148 (MQ=255) aaTATCTTAGGTTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGa < 1:3295165/148‑1 (MQ=17) aaTATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGa < 1:4206387/148‑1 (MQ=255) aaTATCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGa < 2:2392119/148‑1 (MQ=255) aaTATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGa > 1:2953965/1‑148 (MQ=255) atatCTTAGGTTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGAt > 1:1970833/1‑148 (MQ=17) atatCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGATCTCCATGCCCTTAATCGTGGAAAAGGCTGTACGGAGACTTTGAt > 1:286142/1‑148 (MQ=255) atatCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGATCTCCATGCCCTTAATCGTGGAAAAGGCTGTACGGAGACTTTGAt < 2:3191812/148‑1 (MQ=38) atatCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGAt > 1:2555555/1‑148 (MQ=255) tatCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATa < 2:3891183/148‑1 (MQ=255) tatCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATa > 1:1694692/1‑148 (MQ=255) atCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGATCTCCATGCCCTTAATCGTGGAAAAGGCTGTACGGAGACTTTGATaa > 1:4307350/1‑148 (MQ=37) atCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATaa < 1:2645872/148‑1 (MQ=255) atCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATaa < 1:229858/148‑1 (MQ=255) tCTTAGGCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATaaa < 2:1508195/148‑1 (MQ=255) tCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATaaa < 2:1692424/148‑1 (MQ=255) tCTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATaaa > 1:542964/1‑148 (MQ=255) cTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATaaaa > 1:3439520/1‑148 (MQ=255) cTTAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATaaaa < 1:390092/148‑1 (MQ=255) ttAGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATAAAAt < 2:1386898/148‑1 (MQ=255) ttAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATAAAAt > 1:892261/1‑148 (MQ=255) aGGCTGTTATTCCCATTAATACCTTGATTTAAGTAGACACTGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATAAAAttt > 1:3260596/1‑148 (MQ=255) ggCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATAAAATTTa > 1:4668516/1‑148 (MQ=255) gCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAATGATCTCCATGCCCTTAATCGTGGAAAAGGCTGTACGGAGACTTTGATAAAAGTTac > 1:1010942/1‑147 (MQ=37) gCTGTTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATAAAATTTAt < 1:2165391/148‑1 (MQ=255) ggTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGCGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGCCTTTGATAAAATTTATTcc > 2:1608528/1‑148 (MQ=255) | AAAATAATTTGACTGGTTCTGTTGCAAAGTTTGAAAATCAAACGCACCCGCTCTGAACTCCAAATATCTTAGGCTGGTATTCCCATTAATACCTTGATTTCAGTAGACACCGAAAAGCCGAAGAGCGTTCCATTTCTTCGGTTCTTTTTATATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGAAGAGGCTGTACGGAGACTTTGATAAAATTTATTCCG > CP043523/1861151‑1861374 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |