New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	14 (0.430)	15 (0.500)	11/388	1.5	57.8%	coding (305/630 nt)	ycfK	protein StfP
	?	NC_000913	= 1209602	9 (0.300)					intergenic (‑483/‑83)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

GTAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGA  >  NC_000913/1209352‑1209868                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                           gTAACCCATGAGCATGATCCACCGTTGCATCCACCTGAATACTTAAAATAGAGCGACCTGTATCACTCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca                                                                                                                                                                                                                                       >  1:47285‑M2/1‑251 (MQ=255)             cATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagacgtttgca                                                                                                                                                                                                                                       >  1:413421‑M2/1‑239 (MQ=255)                                      aaTACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATTCACTCACCACGTAAATAAGGCACTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTTGCGGAGTGGATGACGGCCACGGAACCGGG‑ACACCAACCGGTAATGCAGATCCTTCCCCAAAAACAACGTATACGAAAAAGAAAAAAAAAAAAGCAAATGGCATCAATTCCGCtttt                                                                                                                                                                                                          >  2:182402/1‑280 (MQ=255)                                           ttAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccccccgatttgctttctcccaaccgcttcttccgg                                                                                                                                                                                              <  1:306568‑M2/287‑79 (MQ=255)                                                                cAATCCCCCGCCCGTCATCCAAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGGCAGCCTGTTGGCGGAGTGGCTGAAGGCCCCGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtg                                                                                                                                                                        >  1:52792‑M2/1‑188 (MQ=255)                                                                   tCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc                                                                                                                                                                                                                 >  1:190960/1‑244 (MQ=255)                                                                                          cGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtggcatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccc                                                                                                                                              >  1:101112‑M2/1‑162 (MQ=255)                                                                                              tAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCACCAGGTAATGCAGAGccttctcccaaaccaaggtgttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcgg                                                                                                                                                                                              >  1:218561‑M2/1‑158 (MQ=255)                                                                                                 aCTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                                                                                                                                         <  1:272753/238‑1 (MQ=255)                                                                                                     accacGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattctttcggcttaacagcagcgcgcgacgtgcggtaagtaactggtcgtgccgccccttctccaggct                                                                                                                                   <  1:260688‑M2/288‑138 (MQ=255)                                                                                                     accacGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca                                                                                                                                                                                                                                       >  1:117486‑M2/1‑151 (MQ=255)                                                                                                     accacGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca                                                                                                                                                                                                                                       <  2:117486‑M2/188‑38 (MQ=255)                                                                                                                                 ggATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaa                                                                                                       >  1:549370‑M2/1‑123 (MQ=255)                                                                                                                                                                      aaaaaGCGGCACCATTGCATTTCAGCCAGGCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggccccggatgcctgcaccacgctgcaaagttcctcctgcaacatgtcaaagtagacatactcca                                                                  <  1:200342‑M2/288‑203 (MQ=255)                                                                                                                                                                                            cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAAGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAGGACCAGAACACAGATCTACAACGTAATGACCTTAACTGAGCAGGCGTGGAGTCACATTCTGAGGACAAGAAAAACGGCTAAAAGTCCGTAATGACgggggcggnan                                               >  2:173056/1‑277 (MQ=255)                                                                                                                                                                                                          cgggggggcggcaaggcccagaaaccGGGGACGCAAACAGGTAGTGCCGGGcctcctccccagccaaggttgtcgtgagccgtttgcacagtgcgatccgatttgatgtcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtggcaggcgtgccggtctgggggttacc                                >  2:260688‑M2/13‑51 (MQ=255)                                                                                                                                                                                                            ggAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAAAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGAATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCGGGATGCGAGCTGATTTTTGAAGACAAGAGAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTAt                             <  1:182402/287‑1 (MQ=255)                                                                                                                                                                                                                                aaCCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                                                                                                                                         <  1:383179/111‑1 (MQ=255)                                                                                                                                                                                                                                aaCCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                                                                                                                                         >  2:383179/1‑111 (MQ=255)                                                                                                                                                                                                                                            cAACAGGTAAGGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGc                         <  1:298481/260‑1 (MQ=255)                                                                                                                                                                                                                                             aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccacca                                                                                                               >  1:192348‑M2/1‑16 (MQ=255)                                                                                                                                                                                                                                                      tGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcctcatccagaccggtggcaggcgtgccggtctggggtgtaccacggagaaaacccgttgttcccgcgctgac  <  2:62303‑M2/273‑267 (MQ=255)                                                                                                                                                                                                                                                      tGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatagcgccaaacggagtcttgcggcttaacagcagcgcgcgaagttcggtaagtcactggtcgtgccaccccttctcccggcagccgccggatccctccaccacgctgcaac                                                                                                      <  2:192348‑M2/173‑167 (MQ=255)                                                                                                                                                                                                                                                      tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAACAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAGTGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAgg                                    >  1:540891/1‑239 (MQ=255)                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                           GTAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGG‑ACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGA  >  NC_000913/1209352‑1209868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.