| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP043523 | 1,883,666 | G→T | intergenic (+69/‑85) | FTN78_chr1928 → / → FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP043523 | 1,883,666 | 0 | G | T | 91.9% | 1725.9 / 102.8 | 555 | intergenic (+69/‑85) | FTN78_chr1928/FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (270/240); minor base A (26/19); total (296/259) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 555 total aligned reads displayed.
TATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGAAAAGTAAGTGATAGGATTGATGCCAAACTCGCCTGTGATACCTTAGAAATAGCTATAACTAAGAGGAAGCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAAGCCTGGATATCCCTATGATAATGCCGTCACTGATGT > CP043523/1883522‑1883806 | tatCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCt < 1:3316433/148‑1 (MQ=255)tatCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCt < 2:1188297/148‑1 (MQ=255) atCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTa < 1:2451082/148‑1 (MQ=255) ataGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAAc > 1:3137384/1‑148 (MQ=255) taGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAAcc > 2:1903174/1‑148 (MQ=255) aGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCa > 1:4313134/1‑148 (MQ=255) ggAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCaa > 1:3634016/1‑148 (MQ=255) ggAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCaa < 2:1067987/148‑1 (MQ=255) aGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAAtt > 2:3770836/1‑148 (MQ=255) cTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTAt > 2:2623426/1‑148 (MQ=255) aGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCtt > 2:1127927/1‑148 (MQ=255) cGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTc > 2:4219143/1‑148 (MQ=255) gACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCa < 2:156779/148‑1 (MQ=255) aTGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTc > 2:2166317/1‑148 (MQ=255) tGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCg < 2:2758818/148‑1 (MQ=255) gTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCgg > 1:568250/1‑148 (MQ=255) gTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCgg > 2:627095/1‑148 (MQ=255) ttATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGAt > 1:3222355/1‑148 (MQ=255) tATCTCTGTGCTATTCTTGACCTCTACTCAATGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATc > 1:2601665/1‑148 (MQ=255) tctcTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCaa > 1:4261843/1‑148 (MQ=255) ctGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGa < 1:1691640/148‑1 (MQ=255) gtgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAg < 2:3701376/148‑1 (MQ=255) gtgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAg > 1:1464329/1‑148 (MQ=255) gtgCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAg > 2:518547/1‑148 (MQ=255) tATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCaa < 1:1861699/148‑1 (MQ=255) tATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCaa < 2:1024921/148‑1 (MQ=255) tATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCaa < 2:1158693/148‑1 (MQ=255) ttCTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAt‑t > 1:1293306/1‑148 (MQ=255) cTTGACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTa > 1:4082126/1‑148 (MQ=255) gACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAAt < 2:763040/148‑1 (MQ=255) gACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAAt < 2:3825862/148‑1 (MQ=255) gACCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAAt > 2:4560229/1‑148 (MQ=255) aCCTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATc < 1:2054016/148‑1 (MQ=255) ccTCTACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCa > 2:4710118/1‑148 (MQ=255) ctctACTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAg < 1:761043/148‑1 (MQ=255) aCTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTc > 2:1847344/1‑148 (MQ=255) aCTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTc < 1:1390494/148‑1 (MQ=255) aCTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTc > 2:756033/1‑148 (MQ=255) cgcAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTCAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTc‑‑‑c < 2:3528721/146‑1 (MQ=255) cTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTc‑‑‑c > 2:4392228/1‑148 (MQ=255) cTCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTc‑‑‑c > 1:1935814/1‑148 (MQ=255) tCAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑Ct < 2:1465025/148‑1 (MQ=255) cAAGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑Ctt < 2:2072839/148‑1 (MQ=255) aaGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑Cttt > 2:1756654/1‑148 (MQ=255) aaGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑Cttt > 2:909658/1‑148 (MQ=255) aGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTc‑‑‑c > 2:4490519/1‑144 (MQ=255) aGGAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTa > 1:2400880/1‑148 (MQ=255) ggAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAg > 1:2240480/1‑148 (MQ=255) gAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGa < 1:92655/148‑1 (MQ=255) gAAATGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGa > 1:4584289/1‑148 (MQ=255) aaaTGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGaa > 1:1127660/1‑148 (MQ=255) aTGTATTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAg < 1:2795291/148‑1 (MQ=255) aTTGCGTGGAAAGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGttat < 2:2852214/148‑1 (MQ=255) tggaaaGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATg > 2:2890911/4‑148 (MQ=255) tggaaaGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATg < 1:3953381/145‑1 (MQ=255) gaaaGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAg < 1:491737/147‑1 (MQ=255) gaaaGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑CTC‑‑‑CGTTAGAAAGTTATTAGATGAg < 2:2323145/147‑1 (MQ=255) aaaGTAAGTGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGc < 1:3556349/148‑1 (MQ=255) agtaagtGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCAt > 1:4655993/1‑148 (MQ=255) agtaagtGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCAt > 2:2219853/1‑148 (MQ=255) gtaagtGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATc < 1:1745991/148‑1 (MQ=255) agtGATCGAATTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAAt > 1:3030827/1‑148 (MQ=255) gaaTTGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAAttgcttgc < 1:4178248/146‑1 (MQ=255) ttGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGcttc < 2:430427/148‑1 (MQ=255) ttGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGcttc > 1:905192/1‑148 (MQ=255) ttGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGcttc > 1:3904470/1‑148 (MQ=255) tGATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGcttct > 1:1200111/1‑148 (MQ=255) gATGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGcttctt < 1:710406/148‑1 (MQ=255) aTGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTA > 1:3773853‑M1/1‑148 (MQ=255) aTGCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTA > 1:2316158‑M1/1‑148 (MQ=255) gCCAAACTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACT < 1:4430271‑M1/148‑1 (MQ=255) aCTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAtt < 2:3682555‑M1/148‑3 (MQ=255) aCTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAtt > 2:3353023‑M1/1‑146 (MQ=255) cTCGCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttc > 2:407529‑M1/1‑145 (MQ=255) gCCTGCGACACCTTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaag < 2:2273590‑M1/148‑7 (MQ=255) gcgacaccttaGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagt > 1:1978239‑M1/6‑138 (MQ=255) gcgacaccttaGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagt < 2:296914‑M1/143‑11 (MQ=255) gacacctTAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttc < 2:1939349‑M1/145‑13 (MQ=255) cagaaccgAAATAGCTATAAATAAGAGGAAACCTAAGGAACCAATTATTTTTCATTCGGATCATGGCTGAATAA‑TCAACT‑AGCAATTCGGGTTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAAGCCTGGata < 1:1008594/141‑1 (MQ=255) gaaccgAAATAGCTATAAATAAGAGGAAACCTAAGGAACCAATTATTTTTCATTCGGATCATGGCTGAATAA‑TCAACT‑AGCAATTCGGGTTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAAGCCTGGATATc < 2:3849652/143‑1 (MQ=255) tAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctc > 2:3010575‑M1/1‑129 (MQ=255) tAGAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctc < 1:4040455‑M1/148‑20 (MQ=255) cgAAATAGCTATAAATAAGAGGAAACCTAAGGAGCCAATTATTTTTCATTCGGATCATGGCTG‑‑AATAATCAACTAGCAATTCGGGTTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAAGCCTGGATATCCTTa < 1:3376816/147‑1 (MQ=255) gcaataGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctctt < 2:1306898‑M1/146‑22 (MQ=255) gAAATAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctctt > 1:2655332‑M1/1‑127 (MQ=255) gAAATAGCTATAAATAAGAGGAAACCTAAGGAACCAATTATTTTTCATTCGGATCATGGCTGAATAA‑TCAACT‑AGCAATTCGGGTTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAAGCCTGGATATCCTTAt > 1:4545541/1‑148 (MQ=255) aaaTAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctcttg < 1:976161‑M1/148‑23 (MQ=255) aaaTAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctcttg > 2:1402371‑M1/1‑126 (MQ=255) aaTAGCTATAAATAAGAGGAAACCTAAGGAACCAATTATTTTTCATTCGGATCATGGCTGAATAA‑TCAACT‑AGCAATTCGGGTTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAAGCCTGGATATCCTTATGa > 1:2520322/1‑148 (MQ=255) aTAGCTATAAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctcttgct < 1:2488082‑M1/148‑25 (MQ=255) tataAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcacatctcttgctttgaa > 2:3933040‑M1/1‑119 (MQ=255) taaataagaGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctcttgctttgaata > 1:2182296‑M1/5‑117 (MQ=255) taAATAAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctcttgctttgaata < 1:2948127‑M1/148‑32 (MQ=255) ataAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctcttgctttgaatacat > 2:2921182‑M1/2‑114 (MQ=255) ataAGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctcttgctttgaatacat < 2:3137384‑M1/147‑35 (MQ=255) aaGAGGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctcttgctttgaatacatcg > 2:3437631‑M1/1‑112 (MQ=255) agagGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCGttcaagaagttcaactctcttgctttgaatacatcga > 2:3242913‑M1/1‑111 (MQ=255) agagGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctcttgctttgaatacatcga > 2:681207‑M1/1‑111 (MQ=255) agagGAATCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAttcaagaagttcaactctcttgctttgaatacatcga < 2:4038856‑M1/148‑38 (MQ=255) gagGAAACCTAAGGAACCAATTATTTTTCATTCGGATCATGGCTGAATAA‑TCAACT‑AGCAATTCGGGTTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAGGCCTGGATATCCTTATGATAATGCCGTCACTGa < 2:1479746/148‑1 (MQ=255) | TATCTCTATAGGAGCTAAGCGACATGTTTATCTCTGTGCTATTCTTGACCTCTACTCAAGGAAATGTATTGCGTGAAAAGTAAGTGATAGGATTGATGCCAAACTCGCCTGTGATACCTTAGAAATAGCTATAACTAAGAGGAAGCCTAAGGAACCAATTATCTTTCATTCGGATCAAGGAAGCCAAT‑TTAAATCAGC‑‑TTC‑‑‑CTTTAGAAAGTTATTAGATGAGCATCAATTGCTTGCTTCTTACTCCAAGCCTGGATATCCCTATGATAATGCCGTCACTGATGT > CP043523/1883522‑1883806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |