| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP043523 | 1,884,666 | C→T | F116F (TTC→TTT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP043523 | 1,884,666 | 0 | C | T | 99.6% | 1429.3 / ‑3.7 | 441 | F116F (TTC→TTT) | FTN78_chr1930 | Putative UV‑damage repair protein UvrX |
| Reads supporting (aligned to +/- strand): ref base C (2/0); new base T (215/224); total (217/224) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
Only 100 of 441 total aligned reads displayed.
AAGTTTTTGGTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAATCACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTCATT‑GAATCTTGGGCGAAACGCACGTGGATTGTTCCTCCACAAATGCAGCTCTATGTGGACTATAAAATAGAAGTTACGGATATTCTAACCAATTATACATCAATTGATGAAATTCATTCTTACTCGATTGATGAGTCGTT > CP043523/1884521‑1884806 | aaGTTTTTGGTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTAt < 1:3198453/148‑1 (MQ=255) aGTTTTTGGTATGAAAAGTGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTAtt < 1:4499049/148‑1 (MQ=255) gTTTTGGGTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑g < 1:2593810/148‑1 (MQ=255) tttttGGTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑Ga < 2:2535661/148‑1 (MQ=255) tttttGGTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑Ga < 1:1473115/148‑1 (MQ=255) ttttGGTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑Gag > 2:3618511/1‑147 (MQ=255) ttttGGTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑Gag < 2:4096849/148‑2 (MQ=255) ttGGTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTc > 2:3158188/1‑148 (MQ=255) tGGTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCt > 1:2454851/1‑148 (MQ=255) ggTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCtt < 2:588404/148‑1 (MQ=255) gTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTg > 1:3156053/1‑148 (MQ=255) gTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTg < 2:200179/148‑1 (MQ=255) tATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTgg < 2:1394633/148‑1 (MQ=255) tATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTgg > 2:3861452/1‑148 (MQ=255) tGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGc > 1:3574404/1‑148 (MQ=255) tGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGc < 1:2954661/148‑1 (MQ=255) gAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCg > 1:1616686/1‑148 (MQ=255) aaaaaTGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGa > 2:3971680/1‑148 (MQ=255) aaaaTGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGaa > 2:1808505/1‑148 (MQ=255) aaaaTGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGaa < 2:431205/148‑1 (MQ=255) aaaaTGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGaa < 2:3459971/148‑1 (MQ=255) aaaTGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGaaa > 2:669740/1‑148 (MQ=255) tGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGc < 2:4541629/148‑1 (MQ=255) tGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGc > 2:2193287/1‑148 (MQ=255) gTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCa > 1:851203/1‑148 (MQ=255) gTCAGTCGTGCCAGCGATGTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGATACGCa < 2:3416039/148‑1 (MQ=37) cAGTCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATTGGGGTCATGGGCGAAACGctc > 2:888499/1‑146 (MQ=37) tCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTgg > 2:1142519/1‑148 (MQ=255) tCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTgg > 2:1290049/1‑148 (MQ=255) tCGTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTgg < 1:3490856/148‑1 (MQ=255) gTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGAt > 2:91993/1‑148 (MQ=255) gTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGAt > 1:1789985/1‑148 (MQ=255) gTGCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGAt > 1:2035283/1‑148 (MQ=255) gCCAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTACT‑GAGTCTTGGGCGAAACGCACGTGGATTg < 2:3009850/148‑1 (MQ=38) ccAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGt > 2:4500251/1‑148 (MQ=255) cAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGtt > 2:2378620/1‑148 (MQ=255) cAGCGATTTACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGtt < 2:2126837/148‑1 (MQ=255) tttACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTtcctcct > 2:2224458/1‑147 (MQ=255) tttACCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTtcctcct < 2:2069534/148‑2 (MQ=255) aCCTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCaa < 2:2695483/148‑1 (MQ=255) ccTTTTCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCaaa < 1:1191764/148‑1 (MQ=38) ttttCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATg > 2:3069592/1‑148 (MQ=255) ttttCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATg < 2:2921172/148‑1 (MQ=255) tCTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAg > 1:2551645/1‑148 (MQ=38) cTTATAGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGc > 2:1486841/1‑148 (MQ=255) tataGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGctc < 1:3084538/148‑1 (MQ=37) ataGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGctct < 1:4541815/148‑1 (MQ=255) ataGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGctct < 2:1905526/148‑1 (MQ=255) taGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTa < 2:480221/148‑1 (MQ=255) taGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTa > 1:338389/1‑148 (MQ=255) taGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTa > 1:736311/1‑148 (MQ=255) taGAAACACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTa > 2:3819373/1‑148 (MQ=255) aaacACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTAtgt > 1:366857/4‑148 (MQ=37) aacACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTAtgtg > 2:125088/3‑148 (MQ=255) aacACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTAtgtg < 1:629197/146‑1 (MQ=255) acACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTTCTCCTCAAATGCAGCTCTATGTgg > 2:768296/2‑148 (MQ=255) cACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGa > 1:2724821/1‑148 (MQ=255) cACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGa < 1:2975364/148‑1 (MQ=255) aCGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGAc < 1:4337026/148‑1 (MQ=255) gAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACta < 1:4687219/148‑1 (MQ=255) aaGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACtata > 1:2922430/1‑148 (MQ=255) aGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATaa < 1:1532677/148‑1 (MQ=255) gTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATaaa > 2:1187655/1‑148 (MQ=255) ttCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATaaaa < 1:833641/148‑1 (MQ=255) cAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAAtt < 2:1629045/148‑2 (MQ=255) aTTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAAttaa < 2:2882402/148‑4 (MQ=37) ttATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAAttaaa > 2:392986/1‑144 (MQ=37) tCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAAttaaagtg < 2:3557984/148‑8 (MQ=25) gCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGtgaca > 2:3735616/1‑144 (MQ=255) ggTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGatat > 2:2622654/1‑148 (MQ=255) caTACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAAtt < 2:4364444/148‑1 (MQ=255) aTACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATta > 1:4026196/1‑148 (MQ=255) aCAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATtata > 1:2303522/1‑148 (MQ=25) aCAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATtata > 1:1880191/1‑148 (MQ=25) aCAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATtata < 1:1286632/148‑1 (MQ=255) ttCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAAt > 1:1938947/1‑148 (MQ=25) ttCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAAt < 2:3243045/148‑1 (MQ=21) ttCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAAt > 1:2825880/1‑148 (MQ=25) ttCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAAt < 1:100146/148‑1 (MQ=25) cATGGACAGCGAACTGAACCAACTTTGCAGTATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATtg < 2:4157352/148‑1 (MQ=255) tGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATtgat > 2:2420179/1‑148 (MQ=21) aCAGCGAACTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTACACATCAATTgaagaa > 2:329021/1‑148 (MQ=18) acggaCTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGatt < 1:3871561/144‑1 (MQ=18) aaCTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGattcac < 1:669740/148‑2 (MQ=255) aCTGAACCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGattcact > 1:4574470/1‑146 (MQ=255) aaCCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGattcactccta > 1:3328448/1‑142 (MQ=255) aCCAACTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTAc > 1:1055814/1‑148 (MQ=255) aaCTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCg < 1:3442202/148‑1 (MQ=255) aaCTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCg < 2:2162723/148‑1 (MQ=255) aCTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGa < 2:4444381/148‑1 (MQ=18) aCTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGa > 1:3784785/1‑148 (MQ=255) cTTTGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGAt < 1:4393106/148‑1 (MQ=21) tGCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATtga > 1:989437/1‑148 (MQ=255) gCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATtgat < 2:4606313/148‑1 (MQ=18) gCAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATtgat > 2:820427/1‑148 (MQ=18) cAATATGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATtgatg < 1:414666/148‑1 (MQ=255) atatGTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATtgatgaa < 2:1353098/148‑2 (MQ=18) gTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATctt > 1:171503/1‑146 (MQ=255) gTCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATctt > 1:141004/1‑146 (MQ=255) tCGCTTTTATT‑GAGTCTTGGGCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATtgatgaatcttt < 1:2128727/148‑7 (MQ=16) | AAGTTTTTGGTATGAAAAATGTCAGTCGTGCCAGCGATTTACCTTTTCTTATAGAATCACGAAAGTTCAATTATCCGCAATGGTATCGAACACATACAGACATTCATGGACAGCGAACTGAACCAACTTTGCAATATGTCGCTTTCATT‑GAATCTTGGGCGAAACGCACGTGGATTGTTCCTCCACAAATGCAGCTCTATGTGGACTATAAAATAGAAGTTACGGATATTCTAACCAATTATACATCAATTGATGAAATTCATTCTTACTCGATTGATGAGTCGTT > CP043523/1884521‑1884806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |