Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0435231,861,9090GC73.3% 3990.5 / inf 2152intergenic (‑10/+22)FTN78_chr1909/FTN78_chr1910Mobile element protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (295/278);  new base C (707/866);  total (1006/1146)
Fisher's exact test for biased strand distribution p-value = 8.24e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.28e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 2254 total aligned reads displayed.

CGTAGTATGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACTTTGAGCAAGTTGGTGCTTAGCTTTAAGCGTTTCACTAAAATGCAGTACGCCCCATAGGTAACAAGCGATAGCTAAGC  >  CP043523/1861762‑1862052
                                                                                                                                                   |                                                                                                                                               
  tagtaTGACAAACATTTATTTCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTgtcctc                                                                                                                                               >  2:4570353/1‑148 (MQ=255)
  tagtaTGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTgtcgtc                                                                                                                                               <  1:2527506/148‑1 (MQ=255)
  tagtaTGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCGgtcctc                                                                                                                                               >  2:798187/1‑148 (MQ=255)
   agtaTGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGtct                                                                                                                                              >  2:4080334/1‑148 (MQ=255)
   agtaTGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCctct                                                                                                                                              <  1:1603463/148‑1 (MQ=255)
    gtaTGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGtctc                                                                                                                                             >  1:800235/1‑148 (MQ=255)
     taTGACAAACATTTATTCCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTctct                                                                                                                                            <  2:2111512/148‑1 (MQ=255)
       tGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGt                                                                                                                                          <  2:3885030/148‑1 (MQ=255)
        gACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTc                                                                                                                                         <  1:719309/148‑1 (MQ=255)
        gACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTc                                                                                                                                         <  1:2017356/148‑1 (MQ=255)
         aCAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCt                                                                                                                                        >  2:647952/1‑148 (MQ=255)
         aCAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCt                                                                                                                                        >  2:3979619/1‑148 (MQ=255)
            aaCATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCtttt                                                                                                                                     >  2:2824489/1‑148 (MQ=255)
              cATTTATTTCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCtttttt                                                                                                                                   <  1:3438489/148‑1 (MQ=255)
               aTTTATTCCACGATCATATAACAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTtc                                                                                                                                  <  1:2924002/148‑1 (MQ=255)
               aTTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTtc                                                                                                                                  <  2:4265520/148‑1 (MQ=255)
                tttATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTtct                                                                                                                                 <  2:527399/148‑1 (MQ=255)
                tttATTCCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTtct                                                                                                                                 <  2:4190115/148‑1 (MQ=255)
                tttATTCCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTtct                                                                                                                                 <  2:1127412/148‑1 (MQ=255)
                 ttATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTtctc                                                                                                                                <  1:3621835/148‑1 (MQ=255)
                  tATTTCACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCa                                                                                                                               <  1:1504643/148‑1 (MQ=255)
                  tATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCa                                                                                                                               >  1:2993965/1‑148 (MQ=255)
                   aTTCCACGATCATATAACAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCaa                                                                                                                              <  2:1650777/148‑1 (MQ=255)
                      tcACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAAttt                                                                                                                           >  1:4389704/2‑148 (MQ=255)
                      ccACGATCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAAttt                                                                                                                           <  2:2973887/148‑1 (MQ=255)
                       cACGATCATATAACAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGTTTTTTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAAtttt                                                                                                                          >  2:3596573/1‑148 (MQ=37)
                       cACGATCATATAACAATTCCTGAACTTCACGATAGAAAAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAAtttt                                                                                                                          >  2:122950/1‑148 (MQ=255)
                           aTCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTacac                                                                                                                      <  1:510796/148‑1 (MQ=255)
                            tCATATAACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACt                                                                                                                     <  2:3081618/148‑1 (MQ=255)
                             cATATAACAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTa                                                                                                                    <  1:1085084/148‑1 (MQ=255)
                             cATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTa                                                                                                                    <  1:3809752/148‑1 (MQ=255)
                              atatAACAATTCCTGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTaa                                                                                                                   >  1:1242930/1‑148 (MQ=255)
