New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 793688	27 (0.710)	3 (0.080)	3/404	4.5	5.5%	coding (101/1473 nt)	modF	ABC family protein ModF
	?	NC_000913	3676724 =	76 (2.030)					coding (1627/2061 nt)	yhjG	AsmA family protein YhjG
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGGGCGGTAATACCGAACTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCA  >  NC_000913/793406‑793947                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                    ggggCGGTAATACGGAACTGCTGCGCCAGTTGCATGCAACGCGGAGTATCCTTTACTTCATCCTGAATGATCTCAGCCGTTGTACGCCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGCTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAAATGGCTTTGCCCTTCACCTTTCAACAGCGGAAGTTCCCCCGACAGCGCGCGGGCCAGCGCCGATTTCCCGCTTCCATTCGAACCGACAAACGcc                                                                                                                                                                                                                                                                <  1:77682/287‑1 (MQ=255)     cGGTAATACCGAACTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAAc                                                                                                                                                                                                                                                            >  1:97560/1‑288 (MQ=255)     cGGTAATACCGAACTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTCTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCAGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGTGCGCGGGCTAGGGCCGATTTCCCGATTCCATTCCAACCGACAAACTCCAAAc                                                                                                                                                                                                                                                            >  1:652165/1‑288 (MQ=255)            aCCGAACTGCTGGGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATTGTCTCAGCCGTAGGGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGGGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCAcc                                                                                                                                                                                                                                                     <  1:294513/288‑1 (MQ=255)                                                            aTCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGcc                                                                                                                                                                                                                                                                <  1:192485/229‑1 (MQ=255)                                                                            gCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCTGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTaa                                                                                                                                                                                                                                            >  1:453213/1‑233 (MQ=255)                                                                              cGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGTCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGcc                                                                                                                                                                                                                                                                <  1:50502/211‑1 (MQ=255)                                                                                                                aGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCa                                                                                                                                                                                                                                                       >  1:506549/1‑186 (MQ=255)                                                                                                                          tgtTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCa                                                                                                                                                                                                                                                       >  1:5441/1‑176 (MQ=255)                                                                                                                                    cTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGc                                                                                                                                                                                                                                     >  2:318783/1‑184 (MQ=255)                                                                                                                                    cTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGc                                                                                                                                                                                                                                     <  1:318783/184‑1 (MQ=255)                                                                                                                                                                aaTTGCTCAAAGGAGAGACGAGTGGTGTGGAAAACCTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                  <  1:375351/287‑1 (MQ=255)                                                                                                                                                                         aaGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACACACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGc                                                                                         <  1:343109/287‑1 (MQ=255)                                                                                                                                                                          aGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCTCTAAGa                                                                                                                                                                                                    >  1:79668/1‑179 (MQ=255)                                                                                                                                                                                           tgGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGAGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGTTTACTGACAGTGATACGTGTTTCTTAACAAAt                                                                                                         >  1:412509/1‑253 (MQ=255)                                                                                                                                                                                                                      ttCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCa                                                                                                                                                                                                                        >  2:417176/1‑115 (MQ=255)                                                                                                                                                                                                                      ttCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCa                                                                                                                                                                                                                        <  1:417176/115‑1 (MQ=255)                                                                                                                                                                                                                                                   gcgGGCCAGGGCCGATTTCCCGCTGCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                  <  1:5297/204‑1 (MQ=255)                                                                                                                                                                                                                                                        ccAGGGCCGATTTCCCGTTTCCATGCGACCCGACAACCGCCCAACTATAACCGGCGTTTAACTTTAGCGGAGGAAATTGCGGCGTTTTTGTGTCGCTAAGAGGACAGGTGCCTTACAAAATTTGCAAGGATGACATTTTATATCCCTCTTTGTGCAGGGATTACTGACAGGGATACGTGTTTCATAACAAATGGTAAacac                                                                                                <  1:569165/201‑1 (MQ=255)                                                                                                                                                                                                                                                        ccAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAg                                                      <  1:624260/243‑1 (MQ=255)                                                                                                                                                                                                                                                               cGATTTCCCGATTCCATTCGAAACGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGACAGAGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATACTCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCa  <  1:49246/288‑1 (MQ=255)                                                                                                                                                                                                                                                                 ttttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAg                                                                                                                                            <  2:77764/147‑1 (MQ=255)                                                                                                                                                                                                                                                                 aTTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAg                                                                                                                                            >  1:77764/1‑148 (MQ=255)                                                                                                                                                                                                                                                                 aTTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGCCAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                  >  2:262338/1‑190 (MQ=255)                                                                                                                                                                                                                                                                 aTTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                  >  2:564575/1‑190 (MQ=255)                                                                                                                                                                                                                                                                 aTTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                  <  1:564575/190‑1 (MQ=255)                                                                                                                                                                                                                                                                 aTTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                  <  1:262338/190‑1 (MQ=255)                                                                                                                                                                                                                                                                 aTTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTTACATTCTGTCCTTGCTGTAGAGAAGTCGCTTCATTTACCgg    >  1:91766/1‑284 (MQ=255)                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                    AGGGCGGTAATACCGAACTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGACATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCA  >  NC_000913/793406‑793947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.