| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP043523 | 1,883,610 | A→C | intergenic (+13/‑141) | FTN78_chr1928 → / → FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP043523 | 1,883,610 | 0 | A | C | 99.8% | 1815.5 / NA | 498 | intergenic (+13/‑141) | FTN78_chr1928/FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base C (250/247); total (251/247) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 498 total aligned reads displayed.
AAGAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGAAAAGTAAGTGATAGGATTGATGCCAAACTCGCCTGTGATACCTTAGAAATAGCTATAACTAAGAGGAAGCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTG > CP043523/1883470‑1883753 | gAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATg < 1:1371236/148‑1 (MQ=255) gAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATg < 1:2081243/148‑1 (MQ=255) ttAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCaa < 1:1703216/148‑1 (MQ=255) ttAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCaa > 2:3376454/1‑148 (MQ=255) aaCCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAAc > 2:1156932/1‑148 (MQ=255) cGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGc < 2:2467920/148‑1 (MQ=255) gAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGcc > 2:1334230/1‑148 (MQ=255) ttCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCtgc > 2:1860885/1‑147 (MQ=255) ccccAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCtgcga > 1:1326979/1‑145 (MQ=255) cccAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCtgcgac < 2:4569862/148‑5 (MQ=255) ccAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGTCtgcgaca > 2:2805907/1‑143 (MQ=255) ccAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCtgcgaca < 1:1179819/148‑6 (MQ=255) aaaTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACAcc > 2:1555204/1‑148 (MQ=255) aaTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCt < 2:2693221/148‑1 (MQ=255) aaTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCt < 1:3851182/148‑1 (MQ=255) aTCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCtt < 1:2793000/148‑1 (MQ=255) tCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTa > 2:4387735/1‑148 (MQ=255) cAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAg < 1:2460557/148‑1 (MQ=255) tttGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAAt < 2:954434/148‑1 (MQ=255) tGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAg < 2:1042852/148‑1 (MQ=255) tGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAg > 1:3957182/1‑148 (MQ=255) ggACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGc > 1:3453658/1‑148 (MQ=255) gACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCt > 1:556660/1‑148 (MQ=255) gACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCt < 2:1209540/148‑1 (MQ=255) gACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCt < 2:3638752/148‑1 (MQ=255) acaacaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCta > 1:4134283/1‑148 (MQ=255) acaGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATaa < 2:2960023/148‑1 (MQ=255) caGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATaaa > 2:4243286/1‑147 (MQ=255) aggtttCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATaaat < 2:3167265/145‑3 (MQ=255) gATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATa < 1:2895777/148‑1 (MQ=255) aTTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTataaataa < 2:3898267/148‑1 (MQ=255) ttCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAaga > 2:3966985/1‑148 (MQ=255) ttCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAaga < 1:4319759/148‑1 (MQ=255) tCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAagag < 2:1295979/148‑1 (MQ=255) aCTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGa < 2:3231660/148‑1 (MQ=255) aCTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGa < 2:2927847/148‑1 (MQ=255) cTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGaa < 2:3718185/148‑1 (MQ=255) ttATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGaat > 1:986742/1‑147 (MQ=255) atCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTa > 2:3829884/1‑148 (MQ=255) tctcTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTaa < 2:4615382/148‑1 (MQ=255) ataGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAAc > 1:2401016/1‑148 (MQ=255) ataGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAAc > 1:3137384/1‑148 (MQ=255) taGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAAcc > 2:1903174/1‑148 (MQ=255) taGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAAcc > 1:3662782/1‑148 (MQ=255) aGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCa > 2:1934649/1‑148 (MQ=255) ggAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCaa > 1:1469928/1‑148 (MQ=255) tAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATc > 2:4553068/1‑148 (MQ=255) aGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCtt > 1:2864924/1‑148 (MQ=255) aGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCtt > 1:4038856/1‑148 (MQ=255) aGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCtt > 1:1945703/1‑148 (MQ=255) aGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCtt < 2:1451591/148‑1 (MQ=255) gCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCttt > 1:2519954/1‑148 (MQ=255) cATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCAtt > 2:3492371/1‑148 (MQ=255) aTGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTc > 2:1393151/1‑148 (MQ=255) aTGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTc < 2:369368/148‑1 (MQ=255) tGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCg > 2:814343/1‑148 (MQ=255) tttATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGa < 1:3049297/148‑1 (MQ=255) tttATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGa > 2:863197/1‑148 (MQ=255) ttATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGAt > 1:3222355/1‑148 (MQ=255) tATCTCTGTGCTATTCTTGACCTCTACTCAATGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATc > 1:2601665/1‑148 (MQ=255) aTCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCa < 2:656145/148‑1 (MQ=255) aTCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCa > 1:2020442/1‑148 (MQ=255) tctGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAgg > 1:4072290/1‑148 (MQ=255) gtgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAg > 2:518547/1‑148 (MQ=255) gtgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAg < 2:4474382/148‑1 (MQ=255) tgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGc < 2:2170133/148‑1 (MQ=255) tgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGc > 1:634244/1‑148 (MQ=255) gatATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAATCTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGcc < 1:3334309/146‑1 (MQ=255) tATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCaa < 1:1860885/148‑1 (MQ=255) aTTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAt > 2:414014/1‑148 (MQ=255) ttCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAtt > 2:2318243/1‑148 (MQ=255) tCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAttt < 2:1100531/148‑1 (MQ=255) tCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAttt > 1:745369/1‑148 (MQ=255) cTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTa < 1:1088787/148‑1 (MQ=255) cTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTa > 2:3001615/1‑148 (MQ=255) gACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAAt < 1:943180/148‑1 (MQ=255) aCCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATc > 2:1472492/1‑148 (MQ=255) ccTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCa > 2:4710118/1‑148 (MQ=255) tctACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGc > 2:2241390/1‑148 (MQ=255) aCTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTc > 2:755756/1‑148 (MQ=255) aCTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTc < 1:1760818/148‑1 (MQ=255) tCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCt < 1:3776919/148‑1 (MQ=255) cAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCtt < 2:2144698/148‑1 (MQ=255) cAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCtt < 2:2072839/148‑1 (MQ=255) aaGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCttt < 1:4190818/148‑1 (MQ=255) aGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTcc < 1:4490519/144‑1 (MQ=255) ggAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAg > 1:2240480/1‑148 (MQ=255) gAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGa < 2:2853342/148‑1 (MQ=255) gAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGa > 1:4584289/1‑148 (MQ=255) tGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGt > 2:2633126/1‑148 (MQ=255) tGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGt > 2:3557938/1‑148 (MQ=255) aTTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGttat < 2:181131/148‑1 (MQ=255) aTTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGttat > 1:2365929/1‑148 (MQ=255) cGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGa > 2:1633994/1‑148 (MQ=255) gaaaGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAg < 1:491737/147‑1 (MQ=255) gaaaGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAg > 1:222577/2‑148 (MQ=255) aaaGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGc < 1:3556349/148‑1 (MQ=255) aagtaagtGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCa > 2:3773116/1‑148 (MQ=255) aagtaagtGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGGTATTAGATGAGCa > 1:4281578/1‑148 (MQ=255) agtaagtGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCAt > 1:4659024/1‑148 (MQ=255) | AAGAATTTAACCCGAATTCCCCAAATCAAGTTTGGACAACAGATTTCACTTATATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGAAAAGTAAGTGATAGGATTGATGCCAAACTCGCCTGTGATACCTTAGAAATAGCTATAACTAAGAGGAAGCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAATTTAAATCAGCTTCCTTTAGAAAGTTATTAGATGAGCATCAATTG > CP043523/1883470‑1883753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |