Predicted mutation
evidence seq id position mutation annotation gene description
RA CP043523 1,882,567 G→A intergenic (+278/‑277) FTN78_chr1926 → / → FTN78_chr1927 hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0435231,882,5670GA100.0% 1121.2 / NA 503intergenic (+278/‑277)FTN78_chr1926/FTN78_chr1927hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (327/176);  total (327/176)

Only 100 of 503 total aligned reads displayed.

AGAGCTTTCCATTTCTTCGGTTCTTTTTGTATATGCCTCGAATAGTCTCCATGCCCTTTATCGTGGTTGAGGCAGTACGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCTATTAGATTGTTAAGGTATTTCACGGTTCGATGCTCTGTCTTAGTATATAATTCATTACTCTGTAATTTTCTAAAGGCAGAGCCAATAGACGGAGCTTTATCCGTGACAATTACTCTAGGTTCAACAAACTGCTTATGTAGTCGTTTCAAGA  >  CP043523/1882422‑1882703
                                                                                                                                                 |                                                                                                                                        
  agcgttCCATTTCTTCGGTTCTTTTTTTATTTTCTTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATact                                                                                                                                      >  2:1100214/5‑146 (MQ=17)
    cgttCCATTTCTTCGGTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTc                                                                                                                                    >  1:2253893/3‑148 (MQ=17)
    cgttCCATTTCTTCGGTTCTTTTTGTATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGTTCTATTAAATTGTTAAGATACTTc                                                                                                                                    >  1:1636808/3‑148 (MQ=11)
    cgttCCATTTCTTCGGTTCTTTTTGTATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGTTCTATTAAATTGTTAAGATACTTc                                                                                                                                    >  2:330554/3‑148 (MQ=11)
     gttCCATTTCTTCGGTTCTTTTTGTATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGTTCTATTAAATTGTTAAGATACTTCa                                                                                                                                   >  1:4305729/2‑148 (MQ=11)
     gttCCATTTCTTCGGTTCTTTTTGTATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGTTCTATTAAATTGTTAAGATACTTCa                                                                                                                                   <  2:324722/147‑1 (MQ=11)
        ccATTTCTTCGGTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACgg                                                                                                                                >  2:1502168/1‑148 (MQ=17)
        ccATTTCTTCGGTTCTTTTTGTATATTCCTCGAAGGGTCTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGTTCTATTAAATTGTTAAGATACTTCAcag                                                                                                                                <  2:4603744/148‑3 (MQ=11)
                tcGGTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGc                                                                                                                        <  2:2226760/148‑1 (MQ=255)
                tcGGTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGc                                                                                                                        >  2:1173220/1‑148 (MQ=255)
                  ggTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGTTCTATTAAATTGTTAAGATACTTCACAGTTCGGTGctc                                                                                                                      >  1:4690308/1‑148 (MQ=11)
                  ggTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGctc                                                                                                                      <  1:2321201/148‑1 (MQ=18)
                   gTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCTATTAAATTGTTAAGATACTTCACAGTTCGGTGctct                                                                                                                     <  2:3966835/148‑1 (MQ=14)
                   gTTCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGctct                                                                                                                     >  2:3169799/1‑148 (MQ=18)
                    ttCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTg                                                                                                                    <  2:2301115/148‑1 (MQ=255)
                    ttCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTg                                                                                                                    >  1:1027005/1‑148 (MQ=255)
                     tCTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGt                                                                                                                   >  1:4610994/1‑148 (MQ=255)
                      cTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTc                                                                                                                  >  1:908696/1‑148 (MQ=255)
                      cTTTTTGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTc                                                                                                                  >  2:3688826/1‑148 (MQ=255)
                       tttttGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCt                                                                                                                 <  2:563294/148‑1 (MQ=255)
                       tttttGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCt                                                                                                                 >  1:3380572/1‑148 (MQ=18)
                        ttttGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCtt                                                                                                                <  2:2401014/148‑1 (MQ=255)
                         tttGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTa                                                                                                               <  1:1787584/148‑1 (MQ=255)
                         tttGTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTa                                                                                                               >  1:4255798/1‑148 (MQ=255)
                            gTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAgga                                                                                                            >  1:2558208/1‑146 (MQ=255)
                            gTATATTCCTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGta                                                                                                            >  2:430150/1‑148 (MQ=255)
                               tattccTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGtatat                                                                                                         <  2:2185170/144‑1 (MQ=255)
                               tattccTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGtatat                                                                                                         >  2:3057439/5‑148 (MQ=17)
                                 ttccTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATaa                                                                                                       >  1:2636962/3‑148 (MQ=17)
                                  tccTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATaaa                                                                                                      <  1:1246207/147‑2 (MQ=18)
                                    cTCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATaaacc                                                                                                    >  1:2799056/1‑145 (MQ=18)