                              atatAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTGTCTCAATTTTACACTaa                                                                                                                   >  1:4487614/1‑148 (MQ=255)
                                ataACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTaaaa                                                                                                                 <  2:4710651/148‑1 (MQ=255)
                                ataACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTaaaa                                                                                                                 >  2:71800/1‑148 (MQ=255)
                                 taACAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAAt                                                                                                                <  2:4466233/148‑1 (MQ=255)
                                   aCAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAg                                                                                                              >  2:4665697/1‑148 (MQ=255)
                                   aCAATTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAg                                                                                                              >  2:3456688/1‑148 (MQ=255)
                                     aaTTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGAt                                                                                                            >  2:2363602/1‑148 (MQ=255)
                                     aaTTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGAt                                                                                                            >  1:4566167/1‑148 (MQ=255)
                                     aaTTACTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAgtt                                                                                                            >  1:1414593/1‑146 (MQ=255)
                                      gttcttGAATTTCACGATAGCTTAGATTGTAACGCAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGact                                                                                                           <  2:3182276/143‑3 (MQ=255)
                                      aTTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGAtt                                                                                                           >  2:1297978/1‑148 (MQ=255)
                                        tCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGAtttt                                                                                                         >  1:1921057/1‑148 (MQ=255)
                                          ttGAATTTCACGATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGacttatc                                                                                                       <  1:2829592/147‑7 (MQ=255)
                                          cTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGTtttttt                                                                                                       >  2:324720/1‑148 (MQ=255)
                                           tGAACTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTg                                                                                                      >  2:4361233/1‑148 (MQ=255)
                                            gAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTgg                                                                                                     >  2:2189689/1‑148 (MQ=255)
                                            gAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTgg                                                                                                     >  1:1321471/1‑148 (MQ=255)
                                             aaCTTCCCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGa                                                                                                    <  1:2675195/148‑1 (MQ=255)
                                             aaCTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGa                                                                                                    <  1:2740070/148‑1 (MQ=255)
                                              aCTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGaa                                                                                                   <  2:135867/148‑1 (MQ=255)
                                               cTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGaaa                                                                                                  <  2:2028719/148‑1 (MQ=255)
                                                ttCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGaaaa                                                                                                 >  2:1946875/1‑148 (MQ=255)
                                                ttCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGTTTTTTTGGaata                                                                                                 <  1:4055284/148‑3 (MQ=255)
                                                 tCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAAc                                                                                                <  1:2108791/148‑1 (MQ=255)
                                                 tCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAAc                                                                                                <  2:906369/148‑1 (MQ=255)
                                                 tCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAAc                                                                                                <  1:620959/148‑1 (MQ=255)
                                                  cccGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACt                                                                                               <  2:2561975/146‑1 (MQ=255)
                                                  cACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACt                                                                                               <  2:1779071/148‑1 (MQ=255)
                                                  cACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACt                                                                                               <  1:4267295/148‑1 (MQ=255)
                                                  cACGATAGCTGAGATTGTACCGCAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACt                                                                                               <  1:4677594/148‑1 (MQ=255)
                                                   aCGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACtt                                                                                              >  2:1591164/1‑148 (MQ=255)
                                                    cGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGTTTTTTTGGAATACttt                                                                                             <  1:3958732/148‑1 (MQ=255)
                                                     gATAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTg                                                                                            >  1:1154651/1‑148 (MQ=255)
                                                      aTAGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGc                                                                                           >  2:2281814/1‑148 (MQ=18)
                                                      aTAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGTTTTTTTGGAATACTTTGc                                                                                           <  1:4313572/148‑1 (MQ=255)
                                                       tAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCa                                                                                          <  1:1006026/148‑1 (MQ=255)
                                                       tAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCa                                                                                          >  1:2384550/1‑148 (MQ=255)
                                                        aGCTTAGATTGTAACGTAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGTaa                                                                                         >  1:2196328/1‑148 (MQ=255)
                                                         gCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAAc                                                                                        >  2:3516651/1‑148 (MQ=255)
                                                          cTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACa                                                                                       >  1:900288/1‑148 (MQ=255)
                                                          cTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGTTTTTTTGTAATACTTTGCAACa                                                                                       >  2:2746215/1‑148 (MQ=255)
                                                          cTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACa                                                                                       >  1:2289292/1‑148 (MQ=255)
                                                            tAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGa                                                                                     <  2:1462034/148‑1 (MQ=255)
                                                             aGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGTTTTTTTGGAATACTTTGCAACAGaa                                                                                    <  2:2913168/148‑1 (MQ=255)
                                                               aTTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAcc                                                                                  <  2:1528254/148‑1 (MQ=255)
                                                               aTTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAcc                                                                                  <  1:4608557/148‑1 (MQ=255)
                                                                 tGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAccta                                                                                >  1:3910219/1‑146 (MQ=255)
                                                                 tGTAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAccta                                                                                >  1:3715030/1‑146 (MQ=255)
                                                                  gTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAccgac                                                                               <  2:2668519/148‑4 (MQ=255)
                                                                  gTAACGCAGATAATAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGCAACAGAAccgtt                                                                               <  2:3746100/148‑4 (MQ=255)
                                                                   tAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgt                                                                              >  2:3676735‑M2/1‑146 (MQ=255)
                                                                   tAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgt                                                                              >  1:3377821‑M2/1‑146 (MQ=255)
                                                                   tAACGCAGGTAGTAACCAACAGCGACAATAATGAAATCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAAcctact                                                                              >  2:3343009/1‑144 (MQ=18)
                                                                   tAACGCAGGTAGTAACCAACAGCGACAATAATCACATCTTTTTGAAATTGTTTACCTTTAAAATAGTTCATTGATATATCCTCGCTGTCATTTTTATTCATTTTACACTAAAATAGACTTATCAGAAAACTTTGCAACAGAAccgttt                                                                              >  2:3820919/1‑144 (MQ=255)
                                                                    aaCGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgta                                                                             <  2:4121393‑M2/148‑4 (MQ=255)
                                                                              gtaACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattca                                                                   <  1:3200950‑M2/148‑14 (MQ=255)
                                                                                    aaCAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgact                                                             >  2:1036965‑M2/1‑129 (MQ=255)
                                                                                     aCAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAGCCACgtagcctgattcactgacta                                                            <  1:2618838‑M2/148‑21 (MQ=255)
                                                                                                aatGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacat                                                 <  1:4164415‑M2/148‑32 (MQ=255)
                                                                                                  tGACGTCTTTTTTTTTTTTTTTTCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAATATAACCACgtagcctgattcactgactaaagcatgacattt                                               <  2:2477444‑M2/148‑34 (MQ=255)
                                                                                                   gACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacattta                                              <  1:1770319‑M2/148‑35 (MQ=255)
                                                                                                     cGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATCTTTTGGAAAACTTTGCAACAGACCCACgtagcccgattcactgactaaagcatgacatttaca                                            <  1:1873912‑M2/148‑37 (MQ=255)
                                                                                                             ttGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttacatccataga                                    >  1:2464968‑M2/1‑104 (MQ=255)
                                                                                                                         ccTTTAAAATGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTTTTATATTTTGCAACAGAACCACgtagccttattcactgactaaagcattaaatttacatccatagaattactgtatct                        <  2:1877575‑M2/148‑57 (MQ=255)
                                                                                                                                 aTGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttacatccatagaagtactgtccctttgtagca                <  1:3493950‑M2/148‑65 (MQ=255)
                                                                                                                                  tGATTCATTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttacatccatagaagtactgtccctttgtagcat               >  1:309249‑M2/1‑83 (MQ=255)
                                                                                                                                        aTTACTCTGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttacatccatagaagtactgtcactttgtagcattgtagc         >  1:3264922‑M2/1‑77 (MQ=255)
                                                                                                                                               tGTCCTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACgtagcctgattcactgactaaagcatgacatttacatccatagaagtactgtccctttgtagcattgtagccaatatt  <  1:1685278‑M2/148‑79 (MQ=255)
                                                                                                                                                   |                                                                                                                                               
CGTAGTATGACAAACATTTATTCCACGATCATATAACAATTCCTGAACTTCACGATAGCTTAGATTGTAACGCAGGTAGTAACCAACAGCGACAATAATGACGTCTTTTTTGAATTGTTTGCCTTTAAAATGATTCATTACTCTGTCGTCTCTGTCTTTTTTCTCAATTTTACACTAAAATAGATTTTTTGGAAAACTTTGCAACAGAACCACTTTGAGCAAGTTGGTGCTTAGCTTTAAGCGTTTCACTAAAATGCAGTACGCCCCATAGGTAACAAGCGATAGCTAAGC  >  CP043523/1861762‑1862052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