Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0435231,894,9940CT63.5% 780.6 / inf 1767L38L (CTC→CTT) FTN78_chr1944Mobile element protein
Reads supporting (aligned to +/- strand):  ref base C (309/336);  new base T (528/593);  total (838/929)
Fisher's exact test for biased strand distribution p-value = 7.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 1779 total aligned reads displayed.

CACTAAGCATTAGAAAGCGCACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTC  >  CP043523/1894852‑1895141
                                                                                                                                              |                                                                                                                                                   
                gctcACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGtt                                                                                                                                <  2:376328/145‑1 (MQ=11)
                gctcACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGtt                                                                                                                                <  1:1999420/145‑1 (MQ=14)
                gcgcACGACTTATATGACTTATAATAGCACACTCCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGtt                                                                                                                                >  1:2260126/1‑148 (MQ=9)
                   cACGACCTATATGACTTATAATAGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGtgatt                                                                                                                             <  2:2598996/148‑5 (MQ=1)
                    aCGACCTATATGACTTATAATAGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGtgatta                                                                                                                            <  1:2890033/148‑6 (MQ=1)
                     cGACTTATATGACTTATAATTGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGC‑TAGTTaatttc                                                                                                                          >  2:51455/1‑143 (MQ=1)
                      gACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGtgattact                                                                                                                          >  2:4669333/1‑141 (MQ=2)
                       aCTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCtt                                                                                                                         <  1:993994/148‑1 (MQ=11)
                         ttATATGACTTATAATAGCACCCTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGt                                                                                                                       <  2:1910953/148‑1 (MQ=12)
                          tataTGACTTATAATAGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAAAGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTACATCTTGCAACATCTGACTGTTTAGTGATTACTTGtt                                                                                                                      >  1:1570166/1‑148 (MQ=11)
                          tataTGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGtt                                                                                                                      >  1:2429845/1‑148 (MQ=11)
                          tataTGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGtt                                                                                                                      <  1:3558743/148‑1 (MQ=11)
                            tatGACTTATAATAGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTAc                                                                                                                    <  1:3028752/148‑1 (MQ=11)
                            tatGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTTATCGCTTGTTAc                                                                                                                    >  2:2103373/1‑148 (MQ=32)
                             atGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTAcc                                                                                                                   <  1:629442/148‑1 (MQ=11)
                                aCTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGGTTGCTTAGTTATCGCTTGTTACCtct                                                                                                                >  1:1527018/1‑146 (MQ=9)
                                 cTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATg                                                                                                               <  2:3415039/148‑1 (MQ=11)
                                 cTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATg                                                                                                               >  1:3819069/1‑148 (MQ=11)
                                 cTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATg                                                                                                               >  1:4681979/1‑148 (MQ=11)
                                 cTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATg                                                                                                               <  1:4101340/148‑1 (MQ=11)
                                  ttATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATgg                                                                                                              <  1:132557/148‑1 (MQ=255)
                                     taataGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGc                                                                                                           >  2:3542365/1‑148 (MQ=255)
                                     taataGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGc                                                                                                           <  2:1203749/148‑1 (MQ=11)
                                      aataGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCg                                                                                                          <  2:3070036/148‑1 (MQ=11)
                                        taGCACGCTTACAAAAGTTTTTGTTTATTTACTGACAAGCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTTATCGCTTGTTACCTATGGGGCGTa                                                                                                        <  2:429356/148‑1 (MQ=255)
                                        taGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTa                                                                                                        >  1:2781594/1‑148 (MQ=11)
                                        taGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTa                                                                                                        >  2:81703/1‑148 (MQ=11)
                                         aGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTAc                                                                                                       <  1:3935988/148‑1 (MQ=11)
                                          gCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACt                                                                                                      >  1:722159/1‑148 (MQ=11)
                                                ttacAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCAttt                                                                                                <  2:4467727/145‑1 (MQ=11)
                                                ttCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCAttt                                                                                                >  1:1250064/1‑148 (MQ=255)
                                                  ccAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTa                                                                                              <  2:3007992/148‑1 (MQ=11)
