New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4542690	59 (1.460)	11 (0.280)	11/420	2.4	18.7%	intergenic (+57/‑425)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	= 4542986	39 (1.010)					intergenic (+353/‑129)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
Rejected: Frequency below/above cutoff threshold.

GGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTA  >  NC_000913/4542418‑4542976                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                               ggAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTACGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGTGCATCGAAATATTCGCCATACTGTGCGTTTTACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag                                                                                                                                                                                                                                                                                 >  1:250152‑M1/1‑273 (MQ=255)                          atatGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAATAAAATAAAAAACAATTGGGGCCAgtttgaactgtcgcgn                                                                                                                                                                                                                                                                                >  2:121684‑M1/1‑248 (MQ=255)                                         cTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTATGACATCGAAATATTCGCAATACTGTGCGTTATACCGCAAGTAATGCTGCTCGTTTTGTCGGATTCTGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGTCAttttgactcatagaggaaagcatagcggacaaatttttcccgtttatttgttggc                                                                                                                                                                                                                                         >  1:242153‑M1/1‑233 (MQ=255)                                                                    gtgCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                                                                                                                                                                              >  1:296615/1‑288 (MQ=255)                                                                                 tttAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAatta                                                                                                                                                                                                 >  1:557088/1‑288 (MQ=255)                                                                                 tttAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAatta                                                                                                                                                                                                 >  1:101866/1‑288 (MQ=255)                                                                                 tttAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGGTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATAAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAAACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCCCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAatta                                                                                                                                                                                                 >  1:699689/1‑288 (MQ=255)                                                                                                     ggCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata                                                                                                                                                                                                                                                                                     <  1:4823/184‑1 (MQ=255)                                                                                                     ggCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata                                                                                                                                                                                                                                                                                     >  2:4823/1‑184 (MQ=255)                                                                                                     ggCATATAAATATTCGCCATACTGTTCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                                                                                                                                                                             <  1:72188/288‑1 (MQ=255)                                                                                                                    acanacgtggggtttAAACCCCCAGTAAGGTTGACCGTTTTGCCGGAATATGTGAAAAAAAAAATATCATAAACGAAAAATTAAAAAAGGAAGA‑GGTTTGATTT‑AACTTATTTATAATAAAGTTAAAAAAACAAATAAAAACAAGTCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTTTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCt                                                                                                                                                              <  2:296615/275‑1 (MQ=255)                                                                                                                                  tataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AATTTAGTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttttttagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgtggaagatgcgacgagcca                                                                                                                                                >  1:194834‑M1/1‑144 (MQ=255)                                                                                                                                    taCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACg                                                                                                                                              <  1:379190/288‑1 (MQ=255)                                                                                                                                       cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGGTCACAACATAAATAAGTTACGt                                                                                                                                                                                                                                                                    >  2:418503/1‑167 (MQ=255)                                                                                                                                         ccAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATCGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGCGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGAATCTAACTGTTTGATATGTAATTTNATTCTATTGTAaattaaatacnnaantnat                                                                                                                                                                   >  2:139073/1‑249 (MQ=255)                                                                                                                                            gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑ACCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTATAAATTAATTTCACATCACCTCCGCt                                                                                                                                                              <  1:440305/264‑1 (MQ=255)                                                                                                                                            gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCt                                                                                                                                                                   <  1:581013/259‑1 (MQ=255)                                                                                                                                              aaTGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCt                                                                                                                                                                   <  1:310264/257‑1 (MQ=255)                                                                                                                                                  ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAcc                                                                                                                                                                    <  1:397789/252‑1 (MQ=255)                                                                                                                                                    gctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgt                                                                                                                                                                                                                                             <  1:629261‑M1/177‑52 (MQ=255)                                                                                                                                                    gctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCAAAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgt                                                                                                                                                                                                                                             >  2:629261‑M1/1‑126 (MQ=255)                                                                                                                                                     ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATATTAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaggaatgaggaagatgcgtcgagccacagaaacgttagctttaca                                                                                                                             >  1:219154‑M1/1‑125 (MQ=255)                                                                                                                                                     ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                                                                                                                                                                              <  2:421493/127‑1 (MQ=255)                                                                                                                                                     ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                                                                                                                                                                              >  1:421493/1‑127 (MQ=255)                                                                                                                                                     ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat                                                                                                                                                                                                                                                                             <  2:355272/144‑1 (MQ=255)                                                                                                                                                     ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat                                                                                                                                                                                                                                                                             >  1:355272/1‑144 (MQ=255)                                                                                                                                                     ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAATTTATTTCTATTATAAATTAATTTCCAATCACCTCCGCCATATGTAAAGccggcccctcaatca                                                                                                                                     >  2:440305/1‑266 (MQ=255)                                                                                                                                                     ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGc                                                                                                                             >  1:504684/1‑288 (MQ=255)                                                                                                                                                       cGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa                                                                                                                                                                                                                              <  1:218152/189‑1 (MQ=255)                                                                                                                                                       cGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa                                                                                                                                                                                                                              >  2:218152/1‑189 (MQ=255)                                                                                                                                                       cGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGc                                                                                                                             >  1:397512/1‑286 (MQ=255)                                                                                                                                                       cGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCAt                                                                                                                           <  1:265918/288‑1 (MQ=255)                                                                                                                                                           ttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATAAAAGACAATTGGGGACAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCACGCATAAAAATCTTAAAAAACGACAAAAAGCATCTAACTGTTTGAAATGTAAATGATTTCTATTTTAAATTAATTTAACATCAACTACGcactaaanngtt                                                                                                                                                    >  2:397789/1‑248 (MQ=255)                                                                                                                                                                     aTGGAAAAGAAATAATCTCATAAAAGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCAttcttc                                                                                                             <  1:572133/288‑1 (MQ=255)                                                                                                                                                                           aagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAGAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCa                                                                                                       >  1:626725/1‑288 (MQ=255)                                                                                                                                                                            agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc                                                                                                                                                                                                                       <  2:258842/175‑1 (MQ=255)                                                                                                                                                                            agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc                                                                                                                                                                                                                       >  1:258842/1‑175 (MQ=255)                                                                                                                                                                                   atCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAat                                                                                                                                                                                                   >  1:197877/1‑188 (MQ=255)                                                                                                                                                                                   atCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAat                                                                                                                                                                                                   <  2:197877/188‑1 (MQ=255)                                                                                                                                                                                        aTAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcaca                                                                                                                                                                         <  1:35936/209‑1 (MQ=255)                                                                                                                                                                                        aTAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcaca                                                                                                                                                                         >  2:35936/1‑209 (MQ=255)                                                                                                                                                                                        aTAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCa                                                                                           >  1:642799/1‑287 (MQ=255)                                                                                                                                                                                        aTAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCAt                                                                                          >  1:148136/1‑288 (MQ=255)                                                                                                                                                                                        aTAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCAt                                                                                          <  1:139073/288‑1 (MQ=255)                                                                                                                                                                                        aTAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCCCCAAAAACCACCTCa                                                                                           >  1:490721/1‑287 (MQ=255)                                                                                                                                                                                          aaaaaaaaaaaaaaaaaaaGAAAATGTTTTAATTA‑AACTTATTGATAAAAAATTTAAAAAAAAAAATAAATACAAGACAATTGGTGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATTTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATg                                                                                         <  2:557088/283‑1 (MQ=255)                                                                                                                                                                                                aaaaTTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATAGCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTa                                                                                                                                                                                                                     >  1:463512/1‑157 (MQ=255)                                                                                                                                                                                                  aaTTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATaaa                                                                                <  1:304399/288‑1 (MQ=255)                                                                                                                                                                                                             ntngn‑ggttTGTTTTAAAGTTATTAATAATAAAGTTAAAAAAACAAAGAAATACAAGACAATTGTGGCCAttttgcctcatagaggaaagcatcgcggacaaacttttgcagtttatttctttgcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagacgaatgaggaagatgcgtcgagccacagaaacgttagctttacatatagcggaggtgatttgaaattaatttacaatagaaataatttacatatcaaa                                                                       <  2:219154‑M1/284‑218 (MQ=255)                                                                                                                                                                                                             gaaga‑gGTTTGATTT‑AACTTAATGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATg                                                                                         <  1:687412/268‑1 (MQ=255)                                                                                                                                                                                                              aaga‑gGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCt                                                                                                                                                              >  2:17444/1‑198 (MQ=255)                                                                                                                                                                                                              aaga‑gGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCt                                                                                                                                                              <  1:17444/198‑1 (MQ=255)                                                                                                                                                                                                                         aTTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACaa                                                          >  1:252565/1‑288 (MQ=255)                                                                                                                                                                                                                          ttt‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacagaaacgttagctttaca                                                                                                                             <  1:519323‑M1/220‑164 (MQ=255)                                                                                                                                                                                                                          ttt‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCa                                                                                       <  1:363574/258‑1 (MQ=255)                                                                                                                                                                                                                            t‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAGTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAAGTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAg                                                       <  1:348224/288‑1 (MQ=255)                                                                                                                                                                                                                               aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGAc                                                                                                                               >  1:221131/1‑214 (MQ=255)                                                                                                                                                                                                                               aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGAc                                                                                                                               <  2:221131/214‑1 (MQ=255)                                                                                                                                                                                                                                           taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacaga                                                                                                                                            <  2:185877‑M1/189‑149 (MQ=255)                                                                                                                                                                                                                                           taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacaga                                                                                                                                            >  1:185877‑M1/1‑41 (MQ=255)                                                                                                                                                                                                                                                            caaaagatgaaaCATTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATg                                                                                         <  1:260404/212‑1 (MQ=255)                                                                                                                                                                                                                                                                         aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATaaa                                                                                >  1:652641/1‑219 (MQ=255)                                                                                                                                                                                                                                                                         aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAAGATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGc           <  1:227675/288‑1 (MQ=255)                                                                                                                                                                                                                                                                           ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaaga                                                                                                                                                                      <  2:78672‑M1/131‑123 (MQ=255)                                                                                                                                                                                                                                                                           ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaaga                                                                                                                                                                      >  1:78672‑M1/1‑9 (MQ=255)                                                                                                                                                                                                                                                                           ttGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCt                                                                                                                                                                                                                      >  2:317013/1‑83 (MQ=255)                                                                                                                                                                                                                                                                           ttGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCt          >  1:536540/1‑287 (MQ=255)                                                                                                                                                                                                                                                                           tgggggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCt                                                                                                                                                                                                                      <  1:317013/81‑1 (MQ=255)                                                                                                                                                                                                                                                                                gCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagttgcgtcgagccacagaaacgttagctttacatatagcggagttgatgtgaaattaatttacaatagaaataatttacatatcaaacag                                                                    >  1:247288‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                                                gCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacagaaacgttagctttacatatagcggaggtgatgtgaaattaatttacaatagaaataatttacatatcaaa                                                                       >  1:56043‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                                                gCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacagaaacgttagctttacatatagcggaggtgatgtgaaattaatttacaatagaaataatttacatatcaaa                                                                       <  2:56043‑M1/221‑218 (MQ=255)                                                                                                                                                                                                                                                                                gCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCcg                 <  1:305961/275‑1 (MQ=255)                                                                                                                                                                                                                                                                                gCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAATAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCGCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATaa                                                             <  1:652179/231‑1 (MQ=255)                                                                                                                                                                                                                                                                                  cAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTAATGCAATATAAACATCTataaata                                                                    <  1:195810/222‑1 (MQ=255)                                                                                                                                                                                                                                                                                   attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacagaaacgttagctttacatatagcggaggtgatgtgaaattaatttacaatagaaataatttacatatcaaacagttagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgat  <  1:293578‑M1/287‑287 (MQ=255)                                                                                                                                                                                                                                                                                   aaaCTGTACATAACATAAATATGTTACGTACTTTTACGCAAACATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGGAAAGCTAACGTTTCTTTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAACGATAAATAAAGATAACAATAGAATATGAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTa  <  1:658583/287‑1 (MQ=255)                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                               GGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGA‑GGTTTGATTT‑AACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTA  >  NC_000913/4542418‑4542976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.