New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2577881 =	26 (0.680)	3 (0.080)	3/406	4.5	10.4%	coding (497/2280 nt)	maeB	malate dehydrogenase (oxaloacetate‑decarboxylating) (NADP(+))
	?	NC_000913	= 2580301	26 (0.690)					coding (666/2004 nt)	tktB	transketolase 2
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGTACACTGGCGGCGCAGTTTAACCAGCCAGACCATGAGA‑TCGTCGATCACTTCACCTATGTGTTTATGGGCGACGGCTGCCTGATGGAAGGTATTTCCCACGAAGTCTGTTCGCTGGCAGGCACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGCACCACTGGGGGAAGAAGAAGTGGCGCTGGCACGGCAAAAACTGGGCTGGCACCATCCGCCATTTGAG  >  NC_000913/2580022‑2580487                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                           gCGTGCACTGTCGGCGAAGTTTAACCGACCATAACAT‑AGATTCGTCGATCACTTGACCTTTGTTTTTATGGGCGACGGCTGCCTGATGGAAAGGATTTCCCACGAAGTCTGTTCGCGGGCAGGCACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGTTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTgaagg                                                                                                                                                                                     <  1:422303/287‑1 (MQ=255)                           caccagACCATGAGA‑TCGTCGATCACTTCACCTATGTGTTTATGGGCGACGGCTGCCGGATGGAAGGTGTTTCCCACGAAGTCTGTTCGCTGGCAGGCACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGa                                                                                                                                                          <  1:409272/286‑1 (MQ=255)                           agccagACCATGAGA‑TCGGCGATACCTTCACCTTTGTGTTTAGGGGCGAGGGCTGCCTGATGGAAGGTATTTCCCACGAAGTCTGTTCGCGGGCAGGCACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTAACGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGa                                                                                                                                                          <  1:73580/288‑1 (MQ=255)                                                            tatgattttATGGGCGACGGCTGCCTGATGGAAGGTATTTCCCACGAAGTCTGTTCGCTGGCAGGCACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACg                                                                                                                          <  1:165813/282‑1 (MQ=255)                                                              tgtgTTTATGGGCGACGGCTGCCTGATGGAAGGTATTTCCCACGAAGTCTGTTCGCTGGCAGGCACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAACCAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGaa                                                                                                                                                         >  1:93067/1‑255 (MQ=255)                                                                tgtTTATGGGCGACGGCTGCCTGATGGAAGGTATTTCCCACGAAGTCTGTTCGCTGGCAGGCACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGa                                                                                                                      >  1:398181/1‑288 (MQ=255)                                                                                aagatggtagaaaGATAATTCCAACTATGTCTTTTCGCTGGAAGGGACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTg                                                                                                             <  2:398181/270‑1 (MQ=255)                                                                                        tGGAAGGTATTTCCCACGAAGTCTGTTCGCTGGCAGGCACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTAt                                                                                                                                    <  1:71667/250‑1 (MQ=255)                                                                                                           aggcTGTTCGCTGGCAGGAACGGTGGGACTGGGCAAGCTGATTGGTTTTTACGATAACAACGGTATTTACATCGACGGTGAAACAGAAGGCTGGTTTAACGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGGGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTAAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCTCCAAAAAAAGCAGGTAAGGAAGAggcgca                                                                           <  1:569747/285‑1 (MQ=255)                                                                                                            gTCTGTTCGCTGGACGGCACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGGAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAggcgca                                                                           <  1:644008/287‑1 (MQ=255)                                                                                                                       ggcaggcaCGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGcaccacg                                                               >  1:400003/1‑287 (MQ=255)                                                                                                                                      aCTGGGCAAGCTGATTGGTTTTTACAATCAAAATGGTATTTCCAGCGAAGGTGAAACAGAAGGCTGGTTTACCGACGATACGGAAAAACGTTGTGAAGACTATCACTGGCATGTGATCCATGAAATCGACGGTCAAGATCCGCAGGCGGTGAAGGAAGCGATACTTGAAGCGCAAAGCGGGAAAGATAAGCCGTCGGTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGCACCACTGGGGGaagaagaag                                                 <  1:262140/287‑1 (MQ=255)                                                                                                                                          ggCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGCACCACTGGGGGAAGAAGAAgggg                                              >  1:602681/1‑286 (MQ=255)                                                                                                                                          ggCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAAAggcgcacggcgca                                                                    >  1:417486/1‑264 (MQ=255)                                                                                                                                            aaaGCTGATTGTTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGAAAAACGTTTGGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGc                                                                                             <  1:630774/236‑1 (MQ=255)                                                                                                                                                cTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTa                                                                                        <  2:116163/238‑1 (MQ=255)                                                                                                                                                cTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTa                                                                                        >  1:116163/1‑238 (MQ=255)                                                                                                                                                          tttACTATCACAACGGTATTTCCAACGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGCTCCGCAGGCGGTGAAGGAAGCTATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGCACCACTGGGGGAAGAAGAAGTGGCGCTGGCACGGCAAAAAc                            <  1:268822/288‑1 (MQ=255)                                                                                                                                                                                    aagggacagaCAGAAGGGTGTTTTACCGACAATACGGAAAAACGTTTTGAAGCCTACTACGGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGCACCACTGGGGGAAGAAAAAGTGGCGCGGGCACGGCAAAAACTGGGCTGGCACCATCCGCCATTTgag  <  1:458388/279‑1 (MQ=255)                                                                                                                                                                                             aaggagggggtttttACCGAAGATAGGGCAAAACGTTTTGAAGCCTATCACTGGCATGGGTTCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGCACCACTGGGGGAAGAAGAAGTGGCGCTGGCACGGCAAAAACTGGGCTGGCACCATCCGCCATTTga   <  2:400003/266‑1 (MQ=255)                                                                                                                                                                                                                                         ccaTCACTGGCATGTGACCCATGAAATCGAGGGTCACGAACCGCCGGCGATGAAGGAAGCGATCATTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTAATTATCTGCCGTACGGTGATTGGTTTTGGTTCg                                                                                                        <  1:520531/131‑1 (MQ=255)                                                                                                                                                                                                                                                  gCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTg                                                                                                                                                           >  2:100218/1‑73 (MQ=255)                                                                                                                                                                                                                                                  gCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTg                                                                                                                                                           <  1:100218/73‑1 (MQ=255)                                                                                                                                                                                                                                                       tgATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTCAGAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGCACCCCTGGGGGAAGAAGAAGTGGCGCTGGCCCGGCAAAACCTGGGCTGGCACCATCCGCCATTTg    >  1:139710/1‑219 (MQ=255)                                                                                                                                                                                                                                                          tCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGa                                                                                                                                                                        >  1:175205/1‑52 (MQ=255)                                                                                                                                                                                                                                                          tCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGa                                                                                                                                                                        <  2:175205/52‑1 (MQ=255)                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                           GCGTACACTGGCGGCGCAGTTTAACCAGCCAGACCATGAGA‑TCGTCGATCACTTCACCTATGTGTTTATGGGCGACGGCTGCCTGATGGAAGGTATTTCCCACGAAGTCTGTTCGCTGGCAGGCACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTCCATCGACGGTGAAACAGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATGAAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATTATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGCACCACTGGGGGAAGAAGAAGTGGCGCTGGCACGGCAAAAACTGGGCTGGCACCATCCGCCATTTGAG  >  NC_000913/2580022‑2580487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.