                                                   cAAAAGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAg                                                                                             <  2:1581237/148‑1 (MQ=11)
                                                    aaaaGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGt                                                                                            >  1:3087273/1‑148 (MQ=11)
                                                     aaaGTTTTTGTTTATTTACTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTg                                                                                           <  2:168178/148‑1 (MQ=11)
                                                      aaGTTTTTGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGa                                                                                          <  2:4127426/148‑1 (MQ=11)
                                                        gTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGaaa                                                                                        >  2:2694890/1‑148 (MQ=255)
                                                            ttGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAacgct                                                                                    >  1:39807/1‑145 (MQ=11)
                                                            ttGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAacgct                                                                                    >  2:4396470/1‑145 (MQ=1)
                                                            ttGTTTATTTACTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACt                                                                                    >  1:373864/1‑148 (MQ=11)
                                                               tttatttaCTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTaa                                                                                 >  1:1408741/1‑148 (MQ=11)
                                                                  atttaCTGACAAGCATTGAAGCGATTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGc                                                                              >  2:2016500/1‑148 (MQ=11)
                                                                   tttaCTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGca                                                                             >  2:1807019/1‑147 (MQ=11)
                                                                       cTGACAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTaaagcaaagc                                                                         <  2:93694/148‑1 (MQ=11)
                                                                          aCAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCAcc                                                                      >  2:2833831/1‑148 (MQ=11)
                                                                           cAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCa                                                                     >  2:4188575/1‑148 (MQ=11)
                                                                           cAACCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCa                                                                     >  2:329917/1‑148 (MQ=11)
                                                                            aaCCATTGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCaa                                                                    <  2:3645932/148‑1 (MQ=11)
                                                                              ccATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAAtt                                                                  >  1:3383562/1‑148 (MQ=11)
                                                                                aTTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTgg                                                                <  1:1082818/148‑1 (MQ=11)
                                                                                  tGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCt                                                              <  2:4500818/148‑1 (MQ=14)
                                                                                  tGAGACACTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCt                                                              >  2:10968/1‑148 (MQ=14)
                                                                                   gagaCGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTc                                                             <  1:163789/148‑1 (MQ=11)
                                                                                   gagaCGCTTTATCAAACGAGGGTTCCCCTTGAGGTTCAAAACCGATAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTc                                                             <  2:1361906/148‑1 (MQ=11)
                                                                                   gaagcgatttATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTc                                                             >  2:2294672/8‑148 (MQ=11)
                                                                                    aagcgatttATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCa                                                            <  1:2512065/142‑1 (MQ=14)
                                                                                     gacacTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCaa                                                           <  2:4076100/144‑1 (MQ=14)
                                                                                     gaCGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCaa                                                           <  2:3160513/148‑1 (MQ=11)
                                                                                     gaCGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCaa                                                           >  2:2505912/1‑148 (MQ=11)
                                                                                      gcgatttATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCaaa                                                          >  1:3271420/5‑148 (MQ=14)
                                                                                       cGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAg                                                         <  2:3934341/148‑1 (MQ=11)
                                                                                       cGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAg                                                         <  1:4443779/148‑1 (MQ=11)
                                                                                         cTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGtt                                                       >  1:548835/1‑148 (MQ=11)
                                                                                          tttATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGttt                                                      >  1:3631251/1‑148 (MQ=11)
                                                                                           ttATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTa                                                     >  1:46063/1‑148 (MQ=11)
                                                                                            tATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTat                                                    <  1:2191971/148‑1 (MQ=11)
                                                                                            tATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTat                                                    <  1:2964857/148‑1 (MQ=11)
                                                                                            tATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTat                                                    >  2:606189/1‑148 (MQ=14)