                                     tCGAATTGTTTCCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATaaaccg                                                                                                   >  2:2857310/1‑144 (MQ=18)
                                               tcCATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTa                                                                                         >  1:757155/1‑148 (MQ=17)
                                                 cATGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTaac                                                                                       >  2:3638710/1‑147 (MQ=18)
                                                   tGCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAActt                                                                                     <  2:3876689/148‑1 (MQ=17)
                                                    gCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAActtt                                                                                    >  2:2360404/1‑148 (MQ=17)
                                                    gCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAActtt                                                                                    <  2:2605804/148‑1 (MQ=17)
                                                    gCCCTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAActtt                                                                                    >  1:3025822/1‑148 (MQ=17)
                                                     cccTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTc                                                                                   <  2:1665642/148‑1 (MQ=17)
                                                      ccTTAATCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCt                                                                                  >  1:1464654/1‑148 (MQ=17)
                                                       cttaaTCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTa                                                                                 >  2:1969143/5‑148 (MQ=17)
                                                        ttaaTCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTaa                                                                                >  1:1895785/4‑148 (MQ=17)
                                                         taaTCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTaaa                                                                               <  2:2802663/146‑1 (MQ=18)
                                                         taaTCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTaaa                                                                               >  2:7836/3‑148 (MQ=17)
                                                          aaTCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGCCTTAGTATATAAACCGTTACTCTGTAACTTTCTaaat                                                                              <  2:4712827/147‑2 (MQ=255)
                                                           aTCGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTaaatg                                                                             <  2:81445/148‑3 (MQ=18)
                                                             cGTGGTTGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCa                                                                           >  2:4483070/1‑148 (MQ=17)
                                                                  ttGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCagaacc                                                                      >  2:4355802/1‑145 (MQ=12)
                                                                  ttGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAAcc                                                                      <  2:2589771/148‑1 (MQ=17)
                                                                  ttGAGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAAcc                                                                      >  2:4381869/1‑148 (MQ=17)
                                                                     aGGCAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAAt                                                                   <  1:267745/148‑1 (MQ=12)
                                                                        cAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGa                                                                >  2:4246898/1‑148 (MQ=12)
                                                                        cAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGa                                                                <  2:677248/148‑1 (MQ=12)
                                                                        cAGTTCGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGa                                                                >  1:2211737/1‑148 (MQ=17)
                                                                          gttcGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGagg                                                              >  1:1552543/4‑146 (MQ=12)
                                                                            tcGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGagggc                                                            >  1:16691/2‑144 (MQ=12)
                                                                                aGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAGCCAAGAGAAGGCGCtt                                                        >  1:713736/1‑148 (MQ=9)
                                                                                 gACTACGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGATATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCttt                                                       >  2:2126546/1‑148 (MQ=9)
                                                                                  aCTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAgggcgattta                                                      >  2:3432356/1‑141 (MQ=12)
                                                                                  aCTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTa                                                      >  1:2462052/1‑148 (MQ=12)
                                                                                    ttCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATc                                                    >  1:1010650/1‑148 (MQ=12)
                                                                                      tgATAAAATTTATTTCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCg                                                  >  2:3927091/2‑148 (MQ=9)
                                                                                        aTAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTg                                                <  2:2923055/148‑1 (MQ=12)
                                                                                           aaaTTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACa                                             <  2:1239570/148‑1 (MQ=12)
                                                                                           aaaTTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACa                                             <  2:4036223/148‑1 (MQ=12)
                                                                                           aaaTTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACa                                             <  1:2391820/148‑1 (MQ=12)
                                                                                            aaTTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACaa                                            >  1:85760/1‑148 (MQ=12)
                                                                                             aTTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAAt                                           >  1:4156255/1‑148 (MQ=12)