                                                                                             aTCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTatt                                                   <  1:3452000/148‑1 (MQ=14)
                                                                                             aTCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTatt                                                   <  2:749595/148‑1 (MQ=11)
                                                                                             aTCAAACGAGCGTTCCCCCTGAGGCCCAAACCCGAAAGAACGTCCATCCTGCAACCTCTGACTGTTTAGTTATCGCTCGCTACCGAGGGGGCGTACTGCATTTTAGTGAAACGCTGAAAGCTAAGCACCAATTGGCTCAAAGTTTact                                                   <  1:1171075/148‑3 (MQ=11)
                                                                                              tCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTattt                                                  <  2:2215504/148‑1 (MQ=14)
                                                                                              tCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCAGCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTattt                                                  <  1:4205370/148‑1 (MQ=11)
                                                                                               cAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttc                                                 <  2:1039914/148‑1 (MQ=11)
                                                                                               cAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttc                                                 <  2:3216741/148‑1 (MQ=11)
                                                                                               cAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCAAAAAGTTTatttc                                                 <  2:2362555/148‑1 (MQ=11)
                                                                                                 aaCGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTattccct                                               >  2:1465012/1‑148 (MQ=14)
                                                                                                 aaCGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAACTGGCTCAAAGTCTattccct                                               >  2:3995932/1‑148 (MQ=11)
                                                                                                   cGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaa                                             <  1:261539/148‑1 (MQ=11)
                                                                                                   cGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaa                                             >  1:2341871/1‑148 (MQ=11)
                                                                                                   cGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTattccctaa                                             <  2:3865817/148‑1 (MQ=11)
                                                                                                   cGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTatttcctaa                                             >  1:3190605/1‑148 (MQ=14)
                                                                                                     aGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACGTCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaatt                                           <  1:4276984/148‑1 (MQ=11)
                                                                                                     aGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTattccctaatt                                           <  1:802636/148‑1 (MQ=11)
                                                                                                      gtgtTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTatttcctaattt                                          >  2:244038/1‑148 (MQ=11)
                                                                                                        gtTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTatttcctaatttcc                                        <  2:3351424/148‑1 (MQ=14)
                                                                                                          tCCCCTTGAGCTTCAAACTCGAAAGAACGTCCATGTTGCAACATCTGACTGTTTAGGTATCGCTTGTTACATTTGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAATGACCAATTGGCTCAAAGTTTatctcctaatttccgc                                      <  2:2773492/148‑3 (MQ=11)
                                                                                                           ccccTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAg                                     >  2:4560608/1‑148 (MQ=11)
                                                                                                           ccccTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAg                                     <  1:1873874/148‑1 (MQ=11)
                                                                                                             ccTTGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGaa                                   <  1:1719786/148‑1 (MQ=11)
                                                                                                               ttGAGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAata                                 <  1:90362/148‑1 (MQ=11)
                                                                                                                tGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAatat                                <  1:2827346/148‑1 (MQ=11)
                                                                                                                  aGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATtc                              <  1:2118702/148‑1 (MQ=11)
                                                                                                                  aGGTTCAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATtc                              <  1:176263/148‑1 (MQ=11)
                                                                                                                       cAAAACCGAAAGAACGTCCATCTTGCAACATCTGACTGTTTAGTGATTACTTGTTACCTGTGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCt                         <  2:2916810/148‑1 (MQ=11)
                                                                                                                          aaCCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTg                      >  1:4372845/1‑148 (MQ=11)
                                                                                                                          aaCCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTg                      >  1:452769/1‑148 (MQ=11)
                                                                                                                           aCCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGt                     <  1:2682812/148‑1 (MQ=11)
                                                                                                                                  gAACGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGt              <  1:1002914/148‑1 (MQ=11)
                                                                                                                                     cGTCCATCTCGCAACATCAGATTGCTTAGTGATTACTTGTTACCTATGGGGCGTACTACATTTTAGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGt           >  2:1294497/1‑148 (MQ=11)
                                                                                                                                              |                                                                                                                                                   
CACTAAGCATTAGAAAGCGCACGACTTATATGACTTATAATAGCACACTTCCAAAAGTTTTTGTTTATTTACTGACAACCATTGAGACGCTTTATCAAACGAGTGTTCCCCTTGAGGTTCAAAACCGAAAGAACGTCCATCTCGCAACATCAGATTGCTTAGTTATCGCTTGTTACCTATGGGGCGTACTGCATTTTAGTGAAACACTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTC  >  CP043523/1894852‑1895141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