                                                                                              tttATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAAtt                                          <  2:2477939/148‑1 (MQ=12)
                                                                                              tttATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAAtt                                          >  2:268901/1‑148 (MQ=12)
                                                                                               ttATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTa                                         >  2:4533504/1‑148 (MQ=12)
                                                                                                 aTTGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTAct                                       >  2:1770289/1‑148 (MQ=16)
                                                                                                  ttGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTActc                                      <  1:2880965/148‑1 (MQ=16)
                                                                                                   tGCGTCGTTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTActct                                     <  2:421913/148‑1 (MQ=12)
                                                                                                     cgtcgtTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTActcttg                                   >  1:4463521/1‑146 (MQ=12)
                                                                                                     cgtcgtTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTActcttg                                   <  2:1589042/148‑3 (MQ=12)
                                                                                                      gtcgtTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTActcttgg                                  >  2:4149929/1‑145 (MQ=12)
                                                                                                        cgtTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGtt                                >  2:8889/1‑148 (MQ=16)
                                                                                                        cgtTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGtt                                >  1:2137955/1‑148 (MQ=16)
                                                                                                         gtTTGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGttg                               <  2:1418639/148‑2 (MQ=16)
                                                                                                          tttGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGttga                              >  2:3575568/1‑146 (MQ=12)
                                                                                                           ttGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGttgac                             >  1:1115780/1‑145 (MQ=12)
                                                                                                           ttGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGttgac                             >  1:1282706/1‑145 (MQ=12)
                                                                                                           ttGATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGttgac                             >  1:3213136/1‑145 (MQ=12)
                                                                                                             gATTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGttgacca                           >  2:1352067/1‑143 (MQ=12)
                                                                                                              aTTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGttgaccaa                          >  2:3157575/1‑142 (MQ=12)
                                                                                                              aTTGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGttgaccaa                          >  1:3846023/1‑142 (MQ=12)
                                                                                                               ttGTTCGATGGTCTTAATCAATGATGTTATTGAGATACTTCGTGTTTCCACGCTCTGTCTTAATATATAAACCATTACTCTGTATCTTTCTATCTGCACTACTAATTGAGTGCGATTTATCCGTGACAATTACTCTTGGTTAACCaaa                         <  2:1046103/148‑1 (MQ=255)
                                                                                                                tGGTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGTTGACCAAAc                        <  2:1554294/148‑1 (MQ=12)
                                                                                                                 ggTCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGTTGACCAAACt                       >  1:607223/1‑148 (MQ=12)
                                                                                                                   tCGATGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGTTGACCAAACTgt                     >  1:405882/1‑147 (MQ=12)
                                                                                                                      aTGGTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGTTGACCAAACTGTTTa                  >  2:535563/1‑148 (MQ=9)
                                                                                                                       tGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGTTGACCAAACTGTTTAt                 <  1:2048768/148‑1 (MQ=9)
                                                                                                                       tGGTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGTTGACCAAACTGTTTAt                 >  1:1398409/1‑148 (MQ=9)
                                                                                                                        ggTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGTTGACCAAACTGTTTATg                <  2:1839107/148‑1 (MQ=9)
                                                                                                                        ggTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGTTGACCAAACTGTTTATg                <  1:3575568/148‑1 (MQ=9)
                                                                                                                        ggTCTTGCTCAATGAGGTTATTGAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGTTGACCAAACTGTTTATg                >  2:2992666/1‑148 (MQ=9)
                                                                                                                         gTCTTGCTCAATGAGGTTATTGAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGTTGACCAAACTGTTTATgg               >  2:3735746/1‑147 (MQ=9)
                                                                                                                            ttgttctATTAAATTGTTAAGATACTTCGCGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGCAGAACCAATAGAGGGCGATTTATCCGTGACAATTACTCTTGGTTGACCAAACTGTTTATGGAGt            >  2:2431357/5‑148 (MQ=2)
                                                                                                                                      aaaTTGTTAAGATACTTCACGGTTCGATGCTCTGTCTTAGTATATAAACCGTTACTCTGTAACTTTCTAAATGTAGAACCAATAGAGGGCGCTTTATCCGTGACAATTACTCTTGGTTGACCAAACTGTTTATGTAGTCGTTTCAAGa  <  1:3755925/146‑1 (MQ=9)
                                                                                                                                                 |                                                                                                                                        
AGAGCTTTCCATTTCTTCGGTTCTTTTTGTATATGCCTCGAATAGTCTCCATGCCCTTTATCGTGGTTGAGGCAGTACGTAGACTTCGATAAAATTTATTGCGTCGTTTGATTGGTCGATGGTCTTGCTCTATTAGATTGTTAAGGTATTTCACGGTTCGATGCTCTGTCTTAGTATATAATTCATTACTCTGTAATTTTCTAAAGGCAGAGCCAATAGACGGAGCTTTATCCGTGACAATTACTCTAGGTTCAACAAACTGCTTATGTAGTCGTTTCAAGA  >  CP043523/1882422‑1882703

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: